RNA–Protein interactions for RNA: ENST00000515452.1

NR1I3-233, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 2 BASIC

Gene NR1I3, Length 1,093 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-233	ENST00000515452	ANKRD30B	Q9BXX2	1392 aa		11.52	□□□□□ -0.57
NR1I3-233	ENST00000515452	ATRN	O75882	1429 aa		11.52	□□□□□ -0.57
NR1I3-233	ENST00000515452	RIMS2	Q9UQ26	1411 aa		11.52	□□□□□ -0.57
NR1I3-233	ENST00000515452	ASXL1	Q8IXJ9	1541 aa		11.51	□□□□□ -0.57
NR1I3-233	ENST00000515452	NRXN3	Q9Y4C0	1643 aa		11.51	□□□□□ -0.57
NR1I3-233	ENST00000515452	CCDC144A	A2RUR9	1427 aa		11.51	□□□□□ -0.57
NR1I3-233	ENST00000515452	PTCH1	Q13635	1447 aa		11.5	□□□□□ -0.57
NR1I3-233	ENST00000515452	SPATA31E1	Q6ZUB1	1445 aa		11.5	□□□□□ -0.57
NR1I3-233	ENST00000515452	LRP5	O75197	1615 aa		11.49	□□□□□ -0.57
NR1I3-233	ENST00000515452	MST1R	Q04912	1400 aa		11.49	□□□□□ -0.57
NR1I3-233	ENST00000515452	IFFO2	Q5TF58	517 aa		11.48	□□□□□ -0.57
NR1I3-233	ENST00000515452	ADAMTS13	Q76LX8	1427 aa		11.48	□□□□□ -0.57
NR1I3-233	ENST00000515452	SOS2	Q07890	1332 aa	Predicted RBP	11.47	□□□□□ -0.57
NR1I3-233	ENST00000515452	PSD	A5PKW4	1024 aa	Predicted RBP	11.47	□□□□□ -0.57
NR1I3-233	ENST00000515452	NHSL1	Q5SYE7	1610 aa		11.46	□□□□□ -0.57
NR1I3-233	ENST00000515452	BAG6	P46379	1132 aa		11.45	□□□□□ -0.58
NR1I3-233	ENST00000515452	ZNF326	Q5BKZ1	582 aa	Known RBP	11.45	□□□□□ -0.58
NR1I3-233	ENST00000515452	PPP4R3CP	Q6ZMV5	832 aa		11.45	□□□□□ -0.58
NR1I3-233	ENST00000515452	DCAF8L1	A6NGE4	600 aa		11.44	□□□□□ -0.58
NR1I3-233	ENST00000515452	BCL9L	Q86UU0	1499 aa		11.44	□□□□□ -0.58
NR1I3-233	ENST00000515452	PTPRU	Q92729	1446 aa		11.43	□□□□□ -0.58
NR1I3-233	ENST00000515452	RGL3	Q3MIN7	710 aa		11.43	□□□□□ -0.58
NR1I3-233	ENST00000515452	UNC5CL	Q8IV45	518 aa		11.43	□□□□□ -0.58
NR1I3-233	ENST00000515452	EP400	Q96L91	3159 aa		11.42	□□□□□ -0.58
NR1I3-233	ENST00000515452	ORAI2	Q96SN7	254 aa		11.42	□□□□□ -0.58
NR1I3-233	ENST00000515452	SIN3A	Q96ST3	1273 aa		11.42	□□□□□ -0.58
NR1I3-233	ENST00000515452	ONECUT3	O60422	494 aa	Predicted RBP	11.41	□□□□□ -0.58
NR1I3-233	ENST00000515452	SEPT12	Q8IYM1	358 aa		11.41	□□□□□ -0.58
NR1I3-233	ENST00000515452	MYOM2	P54296	1465 aa		11.4	□□□□□ -0.58
NR1I3-233	ENST00000515452	KRT27	Q7Z3Y8	459 aa		11.4	□□□□□ -0.58
NR1I3-233	ENST00000515452	ADGRF5	Q8IZF2	1346 aa		11.39	□□□□□ -0.59
NR1I3-233	ENST00000515452	C1orf167	Q5SNV9	1468 aa		11.39	□□□□□ -0.59
NR1I3-233	ENST00000515452	XRN1	Q8IZH2	1706 aa	Known RBP	11.39	□□□□□ -0.59
NR1I3-233	ENST00000515452	NRXN1	Q9ULB1	1477 aa		11.38	□□□□□ -0.59
NR1I3-233	ENST00000515452	RPGRIP1L	Q68CZ1	1315 aa		11.38	□□□□□ -0.59
NR1I3-233	ENST00000515452	R3HDM1	Q15032	1099 aa	Known RBP	11.38	□□□□□ -0.59
NR1I3-233	ENST00000515452	PIK3C2G	O75747	1445 aa		11.37	□□□□□ -0.59
NR1I3-233	ENST00000515452	ADGRL3	Q9HAR2	1447 aa		11.37	□□□□□ -0.59
NR1I3-233	ENST00000515452	LAMC1	P11047	1609 aa		11.37	□□□□□ -0.59
NR1I3-233	ENST00000515452	EN1	Q05925	392 aa	Predicted RBP	11.36	□□□□□ -0.59
NR1I3-233	ENST00000515452	NEUROD1	Q13562	356 aa		11.36	□□□□□ -0.59
NR1I3-233	ENST00000515452	MET	P08581	1390 aa		11.36	□□□□□ -0.59
NR1I3-233	ENST00000515452	RALGAPB	Q86X10	1494 aa		11.36	□□□□□ -0.59
NR1I3-233	ENST00000515452	NPHP3	Q7Z494	1330 aa		11.35	□□□□□ -0.59
NR1I3-233	ENST00000515452	VPS72	Q15906	364 aa		11.35	□□□□□ -0.59
NR1I3-233	ENST00000515452	KNDC1	Q76NI1	1749 aa		11.35	□□□□□ -0.59
NR1I3-233	ENST00000515452	VGF	O15240	615 aa	Predicted RBP	11.34	□□□□□ -0.59
NR1I3-233	ENST00000515452	ESCO1	Q5FWF5	840 aa		11.34	□□□□□ -0.59
NR1I3-233	ENST00000515452	DCAF11	Q8TEB1	546 aa		11.34	□□□□□ -0.59
NR1I3-233	ENST00000515452	KDM2A	Q9Y2K7	1162 aa		11.34	□□□□□ -0.59
NR1I3-233	ENST00000515452	KIAA1210	Q9ULL0	1709 aa		11.34	□□□□□ -0.59
NR1I3-233	ENST00000515452	SENP3-EIF4A1	A0A087X0R7	540 aa		11.33	□□□□□ -0.6
NR1I3-233	ENST00000515452	KCNA4	P22459	653 aa		11.33	□□□□□ -0.6
NR1I3-233	ENST00000515452	CCDC9	Q9Y3X0	531 aa	Known RBP	11.33	□□□□□ -0.6
NR1I3-233	ENST00000515452	TRPM1	Q7Z4N2	1603 aa		11.33	□□□□□ -0.6
NR1I3-233	ENST00000515452	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.33	□□□□□ -0.6
NR1I3-233	ENST00000515452	NALCN	Q8IZF0	1738 aa		11.32	□□□□□ -0.6
NR1I3-233	ENST00000515452	SLIT2	O94813	1529 aa		11.32	□□□□□ -0.6
NR1I3-233	ENST00000515452	FOXO3	O43524	673 aa		11.32	□□□□□ -0.6
NR1I3-233	ENST00000515452	L3MBTL2	Q969R5	705 aa		11.32	□□□□□ -0.6
NR1I3-233	ENST00000515452	ADGRB1	O14514	1584 aa		11.32	□□□□□ -0.6
NR1I3-233	ENST00000515452	GLI3	P10071	1580 aa		11.32	□□□□□ -0.6
NR1I3-233	ENST00000515452	LRPPRC	P42704	1394 aa	Known RBP	11.31	□□□□□ -0.6
NR1I3-233	ENST00000515452	BRWD3	Q6RI45	1802 aa		11.3	□□□□□ -0.6
NR1I3-233	ENST00000515452	ARHGEF28	Q8N1W1	1705 aa	Known RBP	11.3	□□□□□ -0.6
NR1I3-233	ENST00000515452	PRAG1	Q86YV5	1406 aa		11.3	□□□□□ -0.6
NR1I3-233	ENST00000515452	CFAP70	Q5T0N1	1121 aa		11.3	□□□□□ -0.6
NR1I3-233	ENST00000515452		A0A0G2JS52	829 aa		11.29	□□□□□ -0.6
NR1I3-233	ENST00000515452	MYT1	Q01538	1121 aa		11.29	□□□□□ -0.6
NR1I3-233	ENST00000515452	EZH2	Q15910	746 aa	Known RBP	11.29	□□□□□ -0.6
NR1I3-233	ENST00000515452	TMEM132E	Q6IEE7	984 aa		11.29	□□□□□ -0.6
NR1I3-233	ENST00000515452	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.29	□□□□□ -0.6
NR1I3-233	ENST00000515452	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.29	□□□□□ -0.6
NR1I3-233	ENST00000515452	HAP1	P54257	671 aa	Predicted RBP	11.28	□□□□□ -0.6
NR1I3-233	ENST00000515452	C1QTNF8	P60827	252 aa		11.28	□□□□□ -0.6
NR1I3-233	ENST00000515452	XPC	Q01831	940 aa	Predicted RBP	11.28	□□□□□ -0.6
NR1I3-233	ENST00000515452	NBPF8	Q3BBV2	869 aa		11.28	□□□□□ -0.6
NR1I3-233	ENST00000515452	NBPF14	Q5TI25	921 aa		11.28	□□□□□ -0.6
NR1I3-233	ENST00000515452	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.28	□□□□□ -0.6
NR1I3-233	ENST00000515452	C14orf93	Q9H972	538 aa	Known RBP	11.28	□□□□□ -0.6
NR1I3-233	ENST00000515452	MARF1	Q9Y4F3	1742 aa	Known RBP	11.28	□□□□□ -0.6
NR1I3-233	ENST00000515452	CCER1	Q8TC90	406 aa	Predicted RBP	11.27	□□□□□ -0.61
NR1I3-233	ENST00000515452	CAMKK2	Q96RR4	588 aa		11.27	□□□□□ -0.61
NR1I3-233	ENST00000515452	SPON1	Q9HCB6	807 aa		11.27	□□□□□ -0.61
NR1I3-233	ENST00000515452	TONSL	Q96HA7	1378 aa		11.27	□□□□□ -0.61
NR1I3-233	ENST00000515452	ROBO2	Q9HCK4	1378 aa		11.27	□□□□□ -0.61
NR1I3-233	ENST00000515452	YTHDC2	Q9H6S0	1430 aa	Known RBP	11.26	□□□□□ -0.61
NR1I3-233	ENST00000515452	SPATA31A3	Q5VYP0	1347 aa		11.26	□□□□□ -0.61
NR1I3-233	ENST00000515452	TECPR2	O15040	1411 aa		11.26	□□□□□ -0.61
NR1I3-233	ENST00000515452	KCNQ2	O43526	872 aa		11.25	□□□□□ -0.61
NR1I3-233	ENST00000515452	CLSPN	Q9HAW4	1339 aa		11.25	□□□□□ -0.61
NR1I3-233	ENST00000515452	RGPD8	O14715	1765 aa	Predicted RBP	11.24	□□□□□ -0.61
NR1I3-233	ENST00000515452	FAM98C	Q17RN3	349 aa	Known RBP	11.24	□□□□□ -0.61
NR1I3-233	ENST00000515452	NBPF1	Q3BBV0	1214 aa		11.24	□□□□□ -0.61
NR1I3-233	ENST00000515452	STK26	Q9P289	416 aa		11.24	□□□□□ -0.61
NR1I3-233	ENST00000515452	PLEKHH1	Q9ULM0	1364 aa		11.24	□□□□□ -0.61
NR1I3-233	ENST00000515452	DISP2	A7MBM2	1401 aa		11.24	□□□□□ -0.61
NR1I3-233	ENST00000515452	PXDN	Q92626	1479 aa		11.24	□□□□□ -0.61
NR1I3-233	ENST00000515452	DLC1	Q96QB1	1528 aa		11.24	□□□□□ -0.61
NR1I3-233	ENST00000515452	PSME1	Q06323	249 aa		11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms