RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 PIP4K2BP78356 416 aa7.93□□□□□ -1.14
CD44-218ENST00000525469 VPS9D1Q9Y2B5 631 aa7.93□□□□□ -1.14
CD44-218ENST00000525469 PLEKHD1A6NEE1 506 aa7.92□□□□□ -1.14
CD44-218ENST00000525469 HRCP23327 699 aa7.92□□□□□ -1.14
CD44-218ENST00000525469 HSPA1LP34931 641 aa7.92□□□□□ -1.14
CD44-218ENST00000525469 C6orf132Q5T0Z8 1188 aa7.92□□□□□ -1.14
CD44-218ENST00000525469 RBM33Q96EV2 1170 aaKnown RBP7.92□□□□□ -1.14
CD44-218ENST00000525469 ZBED2Q9BTP6 218 aa7.92□□□□□ -1.14
CD44-218ENST00000525469 ATP10AO60312 1499 aa7.92□□□□□ -1.14
CD44-218ENST00000525469 HECW1Q76N89 1606 aa7.92□□□□□ -1.14
CD44-218ENST00000525469 TOM1O60784 492 aa7.91□□□□□ -1.14
CD44-218ENST00000525469 VSIG10Q8N0Z9 540 aa7.91□□□□□ -1.14
CD44-218ENST00000525469 C9orf84Q5VXU9 1444 aa7.91□□□□□ -1.14
CD44-218ENST00000525469 SUPT6HQ7KZ85 1726 aaKnown RBP7.91□□□□□ -1.14
CD44-218ENST00000525469 C3P01024 1663 aa7.9□□□□□ -1.14
CD44-218ENST00000525469 RAPGEF6Q8TEU7 1601 aa7.9□□□□□ -1.14
CD44-218ENST00000525469 ZNF335Q9H4Z2 1342 aaPredicted RBP7.9□□□□□ -1.14
CD44-218ENST00000525469 GOLGA8CPA6NN73 597 aa7.9□□□□□ -1.14
CD44-218ENST00000525469 HRO43593 1189 aa7.9□□□□□ -1.14
CD44-218ENST00000525469 NCOA1Q15788 1441 aa7.89□□□□□ -1.15
CD44-218ENST00000525469 ONECUT3O60422 494 aaPredicted RBP7.89□□□□□ -1.15
CD44-218ENST00000525469 MRPL50Q8N5N7 158 aaKnown RBP7.89□□□□□ -1.15
CD44-218ENST00000525469 RABGEF1Q9UJ41 708 aa7.89□□□□□ -1.15
CD44-218ENST00000525469 TRAPPC8Q9Y2L5 1435 aa7.88□□□□□ -1.15
CD44-218ENST00000525469 CAMSAP1Q5T5Y3 1602 aa7.88□□□□□ -1.15
CD44-218ENST00000525469 SCAPERQ9BY12 1400 aa7.87□□□□□ -1.15
CD44-218ENST00000525469 SMYD5Q6GMV2 418 aa7.87□□□□□ -1.15
CD44-218ENST00000525469 COL9A1P20849 921 aa7.86□□□□□ -1.15
CD44-218ENST00000525469 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.85□□□□□ -1.15
CD44-218ENST00000525469 TRIM6-TRIM34B2RNG4 842 aa7.85□□□□□ -1.15
CD44-218ENST00000525469 OSBPP22059 807 aa7.85□□□□□ -1.15
CD44-218ENST00000525469 LAPTM4BQ86VI4 370 aa7.85□□□□□ -1.15
CD44-218ENST00000525469 PACS2Q86VP3 889 aa7.85□□□□□ -1.15
CD44-218ENST00000525469 HCSTQ9UBK5 93 aa7.85□□□□□ -1.15
CD44-218ENST00000525469 TSR1Q2NL82 804 aaKnown RBP7.84□□□□□ -1.15
CD44-218ENST00000525469 RBM27Q9P2N5 1060 aaKnown RBP7.84□□□□□ -1.15
CD44-218ENST00000525469 BHMG1C9JSJ3 638 aaPredicted RBP7.83□□□□□ -1.16
CD44-218ENST00000525469 TULP1O00294 542 aaPredicted RBP7.83□□□□□ -1.16
CD44-218ENST00000525469 PROX2Q3B8N5 592 aa7.83□□□□□ -1.16
CD44-218ENST00000525469 EFCAB2Q5VUJ9 269 aa7.83□□□□□ -1.16
CD44-218ENST00000525469 KCTD12Q96CX2 325 aaKnown RBP7.83□□□□□ -1.16
CD44-218ENST00000525469 NBPF26B4DH59 902 aa7.82□□□□□ -1.16
CD44-218ENST00000525469 ANKK1Q8NFD2 765 aa7.82□□□□□ -1.16
CD44-218ENST00000525469 WNT2BQ93097 391 aa7.82□□□□□ -1.16
CD44-218ENST00000525469 CNTLNQ9NXG0 1405 aa7.82□□□□□ -1.16
CD44-218ENST00000525469 KIAA1468Q9P260 1216 aa7.82□□□□□ -1.16
CD44-218ENST00000525469 NUP153P49790 1475 aaKnown RBP7.81□□□□□ -1.16
CD44-218ENST00000525469 MYO5CQ9NQX4 1742 aa7.81□□□□□ -1.16
CD44-218ENST00000525469 PTPRKQ15262 1439 aa7.81□□□□□ -1.16
CD44-218ENST00000525469 PRSS12P56730 875 aa7.81□□□□□ -1.16
CD44-218ENST00000525469 CDCA7LQ96GN5 454 aa7.81□□□□□ -1.16
CD44-218ENST00000525469 ZNF518AQ6AHZ1 1483 aa7.81□□□□□ -1.16
CD44-218ENST00000525469 PLCH2O75038 1416 aa7.8□□□□□ -1.16
CD44-218ENST00000525469 CPS1P31327 1500 aa7.8□□□□□ -1.16
CD44-218ENST00000525469 MLLT3P42568 568 aaPredicted RBP7.8□□□□□ -1.16
CD44-218ENST00000525469 KDM2AQ9Y2K7 1162 aa7.8□□□□□ -1.16
CD44-218ENST00000525469 NPATQ14207 1427 aa7.79□□□□□ -1.16
CD44-218ENST00000525469 AGLP35573 1532 aa7.79□□□□□ -1.16
CD44-218ENST00000525469 SEMA3EO15041 775 aa7.79□□□□□ -1.16
CD44-218ENST00000525469 RANGAP1P46060 587 aaPredicted RBP7.79□□□□□ -1.16
CD44-218ENST00000525469 FAM98CQ17RN3 349 aaKnown RBP7.79□□□□□ -1.16
CD44-218ENST00000525469 PLA2R1Q13018 1463 aa7.79□□□□□ -1.16
CD44-218ENST00000525469 SAMD9Q5K651 1589 aa7.79□□□□□ -1.16
CD44-218ENST00000525469 MROH2AA6NES4 1674 aa7.79□□□□□ -1.16
CD44-218ENST00000525469 AFAP1Q8N556 730 aa7.78□□□□□ -1.16
CD44-218ENST00000525469 CDHR5Q9HBB8 845 aa7.78□□□□□ -1.16
CD44-218ENST00000525469 REREQ9P2R6 1566 aa7.78□□□□□ -1.16
CD44-218ENST00000525469 DIP2CQ9Y2E4 1556 aa7.78□□□□□ -1.16
CD44-218ENST00000525469 ZNF142P52746 1687 aaPredicted RBP7.78□□□□□ -1.16
CD44-218ENST00000525469 NUTM2FA1L443 756 aa7.77□□□□□ -1.17
CD44-218ENST00000525469 TESPA1A2RU30 521 aaPredicted RBP7.77□□□□□ -1.17
CD44-218ENST00000525469 PRIM1P49642 420 aaKnown RBP7.77□□□□□ -1.17
CD44-218ENST00000525469 THSD4Q6ZMP0 1018 aa7.77□□□□□ -1.17
CD44-218ENST00000525469 POLR1AO95602 1720 aaPredicted RBP7.77□□□□□ -1.17
CD44-218ENST00000525469 KDM5CP41229 1560 aa7.76□□□□□ -1.17
CD44-218ENST00000525469 ZMYM3Q14202 1370 aa7.76□□□□□ -1.17
CD44-218ENST00000525469 SLC4A3P48751 1232 aa7.76□□□□□ -1.17
CD44-218ENST00000525469 HDGFP51858 240 aaKnown RBP7.76□□□□□ -1.17
CD44-218ENST00000525469 ZFRQ96KR1 1074 aaKnown RBP7.76□□□□□ -1.17
CD44-218ENST00000525469 RGS17Q9UGC6 210 aaPredicted RBP7.76□□□□□ -1.17
CD44-218ENST00000525469 SEPT9Q9UHD8 586 aaPredicted RBP7.76□□□□□ -1.17
CD44-218ENST00000525469 TSKSQ9UJT2 592 aa7.76□□□□□ -1.17
CD44-218ENST00000525469 ABCA6Q8N139 1617 aa7.76□□□□□ -1.17
CD44-218ENST00000525469 MYO3AQ8NEV4 1616 aa7.76□□□□□ -1.17
CD44-218ENST00000525469 ARHGAP5Q13017 1502 aa7.76□□□□□ -1.17
CD44-218ENST00000525469 CEP170BQ9Y4F5 1589 aaPredicted RBP7.76□□□□□ -1.17
CD44-218ENST00000525469 TCOF1Q13428 1488 aaKnown RBP7.75□□□□□ -1.17
CD44-218ENST00000525469 SHANK2Q9UPX8 1470 aa7.75□□□□□ -1.17
CD44-218ENST00000525469 FCHSD2O94868 740 aa7.75□□□□□ -1.17
CD44-218ENST00000525469 NYAP1Q6ZVC0 841 aa7.75□□□□□ -1.17
CD44-218ENST00000525469 LRCH3Q96II8 777 aa7.75□□□□□ -1.17
CD44-218ENST00000525469 PRXQ9BXM0 1461 aa7.75□□□□□ -1.17
CD44-218ENST00000525469 CLTCQ00610 1675 aaKnown RBP7.74□□□□□ -1.17
CD44-218ENST00000525469 PTPN5P54829 565 aa7.74□□□□□ -1.17
CD44-218ENST00000525469 NECTIN2Q92692 538 aa7.74□□□□□ -1.17
CD44-218ENST00000525469 PNMA3Q9UL41 463 aa7.74□□□□□ -1.17
CD44-218ENST00000525469 ATP1B4Q9UN42 357 aaPredicted RBP7.74□□□□□ -1.17
CD44-218ENST00000525469 CDK11AQ9UQ88 783 aaPredicted RBP7.74□□□□□ -1.17
CD44-218ENST00000525469 SETD1AO15047 1707 aaKnown RBP7.73□□□□□ -1.17
CD44-218ENST00000525469 SOWAHBA6NEL2 793 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms