RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 RGL3Q3MIN7 710 aa8.6□□□□□ -1.03
SSBP1-213ENST00000496622 TAF7LQ5H9L4 462 aa8.6□□□□□ -1.03
SSBP1-213ENST00000496622 CDC42BPBQ9Y5S2 1711 aa8.59□□□□□ -1.03
SSBP1-213ENST00000496622 ITSN2Q9NZM3 1697 aa8.59□□□□□ -1.03
SSBP1-213ENST00000496622 CCDC141Q6ZP82 1450 aa8.59□□□□□ -1.03
SSBP1-213ENST00000496622 WDR7Q9Y4E6 1490 aa8.59□□□□□ -1.03
SSBP1-213ENST00000496622 RAPGEF3O95398 923 aa8.58□□□□□ -1.04
SSBP1-213ENST00000496622 C14orf37Q86TY3 774 aa8.58□□□□□ -1.04
SSBP1-213ENST00000496622 PLEKHH2Q8IVE3 1493 aa8.58□□□□□ -1.04
SSBP1-213ENST00000496622 GCC2Q8IWJ2 1684 aa8.58□□□□□ -1.04
SSBP1-213ENST00000496622 SPAG9O60271 1321 aaKnown RBP8.58□□□□□ -1.04
SSBP1-213ENST00000496622 ADGRL2O95490 1459 aa8.57□□□□□ -1.04
SSBP1-213ENST00000496622 RSPH4AQ5TD94 716 aa8.57□□□□□ -1.04
SSBP1-213ENST00000496622 SCAPERQ9BY12 1400 aa8.57□□□□□ -1.04
SSBP1-213ENST00000496622 CNGB1Q14028 1251 aaPredicted RBP8.56□□□□□ -1.04
SSBP1-213ENST00000496622 DSG2Q14126 1118 aa8.56□□□□□ -1.04
SSBP1-213ENST00000496622 RYDENQ9NUL5 291 aaKnown RBP8.56□□□□□ -1.04
SSBP1-213ENST00000496622 PREX2Q70Z35 1606 aa8.56□□□□□ -1.04
SSBP1-213ENST00000496622 STRCQ7RTU9 1775 aa8.56□□□□□ -1.04
SSBP1-213ENST00000496622 UBAP1LF5GYI3 381 aa8.56□□□□□ -1.04
SSBP1-213ENST00000496622 HSPA5P11021 654 aaKnown RBP8.56□□□□□ -1.04
SSBP1-213ENST00000496622 HSPA2P54652 639 aa8.56□□□□□ -1.04
SSBP1-213ENST00000496622 UPF1Q92900 1129 aaKnown RBP eCLIP8.56□□□□□ -1.04
SSBP1-213ENST00000496622 FANCAO15360 1455 aa8.56□□□□□ -1.04
SSBP1-213ENST00000496622 BCORL1Q5H9F3 1711 aa8.56□□□□□ -1.04
SSBP1-213ENST00000496622 C11orf95C9JLR9 678 aaPredicted RBP8.55□□□□□ -1.04
SSBP1-213ENST00000496622 KIF3CO14782 793 aa8.55□□□□□ -1.04
SSBP1-213ENST00000496622 KIF3BO15066 747 aa8.55□□□□□ -1.04
SSBP1-213ENST00000496622 MAMSTRQ6ZN01 415 aa8.55□□□□□ -1.04
SSBP1-213ENST00000496622 DCAF11Q8TEB1 546 aa8.55□□□□□ -1.04
SSBP1-213ENST00000496622 LARP6Q9BRS8 491 aaKnown RBP8.55□□□□□ -1.04
SSBP1-213ENST00000496622 KIAA1107Q9UPP5 1409 aa8.54□□□□□ -1.04
SSBP1-213ENST00000496622 ARAP3Q8WWN8 1544 aa8.54□□□□□ -1.04
SSBP1-213ENST00000496622 RPRD2Q5VT52 1461 aaKnown RBP8.54□□□□□ -1.04
SSBP1-213ENST00000496622 POLR3GLQ9BT43 218 aa8.53□□□□□ -1.04
SSBP1-213ENST00000496622 LCE2DQ5TA82 110 aaPredicted RBP8.53□□□□□ -1.04
SSBP1-213ENST00000496622 CRISPLD2Q9H0B8 497 aa8.53□□□□□ -1.04
SSBP1-213ENST00000496622 SHANK2Q9UPX8 1470 aa8.53□□□□□ -1.04
SSBP1-213ENST00000496622 CD109Q6YHK3 1445 aa8.53□□□□□ -1.04
SSBP1-213ENST00000496622 HSPA1LP34931 641 aa8.52□□□□□ -1.04
SSBP1-213ENST00000496622 TMC2Q8TDI7 906 aa8.52□□□□□ -1.04
SSBP1-213ENST00000496622 MADDQ8WXG6 1647 aa8.52□□□□□ -1.05
SSBP1-213ENST00000496622 GGT6Q6P531 493 aa8.52□□□□□ -1.05
SSBP1-213ENST00000496622 RBM33Q96EV2 1170 aaKnown RBP8.52□□□□□ -1.05
SSBP1-213ENST00000496622 FAM163AQ96GL9 167 aaPredicted RBP8.52□□□□□ -1.05
SSBP1-213ENST00000496622 AAMPQ13685 434 aa8.51□□□□□ -1.05
SSBP1-213ENST00000496622 TPRNQ4KMQ1 711 aa8.51□□□□□ -1.05
SSBP1-213ENST00000496622 GPHNQ9NQX3 736 aaPredicted RBP8.51□□□□□ -1.05
SSBP1-213ENST00000496622 ABCA9Q8IUA7 1624 aa8.51□□□□□ -1.05
SSBP1-213ENST00000496622 WASHC2AQ641Q2 1341 aa8.51□□□□□ -1.05
SSBP1-213ENST00000496622 CROCC2H7BZ55 1655 aa8.51□□□□□ -1.05
SSBP1-213ENST00000496622 EIF4G2P78344 907 aaKnown RBP eCLIP8.51□□□□□ -1.05
SSBP1-213ENST00000496622 ERICH6BQ5W0A0 696 aa8.51□□□□□ -1.05
SSBP1-213ENST00000496622 KHSRPQ92945 711 aaKnown RBP eCLIP8.51□□□□□ -1.052e-7■■□□□ 12.4
SSBP1-213ENST00000496622 RGS17Q9UGC6 210 aaPredicted RBP8.51□□□□□ -1.05
SSBP1-213ENST00000496622 ARHGEF5Q12774 1597 aa8.51□□□□□ -1.05
SSBP1-213ENST00000496622 SETD1AO15047 1707 aaKnown RBP8.51□□□□□ -1.05
SSBP1-213ENST00000496622 MYO5CQ9NQX4 1742 aa8.51□□□□□ -1.05
SSBP1-213ENST00000496622 HOXB3P14651 431 aaPredicted RBP8.5□□□□□ -1.05
SSBP1-213ENST00000496622 MARVELD3Q96A59 401 aa8.5□□□□□ -1.05
SSBP1-213ENST00000496622 PREX1Q8TCU6 1659 aa8.5□□□□□ -1.05
SSBP1-213ENST00000496622 ABCC1P33527 1531 aa8.5□□□□□ -1.05
SSBP1-213ENST00000496622 LRP5O75197 1615 aa8.5□□□□□ -1.05
SSBP1-213ENST00000496622 FAM135AQ9P2D6 1515 aa8.49□□□□□ -1.05
SSBP1-213ENST00000496622 NBPF1Q3BBV0 1214 aa8.49□□□□□ -1.05
SSBP1-213ENST00000496622 PLPP6Q8IY26 295 aa8.49□□□□□ -1.05
SSBP1-213ENST00000496622 PLA2R1Q13018 1463 aa8.49□□□□□ -1.05
SSBP1-213ENST00000496622 CFAP74Q9C0B2 1584 aa8.49□□□□□ -1.05
SSBP1-213ENST00000496622 ADGBQ8N7X0 1667 aa8.49□□□□□ -1.05
SSBP1-213ENST00000496622 NEO1Q92859 1461 aa8.48□□□□□ -1.05
SSBP1-213ENST00000496622 BRD2P25440 801 aaKnown RBP8.48□□□□□ -1.05
SSBP1-213ENST00000496622 ST18O60284 1047 aa8.47□□□□□ -1.05
SSBP1-213ENST00000496622 FOXK1P85037 733 aa8.47□□□□□ -1.05
SSBP1-213ENST00000496622 PPP1R15BQ5SWA1 713 aa8.47□□□□□ -1.05
SSBP1-213ENST00000496622 DDX27Q96GQ7 796 aaKnown RBP8.47□□□□□ -1.05
SSBP1-213ENST00000496622 CARD11Q9BXL7 1154 aa8.47□□□□□ -1.05
SSBP1-213ENST00000496622 CCDC144AA2RUR9 1427 aa8.47□□□□□ -1.05
SSBP1-213ENST00000496622 DEKP35659 375 aaKnown RBP8.46□□□□□ -1.05
SSBP1-213ENST00000496622 RIMS1Q86UR5 1692 aaKnown RBP8.46□□□□□ -1.06
SSBP1-213ENST00000496622 RBM10P98175 930 aaKnown RBP8.46□□□□□ -1.06
SSBP1-213ENST00000496622 ST20-MTHFSA0A0A6YYL1 179 aa8.45□□□□□ -1.06
SSBP1-213ENST00000496622 SENP3-EIF4A1A0A087X0R7 540 aa8.45□□□□□ -1.06
SSBP1-213ENST00000496622 ZFYVE16Q7Z3T8 1539 aa8.44□□□□□ -1.06
SSBP1-213ENST00000496622 DUOX2Q9NRD8 1548 aa8.44□□□□□ -1.06
SSBP1-213ENST00000496622 NUTM2DQ5VT03 806 aaPredicted RBP8.44□□□□□ -1.06
SSBP1-213ENST00000496622 EMILIN3Q9NT22 766 aa8.44□□□□□ -1.06
SSBP1-213ENST00000496622 KIF7Q2M1P5 1343 aa8.44□□□□□ -1.06
SSBP1-213ENST00000496622 DHX29Q7Z478 1369 aaKnown RBP8.44□□□□□ -1.06
SSBP1-213ENST00000496622 PDE4AP27815 886 aa8.43□□□□□ -1.06
SSBP1-213ENST00000496622 CCDC184Q52MB2 194 aa8.43□□□□□ -1.06
SSBP1-213ENST00000496622 ARSIQ5FYB1 569 aa8.43□□□□□ -1.06
SSBP1-213ENST00000496622 ERBINQ96RT1 1412 aa8.43□□□□□ -1.06
SSBP1-213ENST00000496622 ANP32CO43423 234 aa8.43□□□□□ -1.06
SSBP1-213ENST00000496622 ZMYND15Q9H091 742 aa8.43□□□□□ -1.06
SSBP1-213ENST00000496622 USP47Q96K76 1375 aa8.43□□□□□ -1.06
SSBP1-213ENST00000496622 ATP7AQ04656 1500 aa8.43□□□□□ -1.06
SSBP1-213ENST00000496622 MLECQ14165 292 aa8.42□□□□□ -1.06
SSBP1-213ENST00000496622 RTEL1-TNFRSF6BF6WH68 1400 aa8.42□□□□□ -1.06
SSBP1-213ENST00000496622 WASHC2CQ9Y4E1 1318 aa8.42□□□□□ -1.06
SSBP1-213ENST00000496622 MAST1Q9Y2H9 1570 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms