RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 PIK3R4Q99570 1358 aa15.83■□□□□ 0.12
COL6A3-214ENST00000493608 SETBP1Q9Y6X0 1596 aa15.83■□□□□ 0.12
COL6A3-214ENST00000493608 VGFO15240 615 aaPredicted RBP15.82■□□□□ 0.12
COL6A3-214ENST00000493608 SLAIN2Q9P270 581 aa15.82■□□□□ 0.12
COL6A3-214ENST00000493608 RAB3GAP2Q9H2M9 1393 aa15.82■□□□□ 0.12
COL6A3-214ENST00000493608 FAM135BQ49AJ0 1406 aa15.81■□□□□ 0.12
COL6A3-214ENST00000493608 ROBO1Q9Y6N7 1651 aa15.8■□□□□ 0.12
COL6A3-214ENST00000493608 CCDC144AA2RUR9 1427 aa15.8■□□□□ 0.12
COL6A3-214ENST00000493608 RPGRIP1LQ68CZ1 1315 aa15.8■□□□□ 0.12
COL6A3-214ENST00000493608 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.8■□□□□ 0.12
COL6A3-214ENST00000493608 C19orf44Q9H6X5 657 aa15.79■□□□□ 0.12
COL6A3-214ENST00000493608 PPLO60437 1756 aa15.79■□□□□ 0.12
COL6A3-214ENST00000493608 CD44P16070 742 aaKnown RBP15.78■□□□□ 0.12
COL6A3-214ENST00000493608 ATF3P18847 181 aa15.78■□□□□ 0.12
COL6A3-214ENST00000493608 XRN1Q8IZH2 1706 aaKnown RBP15.77■□□□□ 0.12
COL6A3-214ENST00000493608 MED1Q15648 1581 aaPredicted RBP15.77■□□□□ 0.11
COL6A3-214ENST00000493608 NCOA3Q9Y6Q9 1424 aa15.77■□□□□ 0.11
COL6A3-214ENST00000493608 ADGRF5Q8IZF2 1346 aa15.76■□□□□ 0.11
COL6A3-214ENST00000493608 MNX1P50219 401 aaPredicted RBP15.75■□□□□ 0.11
COL6A3-214ENST00000493608 CADPS2Q86UW7 1296 aa15.75■□□□□ 0.11
COL6A3-214ENST00000493608 SETD1AO15047 1707 aaKnown RBP15.74■□□□□ 0.11
COL6A3-214ENST00000493608 ACIN1Q9UKV3 1341 aaKnown RBP15.74■□□□□ 0.11
COL6A3-214ENST00000493608 SPATA31E1Q6ZUB1 1445 aa15.74■□□□□ 0.11
COL6A3-214ENST00000493608 GABBR2O75899 941 aa15.73■□□□□ 0.11
COL6A3-214ENST00000493608 PHLPP1O60346 1717 aa15.72■□□□□ 0.11
COL6A3-214ENST00000493608 TMEM132EQ6IEE7 984 aa15.7■□□□□ 0.1
COL6A3-214ENST00000493608 STK26Q9P289 416 aa15.7■□□□□ 0.1
COL6A3-214ENST00000493608 IFT172Q9UG01 1749 aa15.7■□□□□ 0.1
COL6A3-214ENST00000493608 ROBO2Q9HCK4 1378 aa15.7■□□□□ 0.1
COL6A3-214ENST00000493608 ANKRD30BQ9BXX2 1392 aa15.69■□□□□ 0.1
COL6A3-214ENST00000493608 FKBP8Q14318 412 aa15.68■□□□□ 0.1
COL6A3-214ENST00000493608 BRINP3Q76B58 766 aa15.68■□□□□ 0.1
COL6A3-214ENST00000493608 NALCNQ8IZF0 1738 aa15.68■□□□□ 0.1
COL6A3-214ENST00000493608 ADGRL3Q9HAR2 1447 aa15.67■□□□□ 0.1
COL6A3-214ENST00000493608 HRCP23327 699 aa15.66■□□□□ 0.1
COL6A3-214ENST00000493608 DDX17Q92841 729 aaKnown RBP15.66■□□□□ 0.1
COL6A3-214ENST00000493608 MST1RQ04912 1400 aa15.66■□□□□ 0.1
COL6A3-214ENST00000493608 WAPLQ7Z5K2 1190 aa15.65■□□□□ 0.1
COL6A3-214ENST00000493608 KDM2AQ9Y2K7 1162 aa15.65■□□□□ 0.1
COL6A3-214ENST00000493608 DCCP43146 1447 aa15.65■□□□□ 0.1
COL6A3-214ENST00000493608 SOCS7O14512 581 aa15.64■□□□□ 0.09
COL6A3-214ENST00000493608 PTCH1Q13635 1447 aa15.64■□□□□ 0.09
COL6A3-214ENST00000493608 CFAP70Q5T0N1 1121 aa15.64■□□□□ 0.09
COL6A3-214ENST00000493608 COL16A1Q07092 1604 aaPredicted RBP15.64■□□□□ 0.09
COL6A3-214ENST00000493608 PIK3C2GO75747 1445 aa15.63■□□□□ 0.09
COL6A3-214ENST00000493608 RGS17Q9UGC6 210 aaPredicted RBP15.63■□□□□ 0.09
COL6A3-214ENST00000493608 JCADQ9P266 1359 aa15.62■□□□□ 0.09
COL6A3-214ENST00000493608 ASXL1Q8IXJ9 1541 aa15.62■□□□□ 0.09
COL6A3-214ENST00000493608 DCAF11Q8TEB1 546 aa15.61■□□□□ 0.09
COL6A3-214ENST00000493608 ORAI2Q96SN7 254 aa15.61■□□□□ 0.09
COL6A3-214ENST00000493608 C14orf93Q9H972 538 aaKnown RBP15.61■□□□□ 0.09
COL6A3-214ENST00000493608 LRPPRCP42704 1394 aaKnown RBP15.61■□□□□ 0.09
COL6A3-214ENST00000493608 AHDC1Q5TGY3 1603 aaPredicted RBP15.61■□□□□ 0.09
COL6A3-214ENST00000493608 C1orf167Q5SNV9 1468 aa15.6■□□□□ 0.09
COL6A3-214ENST00000493608 PLEKHH1Q9ULM0 1364 aa15.6■□□□□ 0.09
COL6A3-214ENST00000493608 NUTM2FA1L443 756 aa15.59■□□□□ 0.09
COL6A3-214ENST00000493608 ZNF579Q8NAF0 562 aaKnown RBP15.59■□□□□ 0.09
COL6A3-214ENST00000493608 PRAG1Q86YV5 1406 aa15.59■□□□□ 0.09
COL6A3-214ENST00000493608 YTHDC2Q9H6S0 1430 aaKnown RBP15.59■□□□□ 0.09
COL6A3-214ENST00000493608 ZRANB1Q9UGI0 708 aa15.58■□□□□ 0.08
COL6A3-214ENST00000493608 ABCC11Q96J66 1382 aa15.58■□□□□ 0.08
COL6A3-214ENST00000493608 NRXN1Q9ULB1 1477 aa15.58■□□□□ 0.08
COL6A3-214ENST00000493608 NUTM2BA6NNL0 878 aaPredicted RBP15.57■□□□□ 0.08
COL6A3-214ENST00000493608 NUTM2EB1AL46 878 aaPredicted RBP15.57■□□□□ 0.08
COL6A3-214ENST00000493608 SAFB2Q14151 953 aaKnown RBP eCLIP15.57■□□□□ 0.08
COL6A3-214ENST00000493608 NUTM2AQ8IVF1 878 aaPredicted RBP15.57■□□□□ 0.08
COL6A3-214ENST00000493608 MYOM2P54296 1465 aa15.57■□□□□ 0.08
COL6A3-214ENST00000493608 NHSL1Q5SYE7 1610 aa15.57■□□□□ 0.08
COL6A3-214ENST00000493608 POTEAQ6S8J7 498 aa15.56■□□□□ 0.08
COL6A3-214ENST00000493608 DHX57Q6P158 1386 aaKnown RBP15.56■□□□□ 0.08
COL6A3-214ENST00000493608 TECPR2O15040 1411 aa15.56■□□□□ 0.08
COL6A3-214ENST00000493608 KNDC1Q76NI1 1749 aa15.55■□□□□ 0.08
COL6A3-214ENST00000493608 ESCO1Q5FWF5 840 aa15.55■□□□□ 0.08
COL6A3-214ENST00000493608 MEX3CQ5U5Q3 659 aaKnown RBP15.55■□□□□ 0.08
COL6A3-214ENST00000493608 LRRC59Q96AG4 307 aaKnown RBP15.55■□□□□ 0.08
COL6A3-214ENST00000493608 SHPRHQ149N8 1683 aa15.54■□□□□ 0.08
COL6A3-214ENST00000493608 LRP6O75581 1613 aa15.54■□□□□ 0.08
COL6A3-214ENST00000493608 SPATA31A6Q5VVP1 1343 aa15.54■□□□□ 0.08
COL6A3-214ENST00000493608 CLCN6P51797 869 aa15.54■□□□□ 0.08
COL6A3-214ENST00000493608 PRAM1Q96QH2 718 aa15.53■□□□□ 0.08
COL6A3-214ENST00000493608 TRAK1Q9UPV9 953 aa15.53■□□□□ 0.08
COL6A3-214ENST00000493608 LAMC1P11047 1609 aa15.52■□□□□ 0.08
COL6A3-214ENST00000493608 CDC42BPGQ6DT37 1551 aa15.51■□□□□ 0.07
COL6A3-214ENST00000493608 FOXO3O43524 673 aa15.51■□□□□ 0.07
COL6A3-214ENST00000493608 XPCQ01831 940 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-214ENST00000493608 SIRT1Q96EB6 747 aa15.51■□□□□ 0.07
COL6A3-214ENST00000493608 POGKQ9P215 609 aa15.51■□□□□ 0.07
COL6A3-214ENST00000493608 RGPD8O14715 1765 aaPredicted RBP15.49■□□□□ 0.07
COL6A3-214ENST00000493608 PNPLA6Q8IY17 1366 aa15.49■□□□□ 0.07
COL6A3-214ENST00000493608 SOS2Q07890 1332 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-214ENST00000493608 HIRIP3Q9BW71 556 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-214ENST00000493608 ADGRB1O14514 1584 aa15.48■□□□□ 0.07
COL6A3-214ENST00000493608 FMN2Q9NZ56 1722 aa15.48■□□□□ 0.07
COL6A3-214ENST00000493608 SIN3AQ96ST3 1273 aa15.47■□□□□ 0.07
COL6A3-214ENST00000493608 MINK1Q8N4C8 1332 aaPredicted RBP15.46■□□□□ 0.07
COL6A3-214ENST00000493608 ADAMTS2O95450 1211 aa15.46■□□□□ 0.07
COL6A3-214ENST00000493608 POTEIP0CG38 1075 aa15.46■□□□□ 0.07
COL6A3-214ENST00000493608 MIER1Q8N108 512 aa15.46■□□□□ 0.07
COL6A3-214ENST00000493608 STAC3Q96MF2 364 aa15.46■□□□□ 0.07
COL6A3-214ENST00000493608 C8orf37Q96NL8 207 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms