RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	KCNA6	P17658	529 aa		13.44	□□□□□ -0.26
USP4-213	ENST00000488520	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.44	□□□□□ -0.26
USP4-213	ENST00000488520	NWD1	Q149M9	1564 aa		13.44	□□□□□ -0.26
USP4-213	ENST00000488520	PCDHB8	Q9UN66	801 aa		13.43	□□□□□ -0.26
USP4-213	ENST00000488520	LMTK2	Q8IWU2	1503 aa		13.43	□□□□□ -0.26
USP4-213	ENST00000488520	FGD6	Q6ZV73	1430 aa		13.41	□□□□□ -0.26
USP4-213	ENST00000488520	ANKRD30A	Q9BXX3	1397 aa		13.41	□□□□□ -0.26
USP4-213	ENST00000488520	ATN1	P54259	1190 aa	Predicted RBP	13.4	□□□□□ -0.26
USP4-213	ENST00000488520	MSH6	P52701	1360 aa		13.4	□□□□□ -0.26
USP4-213	ENST00000488520	NKTR	P30414	1462 aa	Known RBP	13.4	□□□□□ -0.26
USP4-213	ENST00000488520	NOS1	P29475	1434 aa		13.39	□□□□□ -0.27
USP4-213	ENST00000488520	TMEM131L	A2VDJ0	1609 aa		13.39	□□□□□ -0.27
USP4-213	ENST00000488520	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.39	□□□□□ -0.27
USP4-213	ENST00000488520	TTLL13P	A6NNM8	815 aa		13.39	□□□□□ -0.27
USP4-213	ENST00000488520	PELP1	Q8IZL8	1130 aa	Known RBP	13.39	□□□□□ -0.27
USP4-213	ENST00000488520	COL16A1	Q07092	1604 aa	Predicted RBP	13.38	□□□□□ -0.27
USP4-213	ENST00000488520		E9PCH4	1651 aa		13.37	□□□□□ -0.27
USP4-213	ENST00000488520	SLAIN2	Q9P270	581 aa		13.37	□□□□□ -0.27
USP4-213	ENST00000488520	TMEM106C	Q9BVX2	250 aa		13.36	□□□□□ -0.27
USP4-213	ENST00000488520	PPP1R15A	O75807	674 aa	Predicted RBP	13.35	□□□□□ -0.27
USP4-213	ENST00000488520	CHGA	P10645	457 aa	Known RBP	13.35	□□□□□ -0.27
USP4-213	ENST00000488520	SLC52A1	Q9NWF4	448 aa		13.35	□□□□□ -0.27
USP4-213	ENST00000488520	SHPRH	Q149N8	1683 aa		13.34	□□□□□ -0.27
USP4-213	ENST00000488520	ZFYVE9	O95405	1425 aa		13.34	□□□□□ -0.27
USP4-213	ENST00000488520	RIMS2	Q9UQ26	1411 aa		13.34	□□□□□ -0.27
USP4-213	ENST00000488520	FAM50A	Q14320	339 aa	Known RBP	13.34	□□□□□ -0.27
USP4-213	ENST00000488520	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.34	□□□□□ -0.27
USP4-213	ENST00000488520	SLC39A7	Q92504	469 aa		13.34	□□□□□ -0.27
USP4-213	ENST00000488520	ADGRL2	O95490	1459 aa		13.34	□□□□□ -0.27
USP4-213	ENST00000488520	JCAD	Q9P266	1359 aa		13.33	□□□□□ -0.27
USP4-213	ENST00000488520	PLEKHG1	Q9ULL1	1385 aa		13.33	□□□□□ -0.27
USP4-213	ENST00000488520	C14orf37	Q86TY3	774 aa		13.33	□□□□□ -0.28
USP4-213	ENST00000488520	RPRD2	Q5VT52	1461 aa	Known RBP	13.33	□□□□□ -0.28
USP4-213	ENST00000488520	UNC13B	O14795	1591 aa		13.32	□□□□□ -0.28
USP4-213	ENST00000488520	LRP6	O75581	1613 aa		13.31	□□□□□ -0.28
USP4-213	ENST00000488520	ANKRD50	Q9ULJ7	1429 aa		13.31	□□□□□ -0.28
USP4-213	ENST00000488520	C7	P10643	843 aa		13.31	□□□□□ -0.28
USP4-213	ENST00000488520	TRIM35	Q9UPQ4	493 aa		13.31	□□□□□ -0.28
USP4-213	ENST00000488520	HDGF	P51858	240 aa	Known RBP	13.3	□□□□□ -0.28
USP4-213	ENST00000488520	MEX3C	Q5U5Q3	659 aa	Known RBP	13.3	□□□□□ -0.28
USP4-213	ENST00000488520	METRN	Q9UJH8	293 aa		13.3	□□□□□ -0.28
USP4-213	ENST00000488520	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.29	□□□□□ -0.28
USP4-213	ENST00000488520	PDAP1	Q13442	181 aa	Known RBP	13.29	□□□□□ -0.28
USP4-213	ENST00000488520	TRIM52	Q96A61	297 aa		13.29	□□□□□ -0.28
USP4-213	ENST00000488520	DIP2A	Q14689	1571 aa		13.28	□□□□□ -0.28
USP4-213	ENST00000488520	PSEN1	P49768	467 aa		13.28	□□□□□ -0.28
USP4-213	ENST00000488520	TBX22	Q9Y458	520 aa		13.28	□□□□□ -0.28
USP4-213	ENST00000488520	IQGAP3	Q86VI3	1631 aa		13.28	□□□□□ -0.28
USP4-213	ENST00000488520	ECM2	O94769	699 aa	Predicted RBP	13.27	□□□□□ -0.29
USP4-213	ENST00000488520	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.27	□□□□□ -0.29
USP4-213	ENST00000488520	ADAMTS13	Q76LX8	1427 aa		13.27	□□□□□ -0.29
USP4-213	ENST00000488520	SPHKAP	Q2M3C7	1700 aa		13.27	□□□□□ -0.29
USP4-213	ENST00000488520	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.26	□□□□□ -0.29
USP4-213	ENST00000488520	NUTM2E	B1AL46	878 aa	Predicted RBP	13.26	□□□□□ -0.29
USP4-213	ENST00000488520	TRPM2	O94759	1503 aa		13.26	□□□□□ -0.29
USP4-213	ENST00000488520	ATF3	P18847	181 aa		13.26	□□□□□ -0.29
USP4-213	ENST00000488520	LHX8	Q68G74	356 aa		13.26	□□□□□ -0.29
USP4-213	ENST00000488520	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.26	□□□□□ -0.29
USP4-213	ENST00000488520	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.26	□□□□□ -0.29
USP4-213	ENST00000488520	NHSL1	Q5SYE7	1610 aa		13.25	□□□□□ -0.29
USP4-213	ENST00000488520	NCOA3	Q9Y6Q9	1424 aa		13.25	□□□□□ -0.29
USP4-213	ENST00000488520	SPATA31A6	Q5VVP1	1343 aa		13.25	□□□□□ -0.29
USP4-213	ENST00000488520	CADPS2	Q86UW7	1296 aa		13.25	□□□□□ -0.29
USP4-213	ENST00000488520	NRXN3	Q9Y4C0	1643 aa		13.24	□□□□□ -0.29
USP4-213	ENST00000488520	RIOK3	O14730	519 aa	Known RBP	13.24	□□□□□ -0.29
USP4-213	ENST00000488520	ZNF772	Q68DY9	489 aa	Predicted RBP	13.24	□□□□□ -0.29
USP4-213	ENST00000488520	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
USP4-213	ENST00000488520	RNF25	Q96BH1	459 aa	Predicted RBP	13.24	□□□□□ -0.29
USP4-213	ENST00000488520	C19orf44	Q9H6X5	657 aa		13.24	□□□□□ -0.29
USP4-213	ENST00000488520	KIF1B	O60333	1816 aa		13.24	□□□□□ -0.29
USP4-213	ENST00000488520	XRN1	Q8IZH2	1706 aa	Known RBP	13.24	□□□□□ -0.29
USP4-213	ENST00000488520	PTPRU	Q92729	1446 aa		13.23	□□□□□ -0.29
USP4-213	ENST00000488520	IER5L	Q5T953	404 aa		13.23	□□□□□ -0.29
USP4-213	ENST00000488520	AMOTL2	Q9Y2J4	779 aa		13.23	□□□□□ -0.29
USP4-213	ENST00000488520	NALCN	Q8IZF0	1738 aa		13.22	□□□□□ -0.29
USP4-213	ENST00000488520	PIK3R4	Q99570	1358 aa		13.21	□□□□□ -0.29
USP4-213	ENST00000488520	BRINP3	Q76B58	766 aa		13.21	□□□□□ -0.29
USP4-213	ENST00000488520	ASXL1	Q8IXJ9	1541 aa		13.2	□□□□□ -0.3
USP4-213	ENST00000488520	RXRB	P28702	533 aa		13.2	□□□□□ -0.3
USP4-213	ENST00000488520	ITGAE	P38570	1179 aa		13.19	□□□□□ -0.3
USP4-213	ENST00000488520	AFF2	P51816	1311 aa		13.18	□□□□□ -0.3
USP4-213	ENST00000488520	NUP155	O75694	1391 aa		13.18	□□□□□ -0.3
USP4-213	ENST00000488520	SETBP1	Q9Y6X0	1596 aa		13.17	□□□□□ -0.3
USP4-213	ENST00000488520	VGF	O15240	615 aa	Predicted RBP	13.17	□□□□□ -0.3
USP4-213	ENST00000488520	GOLGA2	Q08379	1002 aa		13.17	□□□□□ -0.3
USP4-213	ENST00000488520	ZNF326	Q5BKZ1	582 aa	Known RBP	13.17	□□□□□ -0.3
USP4-213	ENST00000488520	DDX17	Q92841	729 aa	Known RBP	13.17	□□□□□ -0.3
USP4-213	ENST00000488520	MST1R	Q04912	1400 aa		13.16	□□□□□ -0.3
USP4-213	ENST00000488520	SEC24B	O95487	1268 aa		13.16	□□□□□ -0.3
USP4-213	ENST00000488520	CLTCL1	P53675	1640 aa		13.16	□□□□□ -0.3
USP4-213	ENST00000488520	DCC	P43146	1447 aa		13.15	□□□□□ -0.3
USP4-213	ENST00000488520	POTEF	A5A3E0	1075 aa		13.15	□□□□□ -0.3
USP4-213	ENST00000488520	C8orf37	Q96NL8	207 aa		13.15	□□□□□ -0.3
USP4-213	ENST00000488520	TAOK2	Q9UL54	1235 aa		13.15	□□□□□ -0.3
USP4-213	ENST00000488520	SETD5	Q9C0A6	1442 aa		13.14	□□□□□ -0.31
USP4-213	ENST00000488520	POTEB2	H3BUK9	544 aa		13.14	□□□□□ -0.31
USP4-213	ENST00000488520	MET	P08581	1390 aa		13.14	□□□□□ -0.31
USP4-213	ENST00000488520	ROCK1	Q13464	1354 aa		13.14	□□□□□ -0.31
USP4-213	ENST00000488520	MARF1	Q9Y4F3	1742 aa	Known RBP	13.13	□□□□□ -0.31
USP4-213	ENST00000488520	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms