RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 USP32Q8NFA0 1604 aa8.74□□□□□ -1.01
VPS13B-205ENST00000493587 KIF20AO95235 890 aa8.74□□□□□ -1.01
VPS13B-205ENST00000493587 MRE11P49959 708 aa8.74□□□□□ -1.01
VPS13B-205ENST00000493587 TMC1Q8TDI8 760 aa8.74□□□□□ -1.01
VPS13B-205ENST00000493587 CNTLNQ9NXG0 1405 aa8.73□□□□□ -1.01
VPS13B-205ENST00000493587 CBX1P83916 185 aa8.73□□□□□ -1.01
VPS13B-205ENST00000493587 DIP2BQ9P265 1576 aa8.73□□□□□ -1.01
VPS13B-205ENST00000493587 RIMBP3CA6NJZ7 1639 aa8.73□□□□□ -1.01
VPS13B-205ENST00000493587 RIMBP3BA6NNM3 1639 aa8.73□□□□□ -1.01
VPS13B-205ENST00000493587 RIMBP3Q9UFD9 1639 aa8.73□□□□□ -1.01
VPS13B-205ENST00000493587 RRP7BPQ9NSQ0 103 aa8.73□□□□□ -1.01
VPS13B-205ENST00000493587 ZBED9Q6R2W3 1325 aa8.73□□□□□ -1.01
VPS13B-205ENST00000493587 ZNF771Q7L3S4 317 aaPredicted RBP8.73□□□□□ -1.01
VPS13B-205ENST00000493587 CLTCQ00610 1675 aaKnown RBP8.72□□□□□ -1.01
VPS13B-205ENST00000493587 ARHGEF28Q8N1W1 1705 aaKnown RBP8.72□□□□□ -1.01
VPS13B-205ENST00000493587 SKAP1Q86WV1 359 aa8.72□□□□□ -1.01
VPS13B-205ENST00000493587 LETM1O95202 739 aaPredicted RBP8.72□□□□□ -1.01
VPS13B-205ENST00000493587 EXOC6Q8TAG9 804 aa8.72□□□□□ -1.01
VPS13B-205ENST00000493587 CHIC2Q9UKJ5 165 aa8.72□□□□□ -1.01
VPS13B-205ENST00000493587 HDAC5Q9UQL6 1122 aa8.72□□□□□ -1.01
VPS13B-205ENST00000493587 ERBB4Q15303 1308 aa8.72□□□□□ -1.01
VPS13B-205ENST00000493587 KIF15Q9NS87 1388 aa8.72□□□□□ -1.01
VPS13B-205ENST00000493587 MYOM2P54296 1465 aa8.72□□□□□ -1.01
VPS13B-205ENST00000493587 MLH3Q9UHC1 1453 aa8.72□□□□□ -1.01
VPS13B-205ENST00000493587 PLEKHD1A6NEE1 506 aa8.71□□□□□ -1.01
VPS13B-205ENST00000493587 RIPK4P57078 832 aa8.71□□□□□ -1.01
VPS13B-205ENST00000493587 RGS22Q8NE09 1264 aa8.71□□□□□ -1.01
VPS13B-205ENST00000493587 KDM5AP29375 1690 aaKnown RBP8.71□□□□□ -1.01
VPS13B-205ENST00000493587 ZBTB7CA1YPR0 619 aa8.71□□□□□ -1.02
VPS13B-205ENST00000493587 BECN1Q14457 450 aa8.71□□□□□ -1.02
VPS13B-205ENST00000493587 TAF3Q5VWG9 929 aa8.71□□□□□ -1.02
VPS13B-205ENST00000493587 CFDP1Q9UEE9 299 aaPredicted RBP8.71□□□□□ -1.02
VPS13B-205ENST00000493587 PREX1Q8TCU6 1659 aa8.71□□□□□ -1.02
VPS13B-205ENST00000493587 NUDCQ9Y266 331 aa8.71□□□□□ -1.02
VPS13B-205ENST00000493587 IGSF3O75054 1194 aa8.7□□□□□ -1.02
VPS13B-205ENST00000493587 GTPBP4Q9BZE4 634 aaKnown RBP8.7□□□□□ -1.02
VPS13B-205ENST00000493587 ADGRB1O14514 1584 aa8.7□□□□□ -1.02
VPS13B-205ENST00000493587 KCNJ4P48050 445 aa8.7□□□□□ -1.02
VPS13B-205ENST00000493587 FAM193AP78312 1265 aa8.7□□□□□ -1.02
VPS13B-205ENST00000493587 COL17A1Q9UMD9 1497 aaPredicted RBP8.69□□□□□ -1.02
VPS13B-205ENST00000493587 PTMSP20962 102 aa8.69□□□□□ -1.02
VPS13B-205ENST00000493587 GRPEL1Q9HAV7 217 aa8.69□□□□□ -1.02
VPS13B-205ENST00000493587 SHPRHQ149N8 1683 aa8.69□□□□□ -1.02
VPS13B-205ENST00000493587 ANKRD26Q9UPS8 1709 aa8.69□□□□□ -1.02
VPS13B-205ENST00000493587 CCDC184Q52MB2 194 aa8.69□□□□□ -1.02
VPS13B-205ENST00000493587 SPRYD3Q8NCJ5 442 aa8.69□□□□□ -1.02
VPS13B-205ENST00000493587 CCDC7Q96M83 1385 aa8.69□□□□□ -1.02
VPS13B-205ENST00000493587 ZBTB9Q96C00 473 aa8.68□□□□□ -1.02
VPS13B-205ENST00000493587 CCDC94Q9BW85 323 aaPredicted RBP8.68□□□□□ -1.02
VPS13B-205ENST00000493587 SCAPERQ9BY12 1400 aa8.68□□□□□ -1.02
VPS13B-205ENST00000493587 HSP90B1P14625 803 aaKnown RBP8.68□□□□□ -1.02
VPS13B-205ENST00000493587 ZSCAN20P17040 1043 aaPredicted RBP8.68□□□□□ -1.02
VPS13B-205ENST00000493587 ASXL2Q76L83 1435 aa8.68□□□□□ -1.02
VPS13B-205ENST00000493587 TMEM131LA2VDJ0 1609 aa8.67□□□□□ -1.02
VPS13B-205ENST00000493587 OFD1O75665 1012 aa8.67□□□□□ -1.02
VPS13B-205ENST00000493587 MYCNP04198 464 aaPredicted RBP8.67□□□□□ -1.02
VPS13B-205ENST00000493587 POGZQ7Z3K3 1410 aa8.67□□□□□ -1.02
VPS13B-205ENST00000493587 FANCAO15360 1455 aa8.67□□□□□ -1.02
VPS13B-205ENST00000493587 TNNT3P45378 269 aaPredicted RBP8.67□□□□□ -1.02
VPS13B-205ENST00000493587 L3MBTL2Q969R5 705 aa8.67□□□□□ -1.02
VPS13B-205ENST00000493587 CLGNO14967 610 aa8.67□□□□□ -1.02
VPS13B-205ENST00000493587 CHMP4CQ96CF2 233 aa8.67□□□□□ -1.02
VPS13B-205ENST00000493587 KCNG1Q9UIX4 513 aa8.67□□□□□ -1.02
VPS13B-205ENST00000493587 ABCC3O15438 1527 aa8.66□□□□□ -1.02
VPS13B-205ENST00000493587 RNF216Q9NWF9 866 aaPredicted RBP8.66□□□□□ -1.02
VPS13B-205ENST00000493587 CHRM1P11229 460 aaPredicted RBP8.66□□□□□ -1.02
VPS13B-205ENST00000493587 NEXMIFQ5QGS0 1516 aa8.66□□□□□ -1.02
VPS13B-205ENST00000493587 QRICH2Q9H0J4 1663 aa8.66□□□□□ -1.02
VPS13B-205ENST00000493587 NRXN3Q9Y4C0 1643 aa8.65□□□□□ -1.02
VPS13B-205ENST00000493587 NEO1Q92859 1461 aa8.65□□□□□ -1.02
VPS13B-205ENST00000493587 TONSLQ96HA7 1378 aa8.65□□□□□ -1.02
VPS13B-205ENST00000493587 HNRNPMP52272 730 aaKnown RBP eCLIP8.65□□□□□ -1.02
VPS13B-205ENST00000493587 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.65□□□□□ -1.02
VPS13B-205ENST00000493587 ZSCAN30Q86W11 494 aa8.65□□□□□ -1.02
VPS13B-205ENST00000493587 DNAJC2Q99543 621 aaKnown RBP8.65□□□□□ -1.02
VPS13B-205ENST00000493587 KNDC1Q76NI1 1749 aa8.64□□□□□ -1.03
VPS13B-205ENST00000493587 ASXL1Q8IXJ9 1541 aa8.64□□□□□ -1.03
VPS13B-205ENST00000493587 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.64□□□□□ -1.03
VPS13B-205ENST00000493587 DYNC1I1O14576 645 aa8.64□□□□□ -1.03
VPS13B-205ENST00000493587 TRAK2O60296 914 aa8.64□□□□□ -1.03
VPS13B-205ENST00000493587 UGGT1Q9NYU2 1555 aa8.64□□□□□ -1.03
VPS13B-205ENST00000493587 FAM161AQ3B820 660 aa8.64□□□□□ -1.03
VPS13B-205ENST00000493587 OSCARQ8IYS5 282 aa8.64□□□□□ -1.03
VPS13B-205ENST00000493587 PTMAP06454 111 aaKnown RBP8.63□□□□□ -1.03
VPS13B-205ENST00000493587 CC2D1BQ5T0F9 858 aaKnown RBP8.63□□□□□ -1.03
VPS13B-205ENST00000493587 XPCQ01831 940 aaPredicted RBP8.63□□□□□ -1.03
VPS13B-205ENST00000493587 CNKSR2Q8WXI2 1034 aa8.63□□□□□ -1.03
VPS13B-205ENST00000493587 TRIM6-TRIM34B2RNG4 842 aa8.63□□□□□ -1.03
VPS13B-205ENST00000493587 SOX12O15370 315 aa8.63□□□□□ -1.03
VPS13B-205ENST00000493587 TRIM34Q9BYJ4 488 aa8.63□□□□□ -1.03
VPS13B-205ENST00000493587 FSD2A1L4K1 749 aa8.62□□□□□ -1.03
VPS13B-205ENST00000493587 SPDYE4A6NLX3 237 aa8.62□□□□□ -1.03
VPS13B-205ENST00000493587 ZNF777Q9ULD5 760 aaPredicted RBP8.62□□□□□ -1.03
VPS13B-205ENST00000493587 IRX5P78411 483 aaPredicted RBP8.61□□□□□ -1.03
VPS13B-205ENST00000493587 NGEFQ8N5V2 710 aa8.61□□□□□ -1.03
VPS13B-205ENST00000493587 NOS1P29475 1434 aa8.61□□□□□ -1.03
VPS13B-205ENST00000493587 TERF1P54274 439 aa8.61□□□□□ -1.03
VPS13B-205ENST00000493587 ADGRL1O94910 1474 aa8.61□□□□□ -1.03
VPS13B-205ENST00000493587 AGLP35573 1532 aa8.61□□□□□ -1.03
VPS13B-205ENST00000493587 INSRP06213 1382 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms