RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SH3BP5O60239 455 aa5.55□□□□□ -1.52
BRCA1-220ENST00000492859 APLP1P51693 650 aa5.55□□□□□ -1.52
BRCA1-220ENST00000492859 CCDC96Q2M329 555 aa5.55□□□□□ -1.52
BRCA1-220ENST00000492859 NBPF1Q3BBV0 1214 aa5.55□□□□□ -1.52
BRCA1-220ENST00000492859 KRI1Q8N9T8 703 aaKnown RBP5.55□□□□□ -1.52
BRCA1-220ENST00000492859 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.55□□□□□ -1.52
BRCA1-220ENST00000492859 SBNO2Q9Y2G9 1366 aa5.54□□□□□ -1.52
BRCA1-220ENST00000492859 CCDC194A0A1B0GVG4 234 aa5.54□□□□□ -1.52
BRCA1-220ENST00000492859 CARNS1A5YM72 827 aa5.54□□□□□ -1.52
BRCA1-220ENST00000492859 C2orf72A6NCS6 295 aa5.54□□□□□ -1.52
BRCA1-220ENST00000492859 KIF4AO95239 1232 aa5.54□□□□□ -1.52
BRCA1-220ENST00000492859 CNGB1Q14028 1251 aaPredicted RBP5.54□□□□□ -1.52
BRCA1-220ENST00000492859 KHSRPQ92945 711 aaKnown RBP eCLIP5.54□□□□□ -1.52
BRCA1-220ENST00000492859 YTHDC1Q96MU7 727 aaKnown RBP5.54□□□□□ -1.52
BRCA1-220ENST00000492859 METTL14Q9HCE5 456 aaKnown RBP5.54□□□□□ -1.52
BRCA1-220ENST00000492859 CASC1Q6TDU7 716 aa5.53□□□□□ -1.52
BRCA1-220ENST00000492859 DPH6Q7L8W6 267 aa5.53□□□□□ -1.52
BRCA1-220ENST00000492859 CACTIN-AS1Q8N1I8 211 aa5.53□□□□□ -1.52
BRCA1-220ENST00000492859 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.53□□□□□ -1.527e-6■■■■■ 74.5
BRCA1-220ENST00000492859 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.53□□□□□ -1.52
BRCA1-220ENST00000492859 SH3BP1Q9Y3L3 701 aa5.53□□□□□ -1.52
BRCA1-220ENST00000492859 EIF3JO75822 258 aaKnown RBP5.52□□□□□ -1.53
BRCA1-220ENST00000492859 CALRP27797 417 aaKnown RBP5.52□□□□□ -1.53
BRCA1-220ENST00000492859 SSFA2P28290 1259 aa5.52□□□□□ -1.53
BRCA1-220ENST00000492859 ZC3H6P61129 1189 aaKnown RBP5.52□□□□□ -1.53
BRCA1-220ENST00000492859 AXDND1Q5T1B0 1012 aaPredicted RBP5.52□□□□□ -1.53
BRCA1-220ENST00000492859 WDR78Q5VTH9 848 aa5.52□□□□□ -1.53
BRCA1-220ENST00000492859 DDRGK1Q96HY6 314 aa5.52□□□□□ -1.53
BRCA1-220ENST00000492859 SPOCK3Q9BQ16 436 aa5.52□□□□□ -1.53
BRCA1-220ENST00000492859 FAM205CA6NFA0 338 aa5.51□□□□□ -1.53
BRCA1-220ENST00000492859 KIF3CO14782 793 aa5.51□□□□□ -1.53
BRCA1-220ENST00000492859 SNPHO15079 494 aa5.51□□□□□ -1.53
BRCA1-220ENST00000492859 LIG1P18858 919 aa5.51□□□□□ -1.53
BRCA1-220ENST00000492859 NBPF20Q3BBV1 942 aa5.51□□□□□ -1.53
BRCA1-220ENST00000492859 NAALADL2Q58DX5 795 aa5.51□□□□□ -1.53
BRCA1-220ENST00000492859 LARGE2Q8N3Y3 721 aa5.51□□□□□ -1.53
BRCA1-220ENST00000492859 U2SURPO15042 1029 aaKnown RBP5.5□□□□□ -1.53
BRCA1-220ENST00000492859 ANP32CO43423 234 aa5.5□□□□□ -1.53
BRCA1-220ENST00000492859 EPB41L2O43491 1005 aaKnown RBP5.5□□□□□ -1.53
BRCA1-220ENST00000492859 ZNF16P17020 682 aaPredicted RBP5.5□□□□□ -1.53
BRCA1-220ENST00000492859 EMP3P54852 163 aa5.5□□□□□ -1.53
BRCA1-220ENST00000492859 RHBDL3P58872 404 aa5.5□□□□□ -1.53
BRCA1-220ENST00000492859 PSME1Q06323 249 aa5.5□□□□□ -1.53
BRCA1-220ENST00000492859 FAN1Q9Y2M0 1017 aa5.5□□□□□ -1.53
BRCA1-220ENST00000492859 TSPAN18Q96SJ8 248 aa5.5□□□□□ -1.53
BRCA1-220ENST00000492859 USTQ9Y2C2 406 aa5.5□□□□□ -1.53
BRCA1-220ENST00000492859 NRDCO43847 1150 aa5.49□□□□□ -1.53
BRCA1-220ENST00000492859 POLD1P28340 1107 aa5.49□□□□□ -1.53
BRCA1-220ENST00000492859 SF3A1Q15459 793 aaKnown RBP5.49□□□□□ -1.53
BRCA1-220ENST00000492859 ARSIQ5FYB1 569 aa5.49□□□□□ -1.53
BRCA1-220ENST00000492859 ARMCX6Q7L4S7 300 aa5.49□□□□□ -1.53
BRCA1-220ENST00000492859 CXorf38Q8TB03 319 aa5.49□□□□□ -1.53
BRCA1-220ENST00000492859 HS3ST6Q96QI5 342 aa5.49□□□□□ -1.53
BRCA1-220ENST00000492859 GOPCQ9HD26 462 aa5.49□□□□□ -1.53
BRCA1-220ENST00000492859 GABBR1Q9UBS5 961 aa5.49□□□□□ -1.53
BRCA1-220ENST00000492859 HOXB1P14653 301 aaPredicted RBP5.48□□□□□ -1.53
BRCA1-220ENST00000492859 BDNFP23560 247 aa5.48□□□□□ -1.53
BRCA1-220ENST00000492859 GYS2P54840 703 aa5.48□□□□□ -1.53
BRCA1-220ENST00000492859 ZNF280DQ6N043 979 aa5.48□□□□□ -1.53
BRCA1-220ENST00000492859 GPR153Q6NV75 609 aa5.48□□□□□ -1.53
BRCA1-220ENST00000492859 CEP120Q8N960 986 aa5.48□□□□□ -1.53
BRCA1-220ENST00000492859 GNL3LQ9NVN8 582 aaKnown RBP5.48□□□□□ -1.53
BRCA1-220ENST00000492859 CHPF2Q9P2E5 772 aa5.48□□□□□ -1.53
BRCA1-220ENST00000492859 HDAC5Q9UQL6 1122 aa5.48□□□□□ -1.53
BRCA1-220ENST00000492859 ZNF500O60304 480 aaPredicted RBP5.47□□□□□ -1.53
BRCA1-220ENST00000492859 PPP4CP60510 307 aa5.47□□□□□ -1.53
BRCA1-220ENST00000492859 IGBP1P78318 339 aa5.47□□□□□ -1.53
BRCA1-220ENST00000492859 DOK7Q18PE1 504 aa5.47□□□□□ -1.53
BRCA1-220ENST00000492859 C4orf46Q504U0 113 aa5.47□□□□□ -1.53
BRCA1-220ENST00000492859 C11orf96Q7Z7L8 435 aa5.47□□□□□ -1.53
BRCA1-220ENST00000492859 ZNF710Q8N1W2 664 aa5.47□□□□□ -1.53
BRCA1-220ENST00000492859 CCDC85AQ96PX6 553 aaPredicted RBP5.47□□□□□ -1.53
BRCA1-220ENST00000492859 ARHGEF10LQ9HCE6 1279 aa5.47□□□□□ -1.53
BRCA1-220ENST00000492859 COMMD10Q9Y6G5 202 aa5.47□□□□□ -1.53
BRCA1-220ENST00000492859 GOLGA6CA6NDK9 693 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 GOLGA6BA6NDN3 693 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 TBC1D12O60347 775 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 WDHD1O75717 1129 aaPredicted RBP5.46□□□□□ -1.53
BRCA1-220ENST00000492859 GOLGA6DP0CG33 693 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 PTPROQ16827 1216 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 CSPP1Q1MSJ5 1256 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 EGFLAMQ63HQ2 1017 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 DNAJC14Q6Y2X3 702 aaPredicted RBP5.46□□□□□ -1.53
BRCA1-220ENST00000492859 GET4Q7L5D6 327 aaPredicted RBP5.46□□□□□ -1.53
BRCA1-220ENST00000492859 NOP9Q86U38 636 aaKnown RBP5.46□□□□□ -1.53
BRCA1-220ENST00000492859 AMOTL1Q8IY63 956 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 KRTAP3-3Q9BYR6 98 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 KRTAP3-2Q9BYR7 98 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 JADE2Q9NQC1 790 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 GOLGA6AQ9NYA3 693 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 ZNF330Q9Y3S2 320 aaPredicted RBP5.46□□□□□ -1.53
BRCA1-220ENST00000492859 NUB1Q9Y5A7 615 aa5.46□□□□□ -1.53
BRCA1-220ENST00000492859 hCG_2014768A0A024R1R8 64 aa5.46□□□□□ -1.54
BRCA1-220ENST00000492859 GOLIM4O00461 696 aa5.46□□□□□ -1.54
BRCA1-220ENST00000492859 DHX16O60231 1041 aaKnown RBP5.46□□□□□ -1.54
BRCA1-220ENST00000492859 NOM1Q5C9Z4 860 aaKnown RBP5.46□□□□□ -1.54
BRCA1-220ENST00000492859 ZKSCAN2Q63HK3 967 aa5.46□□□□□ -1.54
BRCA1-220ENST00000492859 SMYD5Q6GMV2 418 aa5.46□□□□□ -1.54
BRCA1-220ENST00000492859 CCER1Q8TC90 406 aaPredicted RBP5.46□□□□□ -1.54
BRCA1-220ENST00000492859 COG6Q9Y2V7 657 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms