RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 TPM2P07951 284 aa16.02■□□□□ 0.15
PTPRF-215ENST00000496447 CFAP70Q5T0N1 1121 aa16.02■□□□□ 0.15
PTPRF-215ENST00000496447 LRRC9Q6ZRR7 1453 aa16.02■□□□□ 0.15
PTPRF-215ENST00000496447 MRC2Q9UBG0 1479 aa16.02■□□□□ 0.15
PTPRF-215ENST00000496447 STRN4Q9NRL3 753 aa16.01■□□□□ 0.15
PTPRF-215ENST00000496447 DDX11L8A8MPP1 907 aa16.01■□□□□ 0.15
PTPRF-215ENST00000496447 TSR1Q2NL82 804 aaKnown RBP16.01■□□□□ 0.15
PTPRF-215ENST00000496447 WASHC2AQ641Q2 1341 aa16.01■□□□□ 0.15
PTPRF-215ENST00000496447 ERC2O15083 957 aa16.01■□□□□ 0.15
PTPRF-215ENST00000496447 PLEKHO1Q53GL0 409 aaPredicted RBP16■□□□□ 0.15
PTPRF-215ENST00000496447 KIF7Q2M1P5 1343 aa15.99■□□□□ 0.15
PTPRF-215ENST00000496447 SAMD1Q6SPF0 538 aaPredicted RBP15.99■□□□□ 0.15
PTPRF-215ENST00000496447 GAS2L2Q8NHY3 880 aa15.99■□□□□ 0.15
PTPRF-215ENST00000496447 PRAM1Q96QH2 718 aa15.99■□□□□ 0.15
PTPRF-215ENST00000496447 RBM42Q9BTD8 480 aaKnown RBP15.99■□□□□ 0.15
PTPRF-215ENST00000496447 DCAF8L1A6NGE4 600 aa15.99■□□□□ 0.15
PTPRF-215ENST00000496447 UBTFL1P0CB47 393 aaPredicted RBP15.99■□□□□ 0.15
PTPRF-215ENST00000496447 CCDC27Q2M243 656 aa15.99■□□□□ 0.15
PTPRF-215ENST00000496447 SMG6Q86US8 1419 aaKnown RBP15.98■□□□□ 0.15
PTPRF-215ENST00000496447 GOLGA6L19H0YKK7 550 aa15.98■□□□□ 0.15
PTPRF-215ENST00000496447 CCDC7Q96M83 1385 aa15.98■□□□□ 0.15
PTPRF-215ENST00000496447 CCDC47Q96A33 483 aaKnown RBP15.98■□□□□ 0.15
PTPRF-215ENST00000496447 IFT140Q96RY7 1462 aa15.98■□□□□ 0.15
PTPRF-215ENST00000496447 BECN2A8MW95 431 aa15.98■□□□□ 0.15
PTPRF-215ENST00000496447 PDE4AP27815 886 aa15.98■□□□□ 0.15
PTPRF-215ENST00000496447 MAP7D2Q96T17 732 aa15.98■□□□□ 0.15
PTPRF-215ENST00000496447 WASHC4Q2M389 1173 aa15.97■□□□□ 0.15
PTPRF-215ENST00000496447 FYB1O15117 783 aa15.97■□□□□ 0.15
PTPRF-215ENST00000496447 MTHFSP49914 203 aa15.97■□□□□ 0.15
PTPRF-215ENST00000496447 FAM177BA6PVY3 158 aa15.97■□□□□ 0.15
PTPRF-215ENST00000496447 KIF6Q6ZMV9 814 aa15.97■□□□□ 0.15
PTPRF-215ENST00000496447 DDX49Q9Y6V7 483 aaKnown RBP15.96■□□□□ 0.15
PTPRF-215ENST00000496447 TPM1P09493 284 aa15.96■□□□□ 0.15
PTPRF-215ENST00000496447 KIF21BO75037 1637 aa15.96■□□□□ 0.15
PTPRF-215ENST00000496447 NUTM2BA6NNL0 878 aaPredicted RBP15.96■□□□□ 0.15
PTPRF-215ENST00000496447 NUTM2EB1AL46 878 aaPredicted RBP15.96■□□□□ 0.15
PTPRF-215ENST00000496447 NUTM2AQ8IVF1 878 aaPredicted RBP15.96■□□□□ 0.15
PTPRF-215ENST00000496447 CCDC43Q96MW1 224 aaKnown RBP15.96■□□□□ 0.15
PTPRF-215ENST00000496447 TATP17735 454 aaPredicted RBP15.96■□□□□ 0.14
PTPRF-215ENST00000496447 SCAPERQ9BY12 1400 aa15.95■□□□□ 0.14
PTPRF-215ENST00000496447 WWC1Q8IX03 1113 aa15.95■□□□□ 0.14
PTPRF-215ENST00000496447 CCDC30Q5VVM6 783 aa15.95■□□□□ 0.14
PTPRF-215ENST00000496447 SF3B2Q13435 895 aaKnown RBP15.95■□□□□ 0.14
PTPRF-215ENST00000496447 MTERF4Q7Z6M4 381 aaKnown RBP15.95■□□□□ 0.14
PTPRF-215ENST00000496447 INTS3Q68E01 1043 aaKnown RBP15.94■□□□□ 0.14
PTPRF-215ENST00000496447 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.94■□□□□ 0.14
PTPRF-215ENST00000496447 RALYLQ86SE5 291 aaKnown RBP15.94■□□□□ 0.14
PTPRF-215ENST00000496447 GOLGA6L1Q8N7Z2 621 aa15.94■□□□□ 0.14
PTPRF-215ENST00000496447 NESP48681 1621 aa15.94■□□□□ 0.14
PTPRF-215ENST00000496447 PLEKHH2Q8IVE3 1493 aa15.94■□□□□ 0.14
PTPRF-215ENST00000496447 ANKLE2Q86XL3 938 aa15.94■□□□□ 0.14
PTPRF-215ENST00000496447 FAM43AQ8N2R8 423 aa15.94■□□□□ 0.14
PTPRF-215ENST00000496447 SKOR2Q2VWA4 1001 aaPredicted RBP15.93■□□□□ 0.14
PTPRF-215ENST00000496447 LNPKQ9C0E8 428 aa15.93■□□□□ 0.14
PTPRF-215ENST00000496447 TOM1L2Q6ZVM7 507 aa15.92■□□□□ 0.14
PTPRF-215ENST00000496447 PCMTD1Q96MG8 357 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-215ENST00000496447 PRKAR2BP31323 418 aa15.92■□□□□ 0.14
PTPRF-215ENST00000496447 SAFBQ15424 915 aaKnown RBP eCLIP15.91■□□□□ 0.14
PTPRF-215ENST00000496447 POGZQ7Z3K3 1410 aa15.91■□□□□ 0.14
PTPRF-215ENST00000496447 SLC4A3P48751 1232 aa15.91■□□□□ 0.14
PTPRF-215ENST00000496447 CDK19Q9BWU1 502 aa15.91■□□□□ 0.14
PTPRF-215ENST00000496447 SLC52A1Q9NWF4 448 aa15.91■□□□□ 0.14
PTPRF-215ENST00000496447 HOOK1Q9UJC3 728 aaKnown RBP15.91■□□□□ 0.14
PTPRF-215ENST00000496447 C9orf84Q5VXU9 1444 aa15.91■□□□□ 0.14
PTPRF-215ENST00000496447 RAPGEF3O95398 923 aa15.91■□□□□ 0.14
PTPRF-215ENST00000496447 ZNF771Q7L3S4 317 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-215ENST00000496447 ANKRD20A12PQ8NF67 263 aa15.9■□□□□ 0.14
PTPRF-215ENST00000496447 TBC1D2BQ9UPU7 963 aa15.9■□□□□ 0.14
PTPRF-215ENST00000496447 BICD2Q8TD16 824 aa15.9■□□□□ 0.14
PTPRF-215ENST00000496447 ZNF692Q9BU19 519 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-215ENST00000496447 PPP1R1BQ9UD71 204 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-215ENST00000496447 TCP11L2Q8N4U5 519 aa15.9■□□□□ 0.14
PTPRF-215ENST00000496447 IL27Q8NEV9 243 aa15.9■□□□□ 0.14
PTPRF-215ENST00000496447 HFM1A2PYH4 1435 aa15.9■□□□□ 0.14
PTPRF-215ENST00000496447 CNTLNQ9NXG0 1405 aa15.9■□□□□ 0.14
PTPRF-215ENST00000496447 VPS37CA5D8V6 355 aaPredicted RBP15.89■□□□□ 0.14
PTPRF-215ENST00000496447 GNAI3P08754 354 aa15.89■□□□□ 0.14
PTPRF-215ENST00000496447 SMC3Q9UQE7 1217 aa15.89■□□□□ 0.14
PTPRF-215ENST00000496447 CFTRP13569 1480 aa15.89■□□□□ 0.13
PTPRF-215ENST00000496447 PANK1Q8TE04 598 aa15.89■□□□□ 0.13
PTPRF-215ENST00000496447 CABP4P57796 275 aa15.89■□□□□ 0.13
PTPRF-215ENST00000496447 DDX54Q8TDD1 881 aaKnown RBP15.89■□□□□ 0.13
PTPRF-215ENST00000496447 ADAMTS8Q9UP79 889 aa15.89■□□□□ 0.13
PTPRF-215ENST00000496447 SNAPC4Q5SXM2 1469 aa15.89■□□□□ 0.13
PTPRF-215ENST00000496447 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-215ENST00000496447 FOSBP53539 338 aa15.89■□□□□ 0.13
PTPRF-215ENST00000496447 UBE2Q2Q8WVN8 375 aa15.88■□□□□ 0.13
PTPRF-215ENST00000496447 FAM13BQ9NYF5 915 aa15.88■□□□□ 0.13
PTPRF-215ENST00000496447 NINLQ9Y2I6 1382 aa15.88■□□□□ 0.13
PTPRF-215ENST00000496447 SLC26A8Q96RN1 970 aa15.88■□□□□ 0.13
PTPRF-215ENST00000496447 FSD1Q9BTV5 496 aa15.88■□□□□ 0.13
PTPRF-215ENST00000496447 CLASRPQ8N2M8 674 aaKnown RBP15.88■□□□□ 0.13
PTPRF-215ENST00000496447 CABP1Q9NZU7 370 aa15.88■□□□□ 0.13
PTPRF-215ENST00000496447 MTMR7Q9Y216 660 aa15.88■□□□□ 0.13
PTPRF-215ENST00000496447 PIP4K2BP78356 416 aa15.88■□□□□ 0.13
PTPRF-215ENST00000496447 IKQ13123 557 aaPredicted RBP15.88■□□□□ 0.13
PTPRF-215ENST00000496447 CNKSR2Q8WXI2 1034 aa15.88■□□□□ 0.13
PTPRF-215ENST00000496447 SURF6O75683 361 aaKnown RBP15.87■□□□□ 0.13
PTPRF-215ENST00000496447 AAMPQ13685 434 aa15.87■□□□□ 0.13
PTPRF-215ENST00000496447 CNTROBQ8N137 903 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms