RNA–Protein interactions for RNA: ENST00000515418.1

CPNE4-213, Transcript of copine 4, humanhuman

TSL 5

Gene CPNE4, Length 1,958 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-213ENST00000515418 TULP4Q9NRJ4 1543 aa12.49□□□□□ -0.41
CPNE4-213ENST00000515418 CDK19Q9BWU1 502 aa12.49□□□□□ -0.41
CPNE4-213ENST00000515418 CENPBP07199 599 aaPredicted RBP12.48□□□□□ -0.41
CPNE4-213ENST00000515418 ANKLE2Q86XL3 938 aa12.47□□□□□ -0.41
CPNE4-213ENST00000515418 FAM9BQ8IZU0 186 aa12.47□□□□□ -0.41
CPNE4-213ENST00000515418 TBX22Q9Y458 520 aa12.47□□□□□ -0.41
CPNE4-213ENST00000515418 KTN1Q86UP2 1357 aaKnown RBP12.47□□□□□ -0.41
CPNE4-213ENST00000515418 MED14O60244 1454 aa12.47□□□□□ -0.41
CPNE4-213ENST00000515418 RALBP1Q15311 655 aa12.47□□□□□ -0.41
CPNE4-213ENST00000515418 AMER1Q5JTC6 1135 aaPredicted RBP12.47□□□□□ -0.41
CPNE4-213ENST00000515418 AMOTL2Q9Y2J4 779 aa12.47□□□□□ -0.41
CPNE4-213ENST00000515418 PTPRUQ92729 1446 aa12.46□□□□□ -0.41
CPNE4-213ENST00000515418 ROBO2Q9HCK4 1378 aa12.46□□□□□ -0.42
CPNE4-213ENST00000515418 DLC1Q96QB1 1528 aa12.45□□□□□ -0.42
CPNE4-213ENST00000515418 PARD3Q8TEW0 1356 aa12.45□□□□□ -0.42
CPNE4-213ENST00000515418 MYBBP1AQ9BQG0 1328 aaKnown RBP12.44□□□□□ -0.42
CPNE4-213ENST00000515418 KDM4FA0A1W2PPD8 638 aa12.44□□□□□ -0.42
CPNE4-213ENST00000515418 SIRT1Q96EB6 747 aa12.44□□□□□ -0.42
CPNE4-213ENST00000515418 PUS7Q96PZ0 661 aaKnown RBP12.44□□□□□ -0.42
CPNE4-213ENST00000515418 NCKAP5LQ9HCH0 1330 aa12.43□□□□□ -0.42
CPNE4-213ENST00000515418 ZNF142P52746 1687 aaPredicted RBP12.43□□□□□ -0.42
CPNE4-213ENST00000515418 CABP1Q9NZU7 370 aa12.43□□□□□ -0.42
CPNE4-213ENST00000515418 WASLO00401 505 aaPredicted RBP12.42□□□□□ -0.42
CPNE4-213ENST00000515418 TECPR2O15040 1411 aa12.42□□□□□ -0.42
CPNE4-213ENST00000515418 FAM135BQ49AJ0 1406 aa12.41□□□□□ -0.42
CPNE4-213ENST00000515418 NUTM2FA1L443 756 aa12.41□□□□□ -0.42
CPNE4-213ENST00000515418 KCNA6P17658 529 aa12.41□□□□□ -0.42
CPNE4-213ENST00000515418 RBM33Q96EV2 1170 aaKnown RBP12.4□□□□□ -0.42
CPNE4-213ENST00000515418 NSD3Q9BZ95 1437 aa12.4□□□□□ -0.42
CPNE4-213ENST00000515418 CPS1P31327 1500 aa12.4□□□□□ -0.42
CPNE4-213ENST00000515418 KNDC1Q76NI1 1749 aa12.4□□□□□ -0.42
CPNE4-213ENST00000515418 SENP3-EIF4A1A0A087X0R7 540 aa12.39□□□□□ -0.43
CPNE4-213ENST00000515418 HNRNPUQ00839 825 aaKnown RBP eCLIP12.39□□□□□ -0.43
CPNE4-213ENST00000515418 NLRP13Q86W25 1043 aa12.39□□□□□ -0.43
CPNE4-213ENST00000515418 PNISRQ8TF01 805 aaKnown RBP12.39□□□□□ -0.43
CPNE4-213ENST00000515418 PPP2R1AP30153 589 aa12.39□□□□□ -0.43
CPNE4-213ENST00000515418 HSPA2P54652 639 aa12.39□□□□□ -0.43
CPNE4-213ENST00000515418 NUDT16Q96DE0 195 aaKnown RBP12.39□□□□□ -0.43
CPNE4-213ENST00000515418 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.39□□□□□ -0.43
CPNE4-213ENST00000515418 ATAD2Q6PL18 1390 aa12.39□□□□□ -0.43
CPNE4-213ENST00000515418 TNNT2P45379 298 aaPredicted RBP12.38□□□□□ -0.43
CPNE4-213ENST00000515418 A0A1W2PP64 1363 aa12.38□□□□□ -0.43
CPNE4-213ENST00000515418 BRD4O60885 1362 aaPredicted RBP12.38□□□□□ -0.43
CPNE4-213ENST00000515418 ANKRD36BQ8N2N9 1353 aa12.38□□□□□ -0.43
CPNE4-213ENST00000515418 TERF2IPQ9NYB0 399 aa12.37□□□□□ -0.43
CPNE4-213ENST00000515418 PRR36Q9H6K5 1346 aa12.36□□□□□ -0.43
CPNE4-213ENST00000515418 NPC1L1Q9UHC9 1359 aa12.36□□□□□ -0.43
CPNE4-213ENST00000515418 NPHP4O75161 1426 aaPredicted RBP12.36□□□□□ -0.43
CPNE4-213ENST00000515418 CD163L1Q9NR16 1453 aa12.36□□□□□ -0.43
CPNE4-213ENST00000515418 DIP2AQ14689 1571 aa12.36□□□□□ -0.43
CPNE4-213ENST00000515418 MORC1Q86VD1 984 aa12.36□□□□□ -0.43
CPNE4-213ENST00000515418 CGNL1Q0VF96 1302 aa12.36□□□□□ -0.43
CPNE4-213ENST00000515418 HDGFL2Q7Z4V5 671 aaPredicted RBP12.35□□□□□ -0.43
CPNE4-213ENST00000515418 CCDC61Q9Y6R9 512 aa12.35□□□□□ -0.43
CPNE4-213ENST00000515418 NINLQ9Y2I6 1382 aa12.34□□□□□ -0.43
CPNE4-213ENST00000515418 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.34□□□□□ -0.43
CPNE4-213ENST00000515418 GGNBP2Q9H3C7 697 aa12.34□□□□□ -0.43
CPNE4-213ENST00000515418 CHD2O14647 1828 aaKnown RBP12.34□□□□□ -0.43
CPNE4-213ENST00000515418 PPIP5K1Q6PFW1 1433 aa12.34□□□□□ -0.43
CPNE4-213ENST00000515418 PIK3R4Q99570 1358 aa12.34□□□□□ -0.43
CPNE4-213ENST00000515418 FYB1O15117 783 aa12.33□□□□□ -0.44
CPNE4-213ENST00000515418 PTCH1Q13635 1447 aa12.33□□□□□ -0.44
CPNE4-213ENST00000515418 XRN1Q8IZH2 1706 aaKnown RBP12.33□□□□□ -0.44
CPNE4-213ENST00000515418 PMFBP1Q8TBY8 1022 aa12.3□□□□□ -0.44
CPNE4-213ENST00000515418 RGPD8O14715 1765 aaPredicted RBP12.3□□□□□ -0.44
CPNE4-213ENST00000515418 ATP7BP35670 1465 aa12.3□□□□□ -0.44
CPNE4-213ENST00000515418 ZRANB1Q9UGI0 708 aa12.3□□□□□ -0.44
CPNE4-213ENST00000515418 FBLN1P23142 703 aa12.29□□□□□ -0.44
CPNE4-213ENST00000515418 CPSF1Q10570 1443 aaKnown RBP12.29□□□□□ -0.44
CPNE4-213ENST00000515418 ADAMTS8Q9UP79 889 aa12.29□□□□□ -0.44
CPNE4-213ENST00000515418 ACEP12821 1306 aa12.29□□□□□ -0.44
CPNE4-213ENST00000515418 ADGRB2O60241 1585 aa12.29□□□□□ -0.44
CPNE4-213ENST00000515418 MTHFSP49914 203 aa12.28□□□□□ -0.44
CPNE4-213ENST00000515418 NME9Q86XW9 330 aa12.28□□□□□ -0.44
CPNE4-213ENST00000515418 SALL2Q9Y467 1007 aaPredicted RBP12.28□□□□□ -0.44
CPNE4-213ENST00000515418 USP32Q8NFA0 1604 aa12.28□□□□□ -0.44
CPNE4-213ENST00000515418 PLEKHG3A1L390 1219 aa12.27□□□□□ -0.44
CPNE4-213ENST00000515418 C14orf37Q86TY3 774 aa12.27□□□□□ -0.44
CPNE4-213ENST00000515418 PROSER2Q86WR7 435 aaPredicted RBP12.27□□□□□ -0.44
CPNE4-213ENST00000515418 GTF3C3Q9Y5Q9 886 aa12.27□□□□□ -0.44
CPNE4-213ENST00000515418 SCAF1Q9H7N4 1312 aaKnown RBP12.27□□□□□ -0.45
CPNE4-213ENST00000515418 ZNF692Q9BU19 519 aaPredicted RBP12.27□□□□□ -0.45
CPNE4-213ENST00000515418 LMTK3Q96Q04 1460 aa12.26□□□□□ -0.45
CPNE4-213ENST00000515418 NSD2O96028 1365 aa12.25□□□□□ -0.45
CPNE4-213ENST00000515418 WDR43Q15061 677 aaKnown RBP eCLIP12.25□□□□□ -0.45
CPNE4-213ENST00000515418 CDC42BPGQ6DT37 1551 aa12.25□□□□□ -0.45
CPNE4-213ENST00000515418 NGDNQ8NEJ9 315 aaKnown RBP12.25□□□□□ -0.45
CPNE4-213ENST00000515418 NKTRP30414 1462 aaKnown RBP12.24□□□□□ -0.45
CPNE4-213ENST00000515418 EDC4Q6P2E9 1401 aaKnown RBP12.24□□□□□ -0.45
CPNE4-213ENST00000515418 NALCNQ8IZF0 1738 aa12.24□□□□□ -0.45
CPNE4-213ENST00000515418 ZBED9Q6R2W3 1325 aa12.24□□□□□ -0.45
CPNE4-213ENST00000515418 AKAP12Q02952 1782 aa12.23□□□□□ -0.45
CPNE4-213ENST00000515418 TTC21BQ7Z4L5 1316 aa12.23□□□□□ -0.45
CPNE4-213ENST00000515418 TOPAZ1Q8N9V7 1692 aa12.23□□□□□ -0.45
CPNE4-213ENST00000515418 ITSN1Q15811 1721 aa12.23□□□□□ -0.45
CPNE4-213ENST00000515418 CCDC146Q8IYE0 955 aa12.23□□□□□ -0.45
CPNE4-213ENST00000515418 KIF20BQ96Q89 1820 aa12.23□□□□□ -0.45
CPNE4-213ENST00000515418 MON2Q7Z3U7 1717 aa12.22□□□□□ -0.45
CPNE4-213ENST00000515418 STRCQ7RTU9 1775 aa12.22□□□□□ -0.45
CPNE4-213ENST00000515418 POLR3AO14802 1390 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms