RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 PIK3R4Q99570 1358 aa10.39□□□□□ -0.75
CD44-237ENST00000534082 HAX1O00165 279 aa10.38□□□□□ -0.75
CD44-237ENST00000534082 BLMP54132 1417 aaPredicted RBP10.38□□□□□ -0.75
CD44-237ENST00000534082 GCC2Q8IWJ2 1684 aa10.38□□□□□ -0.75
CD44-237ENST00000534082 DDX17Q92841 729 aaKnown RBP10.37□□□□□ -0.75
CD44-237ENST00000534082 SLC52A1Q9NWF4 448 aa10.37□□□□□ -0.75
CD44-237ENST00000534082 MYO5BQ9ULV0 1848 aa10.37□□□□□ -0.75
CD44-237ENST00000534082 TRPM2O94759 1503 aa10.37□□□□□ -0.75
CD44-237ENST00000534082 PTCH1Q13635 1447 aa10.36□□□□□ -0.75
CD44-237ENST00000534082 TMEM131LA2VDJ0 1609 aa10.36□□□□□ -0.75
CD44-237ENST00000534082 CROCC2H7BZ55 1655 aa10.35□□□□□ -0.75
CD44-237ENST00000534082 MYOM3Q5VTT5 1437 aa10.35□□□□□ -0.75
CD44-237ENST00000534082 PTPRUQ92729 1446 aa10.35□□□□□ -0.75
CD44-237ENST00000534082 HDGFP51858 240 aaKnown RBP10.35□□□□□ -0.75
CD44-237ENST00000534082 CHADLQ6NUI6 762 aa10.35□□□□□ -0.75
CD44-237ENST00000534082 DEFB132Q7Z7B7 95 aa10.35□□□□□ -0.75
CD44-237ENST00000534082 FNBP4Q8N3X1 1017 aaPredicted RBP10.35□□□□□ -0.75
CD44-237ENST00000534082 RRP7BPQ9NSQ0 103 aa10.34□□□□□ -0.75
CD44-237ENST00000534082 XRN1Q8IZH2 1706 aaKnown RBP10.33□□□□□ -0.76
CD44-237ENST00000534082 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.33□□□□□ -0.76
CD44-237ENST00000534082 AMOTL2Q9Y2J4 779 aa10.33□□□□□ -0.76
CD44-237ENST00000534082 RPRD2Q5VT52 1461 aaKnown RBP10.33□□□□□ -0.76
CD44-237ENST00000534082 BCL9LQ86UU0 1499 aa10.33□□□□□ -0.76
CD44-237ENST00000534082 UNC13BO14795 1591 aa10.33□□□□□ -0.76
CD44-237ENST00000534082 LAMC1P11047 1609 aa10.32□□□□□ -0.76
CD44-237ENST00000534082 ADGRL3Q9HAR2 1447 aa10.32□□□□□ -0.76
CD44-237ENST00000534082 PSDA5PKW4 1024 aaPredicted RBP10.31□□□□□ -0.76
CD44-237ENST00000534082 HRCP23327 699 aa10.31□□□□□ -0.76
CD44-237ENST00000534082 COL22A1Q8NFW1 1626 aaPredicted RBP10.31□□□□□ -0.76
CD44-237ENST00000534082 ABCC5O15440 1437 aa10.31□□□□□ -0.76
CD44-237ENST00000534082 YY1P25490 414 aa10.3□□□□□ -0.76
CD44-237ENST00000534082 SF3B2Q13435 895 aaKnown RBP10.3□□□□□ -0.76
CD44-237ENST00000534082 NALCNQ8IZF0 1738 aa10.3□□□□□ -0.76
CD44-237ENST00000534082 MYOM2P54296 1465 aa10.3□□□□□ -0.76
CD44-237ENST00000534082 GJD4Q96KN9 370 aaPredicted RBP10.29□□□□□ -0.76
CD44-237ENST00000534082 GLI3P10071 1580 aa10.29□□□□□ -0.76
CD44-237ENST00000534082 SPHKAPQ2M3C7 1700 aa10.29□□□□□ -0.76
CD44-237ENST00000534082 SOS2Q07890 1332 aaPredicted RBP10.29□□□□□ -0.76
CD44-237ENST00000534082 C1orf167Q5SNV9 1468 aa10.29□□□□□ -0.76
CD44-237ENST00000534082 CHGAP10645 457 aaKnown RBP10.28□□□□□ -0.76
CD44-237ENST00000534082 RALGAPBQ86X10 1494 aa10.28□□□□□ -0.76
CD44-237ENST00000534082 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.27□□□□□ -0.76
CD44-237ENST00000534082 DAPK1P53355 1430 aa10.27□□□□□ -0.77
CD44-237ENST00000534082 NRXN3Q9Y4C0 1643 aa10.27□□□□□ -0.77
CD44-237ENST00000534082 SP7Q8TDD2 431 aaPredicted RBP10.27□□□□□ -0.77
CD44-237ENST00000534082 MARF1Q9Y4F3 1742 aaKnown RBP10.26□□□□□ -0.77
CD44-237ENST00000534082 BRWD3Q6RI45 1802 aa10.26□□□□□ -0.77
CD44-237ENST00000534082 ANKRD30AQ9BXX3 1397 aa10.26□□□□□ -0.77
CD44-237ENST00000534082 PTPN23Q9H3S7 1636 aa10.25□□□□□ -0.77
CD44-237ENST00000534082 IFFO2Q5TF58 517 aa10.23□□□□□ -0.77
CD44-237ENST00000534082 ORAI2Q96SN7 254 aa10.23□□□□□ -0.77
CD44-237ENST00000534082 METP08581 1390 aa10.23□□□□□ -0.77
CD44-237ENST00000534082 SLIT2O94813 1529 aa10.23□□□□□ -0.77
CD44-237ENST00000534082 BAG6P46379 1132 aa10.22□□□□□ -0.77
CD44-237ENST00000534082 R3HDM1Q15032 1099 aaKnown RBP10.22□□□□□ -0.77
CD44-237ENST00000534082 EVX2Q03828 476 aa10.21□□□□□ -0.77
CD44-237ENST00000534082 UNC5CLQ8IV45 518 aa10.21□□□□□ -0.77
CD44-237ENST00000534082 SEPT12Q8IYM1 358 aa10.21□□□□□ -0.77
CD44-237ENST00000534082 CHIC2Q9UKJ5 165 aa10.21□□□□□ -0.77
CD44-237ENST00000534082 PXDNQ92626 1479 aa10.21□□□□□ -0.78
CD44-237ENST00000534082 IQGAP3Q86VI3 1631 aa10.2□□□□□ -0.78
CD44-237ENST00000534082 E9PCH4 1651 aa10.19□□□□□ -0.78
CD44-237ENST00000534082 KANK4Q5T7N3 995 aaPredicted RBP10.19□□□□□ -0.78
CD44-237ENST00000534082 KRT27Q7Z3Y8 459 aa10.19□□□□□ -0.78
CD44-237ENST00000534082 ADGRL2O95490 1459 aa10.18□□□□□ -0.78
CD44-237ENST00000534082 ANKRD50Q9ULJ7 1429 aa10.18□□□□□ -0.78
CD44-237ENST00000534082 NPHP3Q7Z494 1330 aa10.18□□□□□ -0.78
CD44-237ENST00000534082 USP32Q8NFA0 1604 aa10.18□□□□□ -0.78
CD44-237ENST00000534082 RGPD1P0DJD0 1748 aa10.17□□□□□ -0.78
CD44-237ENST00000534082 EN1Q05925 392 aaPredicted RBP10.17□□□□□ -0.78
CD44-237ENST00000534082 VPS8Q8N3P4 1428 aa10.16□□□□□ -0.78
CD44-237ENST00000534082 UTRNP46939 3433 aa10.16□□□□□ -0.78
CD44-237ENST00000534082 XPCQ01831 940 aaPredicted RBP10.16□□□□□ -0.78
CD44-237ENST00000534082 VPS72Q15906 364 aa10.16□□□□□ -0.78
CD44-237ENST00000534082 FARP1Q9Y4F1 1045 aaPredicted RBP10.16□□□□□ -0.78
CD44-237ENST00000534082 DISP2A7MBM2 1401 aa10.16□□□□□ -0.78
CD44-237ENST00000534082 ROBO2Q9HCK4 1378 aa10.15□□□□□ -0.78
CD44-237ENST00000534082 SENP3-EIF4A1A0A087X0R7 540 aa10.15□□□□□ -0.78
CD44-237ENST00000534082 C19orf67A6NJJ6 358 aa10.15□□□□□ -0.78
CD44-237ENST00000534082 CCDC9Q9Y3X0 531 aaKnown RBP10.15□□□□□ -0.78
CD44-237ENST00000534082 PLCH1Q4KWH8 1693 aa10.15□□□□□ -0.79
CD44-237ENST00000534082 CDC42BPGQ6DT37 1551 aa10.14□□□□□ -0.79
CD44-237ENST00000534082 TNS1Q9HBL0 1735 aaKnown RBP10.14□□□□□ -0.79
CD44-237ENST00000534082 A0A0G2JS52 829 aa10.14□□□□□ -0.79
CD44-237ENST00000534082 ONECUT3O60422 494 aaPredicted RBP10.14□□□□□ -0.79
CD44-237ENST00000534082 MYT1Q01538 1121 aa10.14□□□□□ -0.79
CD44-237ENST00000534082 ESCO1Q5FWF5 840 aa10.13□□□□□ -0.79
CD44-237ENST00000534082 CREBZFQ9NS37 354 aa10.13□□□□□ -0.79
CD44-237ENST00000534082 PRAG1Q86YV5 1406 aa10.13□□□□□ -0.79
CD44-237ENST00000534082 ADGRB2O60241 1585 aa10.13□□□□□ -0.79
CD44-237ENST00000534082 NWD2Q9ULI1 1742 aa10.13□□□□□ -0.79
CD44-237ENST00000534082 FOXO3O43524 673 aa10.12□□□□□ -0.79
CD44-237ENST00000534082 ZNF326Q5BKZ1 582 aaKnown RBP10.12□□□□□ -0.79
CD44-237ENST00000534082 LRPPRCP42704 1394 aaKnown RBP10.12□□□□□ -0.79
CD44-237ENST00000534082 NEXMIFQ5QGS0 1516 aa10.12□□□□□ -0.79
CD44-237ENST00000534082 HFM1A2PYH4 1435 aa10.11□□□□□ -0.79
CD44-237ENST00000534082 FKBP8Q14318 412 aa10.11□□□□□ -0.79
CD44-237ENST00000534082 NINLQ9Y2I6 1382 aa10.11□□□□□ -0.79
CD44-237ENST00000534082 SPATA31A3Q5VYP0 1347 aa10.1□□□□□ -0.79
CD44-237ENST00000534082 EZH2Q15910 746 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms