RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 EIF3AQ14152 1382 aaKnown RBP9.51□□□□□ -0.89
PTPRE-209ENST00000487428 MST1RQ04912 1400 aa9.51□□□□□ -0.89
PTPRE-209ENST00000487428 ANKARQ7Z5J8 1434 aa9.51□□□□□ -0.89
PTPRE-209ENST00000487428 NHSL1Q5SYE7 1610 aa9.51□□□□□ -0.89
PTPRE-209ENST00000487428 KIF1AQ12756 1690 aa9.51□□□□□ -0.89
PTPRE-209ENST00000487428 RGPD8O14715 1765 aaPredicted RBP9.5□□□□□ -0.89
PTPRE-209ENST00000487428 AHDC1Q5TGY3 1603 aaPredicted RBP9.5□□□□□ -0.89
PTPRE-209ENST00000487428 NBPF1Q3BBV0 1214 aa9.5□□□□□ -0.89
PTPRE-209ENST00000487428 ROBO1Q9Y6N7 1651 aa9.5□□□□□ -0.89
PTPRE-209ENST00000487428 USP32Q8NFA0 1604 aa9.49□□□□□ -0.89
PTPRE-209ENST00000487428 TOPAZ1Q8N9V7 1692 aa9.49□□□□□ -0.89
PTPRE-209ENST00000487428 PUS7Q96PZ0 661 aaKnown RBP9.49□□□□□ -0.89
PTPRE-209ENST00000487428 TULP4Q9NRJ4 1543 aa9.48□□□□□ -0.89
PTPRE-209ENST00000487428 PLEKHH1Q9ULM0 1364 aa9.48□□□□□ -0.89
PTPRE-209ENST00000487428 C1orf167Q5SNV9 1468 aa9.47□□□□□ -0.89
PTPRE-209ENST00000487428 ATF3P18847 181 aa9.47□□□□□ -0.89
PTPRE-209ENST00000487428 PRAM1Q96QH2 718 aa9.47□□□□□ -0.89
PTPRE-209ENST00000487428 SLAIN2Q9P270 581 aa9.47□□□□□ -0.89
PTPRE-209ENST00000487428 CENPJQ9HC77 1338 aaPredicted RBP9.47□□□□□ -0.89
PTPRE-209ENST00000487428 UBAP1LF5GYI3 381 aa9.46□□□□□ -0.9
PTPRE-209ENST00000487428 WAPLQ7Z5K2 1190 aa9.46□□□□□ -0.9
PTPRE-209ENST00000487428 STK26Q9P289 416 aa9.46□□□□□ -0.9
PTPRE-209ENST00000487428 TRAK1Q9UPV9 953 aa9.46□□□□□ -0.9
PTPRE-209ENST00000487428 CARD11Q9BXL7 1154 aa9.45□□□□□ -0.9
PTPRE-209ENST00000487428 POGKQ9P215 609 aa9.45□□□□□ -0.9
PTPRE-209ENST00000487428 ATP7BP35670 1465 aa9.45□□□□□ -0.9
PTPRE-209ENST00000487428 COL16A1Q07092 1604 aaPredicted RBP9.45□□□□□ -0.9
PTPRE-209ENST00000487428 WASLO00401 505 aaPredicted RBP9.44□□□□□ -0.9
PTPRE-209ENST00000487428 SENP3Q9H4L4 574 aaPredicted RBP9.44□□□□□ -0.9
PTPRE-209ENST00000487428 SHPRHQ149N8 1683 aa9.44□□□□□ -0.9
PTPRE-209ENST00000487428 PHLPP1O60346 1717 aa9.44□□□□□ -0.9
PTPRE-209ENST00000487428 AKAP12Q02952 1782 aa9.43□□□□□ -0.9
PTPRE-209ENST00000487428 BRD4O60885 1362 aaPredicted RBP9.43□□□□□ -0.9
PTPRE-209ENST00000487428 USP47Q96K76 1375 aa9.43□□□□□ -0.9
PTPRE-209ENST00000487428 C14orf37Q86TY3 774 aa9.43□□□□□ -0.9
PTPRE-209ENST00000487428 NINLQ9Y2I6 1382 aa9.42□□□□□ -0.9
PTPRE-209ENST00000487428 BRINP3Q76B58 766 aa9.42□□□□□ -0.9
PTPRE-209ENST00000487428 TESK2Q96S53 571 aa9.42□□□□□ -0.9
PTPRE-209ENST00000487428 TRPM3Q9HCF6 1732 aaPredicted RBP9.42□□□□□ -0.9
PTPRE-209ENST00000487428 COL22A1Q8NFW1 1626 aaPredicted RBP9.42□□□□□ -0.9
PTPRE-209ENST00000487428 POLR3AO14802 1390 aaPredicted RBP9.41□□□□□ -0.9
PTPRE-209ENST00000487428 ATAD2Q6PL18 1390 aa9.41□□□□□ -0.9
PTPRE-209ENST00000487428 EVC2Q86UK5 1308 aa9.41□□□□□ -0.9
PTPRE-209ENST00000487428 RBM33Q96EV2 1170 aaKnown RBP9.41□□□□□ -0.9
PTPRE-209ENST00000487428 PXDNQ92626 1479 aa9.4□□□□□ -0.9
PTPRE-209ENST00000487428 MON2Q7Z3U7 1717 aa9.4□□□□□ -0.9
PTPRE-209ENST00000487428 SOS2Q07890 1332 aaPredicted RBP9.4□□□□□ -0.9
PTPRE-209ENST00000487428 NPHP3Q7Z494 1330 aa9.4□□□□□ -0.9
PTPRE-209ENST00000487428 ALS2Q96Q42 1657 aa9.4□□□□□ -0.9
PTPRE-209ENST00000487428 PLEKHG3A1L390 1219 aa9.4□□□□□ -0.9
PTPRE-209ENST00000487428 CCDC61Q9Y6R9 512 aa9.4□□□□□ -0.9
PTPRE-209ENST00000487428 USP54Q70EL1 1684 aa9.39□□□□□ -0.91
PTPRE-209ENST00000487428 MINK1Q8N4C8 1332 aaPredicted RBP9.38□□□□□ -0.91
PTPRE-209ENST00000487428 PRR36Q9H6K5 1346 aa9.38□□□□□ -0.91
PTPRE-209ENST00000487428 ST20-MTHFSA0A0A6YYL1 179 aa9.38□□□□□ -0.91
PTPRE-209ENST00000487428 ZEB1P37275 1124 aaPredicted RBP9.38□□□□□ -0.91
PTPRE-209ENST00000487428 EIF4G2P78344 907 aaKnown RBP eCLIP9.38□□□□□ -0.91
PTPRE-209ENST00000487428 CDCA8Q53HL2 280 aa9.38□□□□□ -0.91
PTPRE-209ENST00000487428 CDK19Q9BWU1 502 aa9.38□□□□□ -0.91
PTPRE-209ENST00000487428 SBNO1A3KN83 1393 aa9.37□□□□□ -0.91
PTPRE-209ENST00000487428 MARF1Q9Y4F3 1742 aaKnown RBP9.37□□□□□ -0.91
PTPRE-209ENST00000487428 CRYBG1Q9Y4K1 1723 aa9.37□□□□□ -0.91
PTPRE-209ENST00000487428 MYOM1P52179 1685 aa9.37□□□□□ -0.91
PTPRE-209ENST00000487428 ILDR1Q86SU0 546 aaPredicted RBP9.37□□□□□ -0.91
PTPRE-209ENST00000487428 NUDT16Q96DE0 195 aaKnown RBP9.37□□□□□ -0.91
PTPRE-209ENST00000487428 CPSF1Q10570 1443 aaKnown RBP9.37□□□□□ -0.91
PTPRE-209ENST00000487428 MED1Q15648 1581 aaPredicted RBP9.37□□□□□ -0.91
PTPRE-209ENST00000487428 NRKQ7Z2Y5 1582 aa9.37□□□□□ -0.91
PTPRE-209ENST00000487428 SAFB2Q14151 953 aaKnown RBP eCLIP9.36□□□□□ -0.91
PTPRE-209ENST00000487428 ORAI2Q96SN7 254 aa9.36□□□□□ -0.91
PTPRE-209ENST00000487428 PHF8Q9UPP1 1060 aa9.36□□□□□ -0.91
PTPRE-209ENST00000487428 SSH2Q76I76 1423 aa9.36□□□□□ -0.91
PTPRE-209ENST00000487428 JCADQ9P266 1359 aa9.36□□□□□ -0.91
PTPRE-209ENST00000487428 HSPA1LP34931 641 aa9.35□□□□□ -0.91
PTPRE-209ENST00000487428 TMF1P82094 1093 aa9.35□□□□□ -0.91
PTPRE-209ENST00000487428 ESCO1Q5FWF5 840 aa9.35□□□□□ -0.91
PTPRE-209ENST00000487428 PPIP5K1Q6PFW1 1433 aa9.35□□□□□ -0.91
PTPRE-209ENST00000487428 LRRC59Q96AG4 307 aaKnown RBP9.35□□□□□ -0.91
PTPRE-209ENST00000487428 ABCA3Q99758 1704 aa9.35□□□□□ -0.91
PTPRE-209ENST00000487428 ZNF692Q9BU19 519 aaPredicted RBP9.35□□□□□ -0.91
PTPRE-209ENST00000487428 HIRIP3Q9BW71 556 aaPredicted RBP9.35□□□□□ -0.91
PTPRE-209ENST00000487428 SPATA31A6Q5VVP1 1343 aa9.34□□□□□ -0.91
PTPRE-209ENST00000487428 PIP4K2BP78356 416 aa9.34□□□□□ -0.91
PTPRE-209ENST00000487428 PSME1Q06323 249 aa9.34□□□□□ -0.91
PTPRE-209ENST00000487428 CD163L1Q9NR16 1453 aa9.34□□□□□ -0.91
PTPRE-209ENST00000487428 USP6P35125 1406 aa9.33□□□□□ -0.92
PTPRE-209ENST00000487428 TNS3Q68CZ2 1445 aa9.33□□□□□ -0.92
PTPRE-209ENST00000487428 SRPK2P78362 688 aaKnown RBP9.33□□□□□ -0.92
PTPRE-209ENST00000487428 ARHGEF10O15013 1369 aa9.33□□□□□ -0.92
PTPRE-209ENST00000487428 SPATA31A3Q5VYP0 1347 aa9.32□□□□□ -0.92
PTPRE-209ENST00000487428 FOXO3O43524 673 aa9.32□□□□□ -0.92
PTPRE-209ENST00000487428 PNPLA6Q8IY17 1366 aa9.32□□□□□ -0.92
PTPRE-209ENST00000487428 DISP3Q9P2K9 1392 aa9.32□□□□□ -0.92
PTPRE-209ENST00000487428 ACEP12821 1306 aa9.31□□□□□ -0.92
PTPRE-209ENST00000487428 HSPA5P11021 654 aaKnown RBP9.31□□□□□ -0.92
PTPRE-209ENST00000487428 CABP2Q9NPB3 220 aa9.31□□□□□ -0.92
PTPRE-209ENST00000487428 ANKRD36BQ8N2N9 1353 aa9.31□□□□□ -0.92
PTPRE-209ENST00000487428 TTC21AQ8NDW8 1320 aa9.31□□□□□ -0.92
PTPRE-209ENST00000487428 SCAF1Q9H7N4 1312 aaKnown RBP9.31□□□□□ -0.92
PTPRE-209ENST00000487428 PIK3C2AO00443 1686 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms