RNA–Protein interactions for RNA: ENST00000521646.1

CSMD1-210, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 5

Gene CSMD1, Length 1,003 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-210ENST00000521646 RASEFQ8IZ41 740 aa17.21■□□□□ 0.35
CSMD1-210ENST00000521646 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.21■□□□□ 0.35
CSMD1-210ENST00000521646 MSH6P52701 1360 aa17.2■□□□□ 0.34
CSMD1-210ENST00000521646 ROCK1Q13464 1354 aa17.18■□□□□ 0.34
CSMD1-210ENST00000521646 BCANQ96GW7 911 aa17.18■□□□□ 0.34
CSMD1-210ENST00000521646 TBX22Q9Y458 520 aa17.18■□□□□ 0.34
CSMD1-210ENST00000521646 PPARGC1BQ86YN6 1023 aaKnown RBP17.17■□□□□ 0.34
CSMD1-210ENST00000521646 CHGAP10645 457 aaKnown RBP17.16■□□□□ 0.34
CSMD1-210ENST00000521646 NUBP1P53384 320 aa17.16■□□□□ 0.34
CSMD1-210ENST00000521646 PPP1R15AO75807 674 aaPredicted RBP17.15■□□□□ 0.34
CSMD1-210ENST00000521646 XRN1Q8IZH2 1706 aaKnown RBP17.15■□□□□ 0.34
CSMD1-210ENST00000521646 DIP2AQ14689 1571 aa17.15■□□□□ 0.34
CSMD1-210ENST00000521646 AHDC1Q5TGY3 1603 aaPredicted RBP17.14■□□□□ 0.33
CSMD1-210ENST00000521646 JCADQ9P266 1359 aa17.14■□□□□ 0.33
CSMD1-210ENST00000521646 NUP155O75694 1391 aa17.13■□□□□ 0.33
CSMD1-210ENST00000521646 CCDC61Q9Y6R9 512 aa17.12■□□□□ 0.33
CSMD1-210ENST00000521646 NCOA3Q9Y6Q9 1424 aa17.12■□□□□ 0.33
CSMD1-210ENST00000521646 SPHKAPQ2M3C7 1700 aa17.11■□□□□ 0.33
CSMD1-210ENST00000521646 ITGAEP38570 1179 aa17.11■□□□□ 0.33
CSMD1-210ENST00000521646 METP08581 1390 aa17.11■□□□□ 0.33
CSMD1-210ENST00000521646 TRPM2O94759 1503 aa17.11■□□□□ 0.33
CSMD1-210ENST00000521646 SETBP1Q9Y6X0 1596 aa17.11■□□□□ 0.33
CSMD1-210ENST00000521646 GALR2O43603 387 aaPredicted RBP17.1■□□□□ 0.33
CSMD1-210ENST00000521646 DCBLD2Q96PD2 775 aa17.1■□□□□ 0.33
CSMD1-210ENST00000521646 AMOTL2Q9Y2J4 779 aa17.1■□□□□ 0.33
CSMD1-210ENST00000521646 CLTCL1P53675 1640 aa17.1■□□□□ 0.33
CSMD1-210ENST00000521646 SHPRHQ149N8 1683 aa17.1■□□□□ 0.33
CSMD1-210ENST00000521646 BRINP3Q76B58 766 aa17.09■□□□□ 0.33
CSMD1-210ENST00000521646 PIK3R4Q99570 1358 aa17.09■□□□□ 0.33
CSMD1-210ENST00000521646 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.08■□□□□ 0.32
CSMD1-210ENST00000521646 FAM212AQ96EL1 285 aa17.08■□□□□ 0.32
CSMD1-210ENST00000521646 NEXMIFQ5QGS0 1516 aa17.07■□□□□ 0.32
CSMD1-210ENST00000521646 MST1RQ04912 1400 aa17.07■□□□□ 0.32
CSMD1-210ENST00000521646 DCAF8Q5TAQ9 597 aa17.07■□□□□ 0.32
CSMD1-210ENST00000521646 C19orf44Q9H6X5 657 aa17.07■□□□□ 0.32
CSMD1-210ENST00000521646 ASXL1Q8IXJ9 1541 aa17.06■□□□□ 0.32
CSMD1-210ENST00000521646 DDX17Q92841 729 aaKnown RBP17.06■□□□□ 0.32
CSMD1-210ENST00000521646 NALCNQ8IZF0 1738 aa17.05■□□□□ 0.32
CSMD1-210ENST00000521646 NHSL1Q5SYE7 1610 aa17.04■□□□□ 0.32
CSMD1-210ENST00000521646 C14orf37Q86TY3 774 aa17.04■□□□□ 0.32
CSMD1-210ENST00000521646 HDGFP51858 240 aaKnown RBP17.03■□□□□ 0.32
CSMD1-210ENST00000521646 CADPS2Q86UW7 1296 aa17.03■□□□□ 0.32
CSMD1-210ENST00000521646 IFNLR1Q8IU57 520 aaPredicted RBP17.03■□□□□ 0.32
CSMD1-210ENST00000521646 SPATA31A6Q5VVP1 1343 aa17.01■□□□□ 0.31
CSMD1-210ENST00000521646 ATF3P18847 181 aa17.01■□□□□ 0.31
CSMD1-210ENST00000521646 KIF12Q96FN5 646 aa17.01■□□□□ 0.31
CSMD1-210ENST00000521646 DCCP43146 1447 aa17.01■□□□□ 0.31
CSMD1-210ENST00000521646 NAIPQ13075 1403 aa17■□□□□ 0.31
CSMD1-210ENST00000521646 MS4A3Q96HJ5 214 aa17■□□□□ 0.31
CSMD1-210ENST00000521646 SETD5Q9C0A6 1442 aa16.99■□□□□ 0.31
CSMD1-210ENST00000521646 ADGRL3Q9HAR2 1447 aa16.98■□□□□ 0.31
CSMD1-210ENST00000521646 POTEIP0CG38 1075 aa16.98■□□□□ 0.31
CSMD1-210ENST00000521646 TRIM52Q96A61 297 aa16.98■□□□□ 0.31
CSMD1-210ENST00000521646 RRBP1Q9P2E9 1410 aaKnown RBP16.97■□□□□ 0.31
CSMD1-210ENST00000521646 SRCAPQ6ZRS2 3230 aa16.97■□□□□ 0.31
CSMD1-210ENST00000521646 NUTM2BA6NNL0 878 aaPredicted RBP16.97■□□□□ 0.31
CSMD1-210ENST00000521646 NUTM2EB1AL46 878 aaPredicted RBP16.97■□□□□ 0.31
CSMD1-210ENST00000521646 NUTM2AQ8IVF1 878 aaPredicted RBP16.97■□□□□ 0.31
CSMD1-210ENST00000521646 UPF1Q92900 1129 aaKnown RBP eCLIP16.97■□□□□ 0.31
CSMD1-210ENST00000521646 MAP3K13O43283 966 aa16.96■□□□□ 0.31
CSMD1-210ENST00000521646 PNPLA6Q8IY17 1366 aa16.95■□□□□ 0.3
CSMD1-210ENST00000521646 ROBO2Q9HCK4 1378 aa16.95■□□□□ 0.3
CSMD1-210ENST00000521646 ZNF326Q5BKZ1 582 aaKnown RBP16.95■□□□□ 0.3
CSMD1-210ENST00000521646 SPOCK2Q92563 424 aa16.95■□□□□ 0.3
CSMD1-210ENST00000521646 MEX3CQ5U5Q3 659 aaKnown RBP16.94■□□□□ 0.3
CSMD1-210ENST00000521646 C1orf167Q5SNV9 1468 aa16.93■□□□□ 0.3
CSMD1-210ENST00000521646 LAMC1P11047 1609 aa16.93■□□□□ 0.3
CSMD1-210ENST00000521646 KIF1BO60333 1816 aa16.93■□□□□ 0.3
CSMD1-210ENST00000521646 AFF2P51816 1311 aa16.93■□□□□ 0.3
CSMD1-210ENST00000521646 RGS12O14924 1447 aa16.91■□□□□ 0.3
CSMD1-210ENST00000521646 ZNF772Q68DY9 489 aaPredicted RBP16.91■□□□□ 0.3
CSMD1-210ENST00000521646 PPLO60437 1756 aa16.9■□□□□ 0.3
CSMD1-210ENST00000521646 GSE1Q14687 1217 aa16.9■□□□□ 0.3
CSMD1-210ENST00000521646 ORAI2Q96SN7 254 aa16.9■□□□□ 0.3
CSMD1-210ENST00000521646 PTCH1Q13635 1447 aa16.89■□□□□ 0.29
CSMD1-210ENST00000521646 EP400Q96L91 3159 aa16.89■□□□□ 0.29
CSMD1-210ENST00000521646 PRAG1Q86YV5 1406 aa16.88■□□□□ 0.29
CSMD1-210ENST00000521646 CDK12Q9NYV4 1490 aaPredicted RBP16.88■□□□□ 0.29
CSMD1-210ENST00000521646 RXRBP28702 533 aa16.87■□□□□ 0.29
CSMD1-210ENST00000521646 PCDHB13Q9Y5F0 798 aa16.87■□□□□ 0.29
CSMD1-210ENST00000521646 HFM1A2PYH4 1435 aa16.87■□□□□ 0.29
CSMD1-210ENST00000521646 PYGBP11216 843 aa16.86■□□□□ 0.29
CSMD1-210ENST00000521646 C8orf37Q96NL8 207 aa16.86■□□□□ 0.29
CSMD1-210ENST00000521646 LRRC59Q96AG4 307 aaKnown RBP16.85■□□□□ 0.29
CSMD1-210ENST00000521646 SOS2Q07890 1332 aaPredicted RBP16.85■□□□□ 0.29
CSMD1-210ENST00000521646 CIZ1Q9ULV3 898 aaPredicted RBP16.84■□□□□ 0.29
CSMD1-210ENST00000521646 ADGRF5Q8IZF2 1346 aa16.83■□□□□ 0.28
CSMD1-210ENST00000521646 ADAMTS2O95450 1211 aa16.82■□□□□ 0.28
CSMD1-210ENST00000521646 SGIP1Q9BQI5 828 aa16.82■□□□□ 0.28
CSMD1-210ENST00000521646 COL22A1Q8NFW1 1626 aaPredicted RBP16.81■□□□□ 0.28
CSMD1-210ENST00000521646 PXDNQ92626 1479 aa16.81■□□□□ 0.28
CSMD1-210ENST00000521646 QTRT2Q9H974 415 aaKnown RBP16.81■□□□□ 0.28
CSMD1-210ENST00000521646 IFT172Q9UG01 1749 aa16.81■□□□□ 0.28
CSMD1-210ENST00000521646 SPATA31E1Q6ZUB1 1445 aa16.8■□□□□ 0.28
CSMD1-210ENST00000521646 PLEKHH1Q9ULM0 1364 aa16.8■□□□□ 0.28
CSMD1-210ENST00000521646 MYOM2P54296 1465 aa16.8■□□□□ 0.28
CSMD1-210ENST00000521646 CDC42BPGQ6DT37 1551 aa16.79■□□□□ 0.28
CSMD1-210ENST00000521646 VGFO15240 615 aaPredicted RBP16.78■□□□□ 0.28
CSMD1-210ENST00000521646 TRPC6Q9Y210 931 aa16.78■□□□□ 0.28
CSMD1-210ENST00000521646 RBM6P78332 1123 aaKnown RBP16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms