RNA–Protein interactions for RNA: ENST00000493303.1

CSMD3-207, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 5,703 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-207ENST00000493303 YY1P25490 414 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 HOOK2Q96ED9 719 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.53□□□□□ -1.68
CSMD3-207ENST00000493303 TEX14Q8IWB6 1497 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 PREX2Q70Z35 1606 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 MLECQ14165 292 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 NR2E3Q9Y5X4 410 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 PTPRMP28827 1452 aa4.52□□□□□ -1.69
CSMD3-207ENST00000493303 PRXQ9BXM0 1461 aa4.52□□□□□ -1.69
CSMD3-207ENST00000493303 PPP1R12AO14974 1030 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-207ENST00000493303 HS6ST3Q8IZP7 471 aa4.52□□□□□ -1.69
CSMD3-207ENST00000493303 LBHD1Q9BQE6 289 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-207ENST00000493303 ZNF219Q9P2Y4 722 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-207ENST00000493303 TNS4Q8IZW8 715 aa4.52□□□□□ -1.69
CSMD3-207ENST00000493303 TRIM52Q96A61 297 aa4.52□□□□□ -1.69
CSMD3-207ENST00000493303 COL22A1Q8NFW1 1626 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-207ENST00000493303 PTPN23Q9H3S7 1636 aa4.52□□□□□ -1.69
CSMD3-207ENST00000493303 CPLX2Q6PUV4 134 aaKnown RBP4.52□□□□□ -1.69
CSMD3-207ENST00000493303 ECE1P42892 770 aa4.52□□□□□ -1.69
CSMD3-207ENST00000493303 CCDC125Q86Z20 511 aa4.52□□□□□ -1.69
CSMD3-207ENST00000493303 TMOD2Q9NZR1 351 aa4.52□□□□□ -1.69
CSMD3-207ENST00000493303 MARF1Q9Y4F3 1742 aaKnown RBP4.52□□□□□ -1.69
CSMD3-207ENST00000493303 SDHBP21912 280 aa4.51□□□□□ -1.69
CSMD3-207ENST00000493303 FAM200AQ8TCP9 573 aa4.51□□□□□ -1.69
CSMD3-207ENST00000493303 ATP5J2-PTCD1G3V325 749 aa4.51□□□□□ -1.69
CSMD3-207ENST00000493303 PPP2R5DQ14738 602 aa4.51□□□□□ -1.69
CSMD3-207ENST00000493303 NBPF9Q3BBW0 867 aa4.51□□□□□ -1.69
CSMD3-207ENST00000493303 CDC42BPAQ5VT25 1732 aa4.51□□□□□ -1.69
CSMD3-207ENST00000493303 HOXD10P28358 340 aa4.51□□□□□ -1.69
CSMD3-207ENST00000493303 FAM69CQ0P6D2 419 aa4.51□□□□□ -1.69
CSMD3-207ENST00000493303 L1TD1Q5T7N2 865 aaKnown RBP4.51□□□□□ -1.69
CSMD3-207ENST00000493303 MINK1Q8N4C8 1332 aaPredicted RBP4.51□□□□□ -1.69
CSMD3-207ENST00000493303 CDCA7Q9BWT1 371 aaPredicted RBP4.51□□□□□ -1.69
CSMD3-207ENST00000493303 RWDD1Q9H446 243 aaPredicted RBP4.51□□□□□ -1.69
CSMD3-207ENST00000493303 FRMD3A2A2Y4 597 aa4.5□□□□□ -1.69
CSMD3-207ENST00000493303 UQCRHP07919 91 aa4.5□□□□□ -1.69
CSMD3-207ENST00000493303 BCL11BQ9C0K0 894 aaPredicted RBP4.5□□□□□ -1.69
CSMD3-207ENST00000493303 PIK3C2BO00750 1634 aa4.5□□□□□ -1.69
CSMD3-207ENST00000493303 NUDT16Q96DE0 195 aaKnown RBP4.5□□□□□ -1.69
CSMD3-207ENST00000493303 POGKQ9P215 609 aa4.5□□□□□ -1.69
CSMD3-207ENST00000493303 MAST1Q9Y2H9 1570 aa4.5□□□□□ -1.69
CSMD3-207ENST00000493303 CLIP1P30622 1438 aa4.5□□□□□ -1.69
CSMD3-207ENST00000493303 B4DLN1 442 aa4.5□□□□□ -1.69
CSMD3-207ENST00000493303 MRPL12P52815 198 aaKnown RBP4.5□□□□□ -1.69
CSMD3-207ENST00000493303 DRC1Q96MC2 740 aa4.5□□□□□ -1.69
CSMD3-207ENST00000493303 EFCAB6Q5THR3 1501 aa4.5□□□□□ -1.69
CSMD3-207ENST00000493303 VIMP08670 466 aaKnown RBP4.5□□□□□ -1.69
CSMD3-207ENST00000493303 PMFBP1Q8TBY8 1022 aa4.5□□□□□ -1.69
CSMD3-207ENST00000493303 EIF2AK4Q9P2K8 1649 aaKnown RBP4.49□□□□□ -1.69
CSMD3-207ENST00000493303 MED1Q15648 1581 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-207ENST00000493303 SOCS7O14512 581 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 RXRBP28702 533 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 GJA3Q9Y6H8 435 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 ACEP12821 1306 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 TET3O43151 1660 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 APBB1O00213 710 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 CENPBP07199 599 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-207ENST00000493303 ZMYND15Q9H091 742 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 EXOSC10Q01780 885 aaKnown RBP4.49□□□□□ -1.69
CSMD3-207ENST00000493303 DDX42Q86XP3 938 aaKnown RBP eCLIP4.49□□□□□ -1.69
CSMD3-207ENST00000493303 IPO9Q96P70 1041 aaKnown RBP4.49□□□□□ -1.69
CSMD3-207ENST00000493303 SLC5A4Q9NY91 659 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 KDM2BQ8NHM5 1336 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 EIF3AQ14152 1382 aaKnown RBP4.49□□□□□ -1.69
CSMD3-207ENST00000493303 QSER1Q2KHR3 1735 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 CAPN8A6NHC0 703 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 ZNF777Q9ULD5 760 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-207ENST00000493303 PHTF1Q9UMS5 762 aa4.49□□□□□ -1.69
CSMD3-207ENST00000493303 FYCO1Q9BQS8 1478 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 SOGA1O94964 1423 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 PTGDRQ13258 359 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 SOGA3Q5TF21 947 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 PRIM1P49642 420 aaKnown RBP4.48□□□□□ -1.69
CSMD3-207ENST00000493303 AAK1Q2M2I8 961 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 KCNG4Q8TDN1 519 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 TSPOAP1O95153 1857 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 EIF3CLB5ME19 914 aaKnown RBP4.48□□□□□ -1.69
CSMD3-207ENST00000493303 PRMT3O60678 531 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 CCDC112Q8NEF3 446 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 ROCK1Q13464 1354 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 RAD21O60216 631 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 MYH16Q9H6N6 1097 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 JAG2Q9Y219 1238 aa4.48□□□□□ -1.69
CSMD3-207ENST00000493303 APBA1Q02410 837 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 TPRNQ4KMQ1 711 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 KCNH8Q96L42 1107 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 MYO5CQ9NQX4 1742 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 SALL3Q9BXA9 1300 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 RIMS1Q86UR5 1692 aaKnown RBP4.47□□□□□ -1.69
CSMD3-207ENST00000493303 ARHGEF1Q92888 912 aaKnown RBP4.47□□□□□ -1.69
CSMD3-207ENST00000493303 NHSL1Q5SYE7 1610 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 CCDC18Q5T9S5 1454 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 RAPGEF2Q9Y4G8 1499 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 TMEM131LA2VDJ0 1609 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 RGL2O15211 777 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 CDCA8Q53HL2 280 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 PAF1Q8N7H5 531 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 MBIPQ9NS73 344 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 NCOA2Q15596 1464 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 NBPF26B4DH59 902 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms