RNA–Protein interactions for RNA: ENST00000506858.2

SCAMP1-202, Transcript of secretory carrier membrane protein 1, humanhuman

TSL 1 (best)

Gene SCAMP1, Length 1,603 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP1-202ENST00000506858 ADGRB1O14514 1584 aa12.56□□□□□ -0.4
SCAMP1-202ENST00000506858 PRAM1Q96QH2 718 aa12.55□□□□□ -0.4
SCAMP1-202ENST00000506858 TRPM1Q7Z4N2 1603 aa12.54□□□□□ -0.4
SCAMP1-202ENST00000506858 PIK3R4Q99570 1358 aa12.54□□□□□ -0.4
SCAMP1-202ENST00000506858 DIP2AQ14689 1571 aa12.53□□□□□ -0.4
SCAMP1-202ENST00000506858 CHD2O14647 1828 aaKnown RBP12.53□□□□□ -0.4
SCAMP1-202ENST00000506858 POGKQ9P215 609 aa12.53□□□□□ -0.4
SCAMP1-202ENST00000506858 TMEM94Q12767 1356 aa12.53□□□□□ -0.4
SCAMP1-202ENST00000506858 ABCC11Q96J66 1382 aa12.53□□□□□ -0.4
SCAMP1-202ENST00000506858 RALGAPBQ86X10 1494 aa12.53□□□□□ -0.4
SCAMP1-202ENST00000506858 C14orf37Q86TY3 774 aa12.52□□□□□ -0.4
SCAMP1-202ENST00000506858 PLSCR2Q9NRY7 297 aa12.52□□□□□ -0.4
SCAMP1-202ENST00000506858 MINK1Q8N4C8 1332 aaPredicted RBP12.52□□□□□ -0.41
SCAMP1-202ENST00000506858 LTBP4Q8N2S1 1624 aa12.52□□□□□ -0.41
SCAMP1-202ENST00000506858 GPRASP1Q5JY77 1395 aa12.51□□□□□ -0.41
SCAMP1-202ENST00000506858 LRRC7Q96NW7 1537 aa12.5□□□□□ -0.41
SCAMP1-202ENST00000506858 ST20-MTHFSA0A0A6YYL1 179 aa12.5□□□□□ -0.41
SCAMP1-202ENST00000506858 NUTM2FA1L443 756 aa12.5□□□□□ -0.41
SCAMP1-202ENST00000506858 XRN1Q8IZH2 1706 aaKnown RBP12.49□□□□□ -0.41
SCAMP1-202ENST00000506858 KIAA1210Q9ULL0 1709 aa12.49□□□□□ -0.41
SCAMP1-202ENST00000506858 RBM42Q9BTD8 480 aaKnown RBP12.49□□□□□ -0.41
SCAMP1-202ENST00000506858 LAMC1P11047 1609 aa12.49□□□□□ -0.41
SCAMP1-202ENST00000506858 HSPA5P11021 654 aaKnown RBP12.48□□□□□ -0.41
SCAMP1-202ENST00000506858 CERKQ8TCT0 537 aa12.48□□□□□ -0.41
SCAMP1-202ENST00000506858 NWD1Q149M9 1564 aa12.48□□□□□ -0.41
SCAMP1-202ENST00000506858 USP47Q96K76 1375 aa12.48□□□□□ -0.41
SCAMP1-202ENST00000506858 ZEB1P37275 1124 aaPredicted RBP12.48□□□□□ -0.41
SCAMP1-202ENST00000506858 TECPR2O15040 1411 aa12.47□□□□□ -0.41
SCAMP1-202ENST00000506858 CENPJQ9HC77 1338 aaPredicted RBP12.47□□□□□ -0.41
SCAMP1-202ENST00000506858 SIRT1Q96EB6 747 aa12.46□□□□□ -0.41
SCAMP1-202ENST00000506858 PTCH1Q13635 1447 aa12.45□□□□□ -0.42
SCAMP1-202ENST00000506858 NKTRP30414 1462 aaKnown RBP12.45□□□□□ -0.42
SCAMP1-202ENST00000506858 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.45□□□□□ -0.42
SCAMP1-202ENST00000506858 CPS1P31327 1500 aa12.44□□□□□ -0.42
SCAMP1-202ENST00000506858 FAM135BQ49AJ0 1406 aa12.44□□□□□ -0.42
SCAMP1-202ENST00000506858 XIRP1Q702N8 1843 aaKnown RBP12.44□□□□□ -0.42
SCAMP1-202ENST00000506858 EIF4G2P78344 907 aaKnown RBP eCLIP12.44□□□□□ -0.42
SCAMP1-202ENST00000506858 TESK2Q96S53 571 aa12.44□□□□□ -0.42
SCAMP1-202ENST00000506858 C19orf44Q9H6X5 657 aa12.44□□□□□ -0.42
SCAMP1-202ENST00000506858 ATF5Q9Y2D1 282 aaPredicted RBP12.44□□□□□ -0.42
SCAMP1-202ENST00000506858 ARHGEF28Q8N1W1 1705 aaKnown RBP12.43□□□□□ -0.42
SCAMP1-202ENST00000506858 DLC1Q96QB1 1528 aa12.43□□□□□ -0.42
SCAMP1-202ENST00000506858 CDK19Q9BWU1 502 aa12.43□□□□□ -0.42
SCAMP1-202ENST00000506858 CABP2Q9NPB3 220 aa12.43□□□□□ -0.42
SCAMP1-202ENST00000506858 KNDC1Q76NI1 1749 aa12.42□□□□□ -0.42
SCAMP1-202ENST00000506858 UBAP1LF5GYI3 381 aa12.42□□□□□ -0.42
SCAMP1-202ENST00000506858 ATF3P18847 181 aa12.42□□□□□ -0.42
SCAMP1-202ENST00000506858 C11orf95C9JLR9 678 aaPredicted RBP12.41□□□□□ -0.42
SCAMP1-202ENST00000506858 WASLO00401 505 aaPredicted RBP12.41□□□□□ -0.42
SCAMP1-202ENST00000506858 PIP4K2BP78356 416 aa12.41□□□□□ -0.42
SCAMP1-202ENST00000506858 POLR3GLQ9BT43 218 aa12.41□□□□□ -0.42
SCAMP1-202ENST00000506858 MSH6P52701 1360 aa12.41□□□□□ -0.42
SCAMP1-202ENST00000506858 ADGRL3Q9HAR2 1447 aa12.41□□□□□ -0.42
SCAMP1-202ENST00000506858 EIF3AQ14152 1382 aaKnown RBP12.4□□□□□ -0.42
SCAMP1-202ENST00000506858 NALCNQ8IZF0 1738 aa12.4□□□□□ -0.42
SCAMP1-202ENST00000506858 PRR36Q9H6K5 1346 aa12.4□□□□□ -0.42
SCAMP1-202ENST00000506858 SRPK2P78362 688 aaKnown RBP12.4□□□□□ -0.42
SCAMP1-202ENST00000506858 ORAI2Q96SN7 254 aa12.4□□□□□ -0.42
SCAMP1-202ENST00000506858 DISP3Q9P2K9 1392 aa12.39□□□□□ -0.43
SCAMP1-202ENST00000506858 DDX17Q92841 729 aaKnown RBP12.39□□□□□ -0.43
SCAMP1-202ENST00000506858 SLAIN2Q9P270 581 aa12.39□□□□□ -0.43
SCAMP1-202ENST00000506858 QRICH2Q9H0J4 1663 aa12.38□□□□□ -0.43
SCAMP1-202ENST00000506858 CADPS2Q86UW7 1296 aa12.37□□□□□ -0.43
SCAMP1-202ENST00000506858 PMFBP1Q8TBY8 1022 aa12.37□□□□□ -0.43
SCAMP1-202ENST00000506858 NUDT16Q96DE0 195 aaKnown RBP12.37□□□□□ -0.43
SCAMP1-202ENST00000506858 ESCO1Q5FWF5 840 aa12.37□□□□□ -0.43
SCAMP1-202ENST00000506858 TULP4Q9NRJ4 1543 aa12.37□□□□□ -0.43
SCAMP1-202ENST00000506858 NCOA3Q9Y6Q9 1424 aa12.36□□□□□ -0.43
SCAMP1-202ENST00000506858 EVC2Q86UK5 1308 aa12.36□□□□□ -0.43
SCAMP1-202ENST00000506858 TOM1O60784 492 aa12.35□□□□□ -0.43
SCAMP1-202ENST00000506858 TMF1P82094 1093 aa12.35□□□□□ -0.43
SCAMP1-202ENST00000506858 XPCQ01831 940 aaPredicted RBP12.35□□□□□ -0.43
SCAMP1-202ENST00000506858 MST1RQ04912 1400 aa12.35□□□□□ -0.43
SCAMP1-202ENST00000506858 TMC1Q8TDI8 760 aa12.34□□□□□ -0.43
SCAMP1-202ENST00000506858 CABP1Q9NZU7 370 aa12.34□□□□□ -0.43
SCAMP1-202ENST00000506858 C1orf167Q5SNV9 1468 aa12.34□□□□□ -0.43
SCAMP1-202ENST00000506858 BRINP3Q76B58 766 aa12.33□□□□□ -0.43
SCAMP1-202ENST00000506858 SLC12A5Q9H2X9 1139 aa12.33□□□□□ -0.43
SCAMP1-202ENST00000506858 FOXO3O43524 673 aa12.33□□□□□ -0.44
SCAMP1-202ENST00000506858 RGPD8O14715 1765 aaPredicted RBP12.32□□□□□ -0.44
SCAMP1-202ENST00000506858 PHF8Q9UPP1 1060 aa12.32□□□□□ -0.44
SCAMP1-202ENST00000506858 SBNO2Q9Y2G9 1366 aa12.32□□□□□ -0.44
SCAMP1-202ENST00000506858 CDC42BPGQ6DT37 1551 aa12.32□□□□□ -0.44
SCAMP1-202ENST00000506858 CCDC61Q9Y6R9 512 aa12.31□□□□□ -0.44
SCAMP1-202ENST00000506858 ADGRB2O60241 1585 aa12.31□□□□□ -0.44
SCAMP1-202ENST00000506858 KIF7Q2M1P5 1343 aa12.31□□□□□ -0.44
SCAMP1-202ENST00000506858 DCCP43146 1447 aa12.31□□□□□ -0.44
SCAMP1-202ENST00000506858 USP32Q8NFA0 1604 aa12.31□□□□□ -0.44
SCAMP1-202ENST00000506858 FMN2Q9NZ56 1722 aa12.31□□□□□ -0.44
SCAMP1-202ENST00000506858 ATP7BP35670 1465 aa12.3□□□□□ -0.44
SCAMP1-202ENST00000506858 PLEKHG5O94827 1062 aa12.3□□□□□ -0.44
SCAMP1-202ENST00000506858 WASHC2AQ641Q2 1341 aa12.3□□□□□ -0.44
SCAMP1-202ENST00000506858 NGDNQ8NEJ9 315 aaKnown RBP12.29□□□□□ -0.44
SCAMP1-202ENST00000506858 PPIP5K1Q6PFW1 1433 aa12.29□□□□□ -0.44
SCAMP1-202ENST00000506858 ACEP12821 1306 aa12.28□□□□□ -0.44
SCAMP1-202ENST00000506858 IQSEC2Q5JU85 1478 aa12.28□□□□□ -0.44
SCAMP1-202ENST00000506858 HSPA1LP34931 641 aa12.27□□□□□ -0.44
SCAMP1-202ENST00000506858 ANKARQ7Z5J8 1434 aa12.27□□□□□ -0.44
SCAMP1-202ENST00000506858 CCDC7Q96M83 1385 aa12.27□□□□□ -0.45
SCAMP1-202ENST00000506858 PLEKHG3A1L390 1219 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms