RNA–Protein interactions for RNA: ENST00000512531.1

MSH3-203, Transcript of mutS homolog 3, humanhuman

TSL 5

Gene MSH3, Length 531 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-203ENST00000512531 ROBO1Q9Y6N7 1651 aa13.48□□□□□ -0.25
MSH3-203ENST00000512531 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.47□□□□□ -0.25
MSH3-203ENST00000512531 SLAIN2Q9P270 581 aa13.47□□□□□ -0.25
MSH3-203ENST00000512531 TBX22Q9Y458 520 aa13.47□□□□□ -0.25
MSH3-203ENST00000512531 NAIPQ13075 1403 aa13.47□□□□□ -0.25
MSH3-203ENST00000512531 TONSLQ96HA7 1378 aa13.46□□□□□ -0.25
MSH3-203ENST00000512531 PIK3R4Q99570 1358 aa13.45□□□□□ -0.26
MSH3-203ENST00000512531 CHD2O14647 1828 aaKnown RBP13.45□□□□□ -0.26
MSH3-203ENST00000512531 JCADQ9P266 1359 aa13.45□□□□□ -0.26
MSH3-203ENST00000512531 GTPBP6O43824 516 aaPredicted RBP13.44□□□□□ -0.26
MSH3-203ENST00000512531 PLEKHG5O94827 1062 aa13.44□□□□□ -0.26
MSH3-203ENST00000512531 POTEAQ6S8J7 498 aa13.44□□□□□ -0.26
MSH3-203ENST00000512531 RIMS2Q9UQ26 1411 aa13.44□□□□□ -0.26
MSH3-203ENST00000512531 TMEM131LA2VDJ0 1609 aa13.43□□□□□ -0.26
MSH3-203ENST00000512531 DIP2AQ14689 1571 aa13.42□□□□□ -0.26
MSH3-203ENST00000512531 PPP1R15AO75807 674 aaPredicted RBP13.42□□□□□ -0.26
MSH3-203ENST00000512531 CACNB1Q02641 598 aaPredicted RBP13.42□□□□□ -0.26
MSH3-203ENST00000512531 UNC13BO14795 1591 aa13.41□□□□□ -0.26
MSH3-203ENST00000512531 NEUROD1Q13562 356 aa13.41□□□□□ -0.26
MSH3-203ENST00000512531 TRIM52Q96A61 297 aa13.41□□□□□ -0.26
MSH3-203ENST00000512531 SPATA31A6Q5VVP1 1343 aa13.4□□□□□ -0.26
MSH3-203ENST00000512531 PHLPP1O60346 1717 aa13.4□□□□□ -0.26
MSH3-203ENST00000512531 MNX1P50219 401 aaPredicted RBP13.4□□□□□ -0.26
MSH3-203ENST00000512531 GSE1Q14687 1217 aa13.4□□□□□ -0.26
MSH3-203ENST00000512531 CADPS2Q86UW7 1296 aa13.4□□□□□ -0.26
MSH3-203ENST00000512531 C19orf44Q9H6X5 657 aa13.4□□□□□ -0.26
MSH3-203ENST00000512531 ADAMTS13Q76LX8 1427 aa13.39□□□□□ -0.27
MSH3-203ENST00000512531 RBM33Q96EV2 1170 aaKnown RBP13.39□□□□□ -0.27
MSH3-203ENST00000512531 RIOK3O14730 519 aaKnown RBP13.38□□□□□ -0.27
MSH3-203ENST00000512531 MYO5BQ9ULV0 1848 aa13.38□□□□□ -0.27
MSH3-203ENST00000512531 COL16A1Q07092 1604 aaPredicted RBP13.38□□□□□ -0.27
MSH3-203ENST00000512531 AHDC1Q5TGY3 1603 aaPredicted RBP13.37□□□□□ -0.27
MSH3-203ENST00000512531 DCCP43146 1447 aa13.36□□□□□ -0.27
MSH3-203ENST00000512531 IQGAP3Q86VI3 1631 aa13.35□□□□□ -0.27
MSH3-203ENST00000512531 TRPM2O94759 1503 aa13.35□□□□□ -0.27
MSH3-203ENST00000512531 E9PCH4 1651 aa13.35□□□□□ -0.27
MSH3-203ENST00000512531 ATF3P18847 181 aa13.35□□□□□ -0.27
MSH3-203ENST00000512531 ZNF772Q68DY9 489 aaPredicted RBP13.35□□□□□ -0.27
MSH3-203ENST00000512531 CREBZFQ9NS37 354 aa13.35□□□□□ -0.27
MSH3-203ENST00000512531 NBR1Q14596 966 aa13.34□□□□□ -0.27
MSH3-203ENST00000512531 DCAF8Q5TAQ9 597 aa13.34□□□□□ -0.27
MSH3-203ENST00000512531 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.33□□□□□ -0.27
MSH3-203ENST00000512531 C14orf37Q86TY3 774 aa13.33□□□□□ -0.28
MSH3-203ENST00000512531 SIN3AQ96ST3 1273 aa13.33□□□□□ -0.28
MSH3-203ENST00000512531 SHPRHQ149N8 1683 aa13.33□□□□□ -0.28
MSH3-203ENST00000512531 AMOTL2Q9Y2J4 779 aa13.32□□□□□ -0.28
MSH3-203ENST00000512531 NUP155O75694 1391 aa13.32□□□□□ -0.28
MSH3-203ENST00000512531 MPHOSPH9Q99550 1183 aa13.31□□□□□ -0.28
MSH3-203ENST00000512531 LRP6O75581 1613 aa13.31□□□□□ -0.28
MSH3-203ENST00000512531 SETBP1Q9Y6X0 1596 aa13.3□□□□□ -0.28
MSH3-203ENST00000512531 BRINP3Q76B58 766 aa13.3□□□□□ -0.28
MSH3-203ENST00000512531 PTPRUQ92729 1446 aa13.3□□□□□ -0.28
MSH3-203ENST00000512531 CDK12Q9NYV4 1490 aaPredicted RBP13.29□□□□□ -0.28
MSH3-203ENST00000512531 MEX3CQ5U5Q3 659 aaKnown RBP13.29□□□□□ -0.28
MSH3-203ENST00000512531 RASEFQ8IZ41 740 aa13.29□□□□□ -0.28
MSH3-203ENST00000512531 XRN1Q8IZH2 1706 aaKnown RBP13.28□□□□□ -0.28
MSH3-203ENST00000512531 STK25O00506 426 aa13.27□□□□□ -0.29
MSH3-203ENST00000512531 NUTM2DQ5VT03 806 aaPredicted RBP13.27□□□□□ -0.29
MSH3-203ENST00000512531 MST1RQ04912 1400 aa13.26□□□□□ -0.29
MSH3-203ENST00000512531 ASXL1Q8IXJ9 1541 aa13.26□□□□□ -0.29
MSH3-203ENST00000512531 UPF1Q92900 1129 aaKnown RBP eCLIP13.26□□□□□ -0.29
MSH3-203ENST00000512531 LRRC59Q96AG4 307 aaKnown RBP13.26□□□□□ -0.29
MSH3-203ENST00000512531 NRXN3Q9Y4C0 1643 aa13.26□□□□□ -0.29
MSH3-203ENST00000512531 RXRBP28702 533 aa13.25□□□□□ -0.29
MSH3-203ENST00000512531 SETD1AO15047 1707 aaKnown RBP13.25□□□□□ -0.29
MSH3-203ENST00000512531 VGFO15240 615 aaPredicted RBP13.24□□□□□ -0.29
MSH3-203ENST00000512531 SPHKAPQ2M3C7 1700 aa13.24□□□□□ -0.29
MSH3-203ENST00000512531 ADGRL3Q9HAR2 1447 aa13.23□□□□□ -0.29
MSH3-203ENST00000512531 CHRM1P11229 460 aaPredicted RBP13.23□□□□□ -0.29
MSH3-203ENST00000512531 NHSL1Q5SYE7 1610 aa13.23□□□□□ -0.29
MSH3-203ENST00000512531 METP08581 1390 aa13.22□□□□□ -0.29
MSH3-203ENST00000512531 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.22□□□□□ -0.29
MSH3-203ENST00000512531 ZFP91Q96JP5 570 aaPredicted RBP13.22□□□□□ -0.29
MSH3-203ENST00000512531 SGIP1Q9BQI5 828 aa13.22□□□□□ -0.29
MSH3-203ENST00000512531 PRAG1Q86YV5 1406 aa13.22□□□□□ -0.29
MSH3-203ENST00000512531 ZNF326Q5BKZ1 582 aaKnown RBP13.21□□□□□ -0.29
MSH3-203ENST00000512531 SPDYE1Q8NFV5 336 aaPredicted RBP13.21□□□□□ -0.29
MSH3-203ENST00000512531 AFF2P51816 1311 aa13.2□□□□□ -0.3
MSH3-203ENST00000512531 FAM212AQ96EL1 285 aa13.2□□□□□ -0.3
MSH3-203ENST00000512531 PTCH1Q13635 1447 aa13.2□□□□□ -0.3
MSH3-203ENST00000512531 LAMC1P11047 1609 aa13.2□□□□□ -0.3
MSH3-203ENST00000512531 PNPLA6Q8IY17 1366 aa13.2□□□□□ -0.3
MSH3-203ENST00000512531 NEXMIFQ5QGS0 1516 aa13.19□□□□□ -0.3
MSH3-203ENST00000512531 ANP32CO43423 234 aa13.19□□□□□ -0.3
MSH3-203ENST00000512531 RBM6P78332 1123 aaKnown RBP13.19□□□□□ -0.3
MSH3-203ENST00000512531 EIF4G2P78344 907 aaKnown RBP eCLIP13.19□□□□□ -0.3
MSH3-203ENST00000512531 BCL11BQ9C0K0 894 aaPredicted RBP13.19□□□□□ -0.3
MSH3-203ENST00000512531 ANKRD30BQ9BXX2 1392 aa13.19□□□□□ -0.3
MSH3-203ENST00000512531 RPGRIP1LQ68CZ1 1315 aa13.18□□□□□ -0.3
MSH3-203ENST00000512531 NUTM2BA6NNL0 878 aaPredicted RBP13.18□□□□□ -0.3
MSH3-203ENST00000512531 NUTM2EB1AL46 878 aaPredicted RBP13.18□□□□□ -0.3
MSH3-203ENST00000512531 NUTM2AQ8IVF1 878 aaPredicted RBP13.18□□□□□ -0.3
MSH3-203ENST00000512531 C1orf167Q5SNV9 1468 aa13.17□□□□□ -0.3
MSH3-203ENST00000512531 YTHDC1Q96MU7 727 aaKnown RBP13.17□□□□□ -0.3
MSH3-203ENST00000512531 CLEC11AQ9Y240 323 aa13.16□□□□□ -0.3
MSH3-203ENST00000512531 STK24Q9Y6E0 443 aa13.16□□□□□ -0.3
MSH3-203ENST00000512531 CLTCL1P53675 1640 aa13.16□□□□□ -0.3
MSH3-203ENST00000512531 SOS2Q07890 1332 aaPredicted RBP13.15□□□□□ -0.3
MSH3-203ENST00000512531 AKT1S1Q96B36 256 aa13.15□□□□□ -0.3
MSH3-203ENST00000512531 NGLY1Q96IV0 654 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms