RNA–Protein interactions for RNA: ENST00000487194.1

VAMP3-203, Transcript of vesicle associated membrane protein 3, humanhuman

TSL 4

Gene VAMP3, Length 274 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-203ENST00000487194 NINLQ9Y2I6 1382 aa8.39□□□□□ -1.07
VAMP3-203ENST00000487194 ANKLE2Q86XL3 938 aa8.39□□□□□ -1.07
VAMP3-203ENST00000487194 YTHDC1Q96MU7 727 aaKnown RBP8.39□□□□□ -1.07
VAMP3-203ENST00000487194 SENP3Q9H4L4 574 aaPredicted RBP8.39□□□□□ -1.07
VAMP3-203ENST00000487194 KNDC1Q76NI1 1749 aa8.39□□□□□ -1.07
VAMP3-203ENST00000487194 ATAD2Q6PL18 1390 aa8.38□□□□□ -1.07
VAMP3-203ENST00000487194 PIK3R4Q99570 1358 aa8.38□□□□□ -1.07
VAMP3-203ENST00000487194 NPC1L1Q9UHC9 1359 aa8.38□□□□□ -1.07
VAMP3-203ENST00000487194 CPS1P31327 1500 aa8.38□□□□□ -1.07
VAMP3-203ENST00000487194 TULP4Q9NRJ4 1543 aa8.38□□□□□ -1.07
VAMP3-203ENST00000487194 PARD3Q8TEW0 1356 aa8.37□□□□□ -1.07
VAMP3-203ENST00000487194 MYOM1P52179 1685 aa8.37□□□□□ -1.07
VAMP3-203ENST00000487194 MINK1Q8N4C8 1332 aaPredicted RBP8.37□□□□□ -1.07
VAMP3-203ENST00000487194 MYBBP1AQ9BQG0 1328 aaKnown RBP8.37□□□□□ -1.07
VAMP3-203ENST00000487194 SRPK2P78362 688 aaKnown RBP8.37□□□□□ -1.07
VAMP3-203ENST00000487194 SAFB2Q14151 953 aaKnown RBP eCLIP8.37□□□□□ -1.07
VAMP3-203ENST00000487194 TMC1Q8TDI8 760 aa8.37□□□□□ -1.07
VAMP3-203ENST00000487194 MRS2Q9HD23 443 aa8.37□□□□□ -1.07
VAMP3-203ENST00000487194 SLC26A8Q96RN1 970 aa8.36□□□□□ -1.07
VAMP3-203ENST00000487194 BRD4O60885 1362 aaPredicted RBP8.35□□□□□ -1.07
VAMP3-203ENST00000487194 AMER1Q5JTC6 1135 aaPredicted RBP8.35□□□□□ -1.07
VAMP3-203ENST00000487194 WAPLQ7Z5K2 1190 aa8.35□□□□□ -1.07
VAMP3-203ENST00000487194 NLRP13Q86W25 1043 aa8.35□□□□□ -1.07
VAMP3-203ENST00000487194 CDK19Q9BWU1 502 aa8.35□□□□□ -1.07
VAMP3-203ENST00000487194 CABP2Q9NPB3 220 aa8.35□□□□□ -1.07
VAMP3-203ENST00000487194 PTCH1Q13635 1447 aa8.35□□□□□ -1.07
VAMP3-203ENST00000487194 ANKRD36BQ8N2N9 1353 aa8.35□□□□□ -1.07
VAMP3-203ENST00000487194 CNGB1Q14028 1251 aaPredicted RBP8.34□□□□□ -1.07
VAMP3-203ENST00000487194 CC2D1BQ5T0F9 858 aaKnown RBP8.34□□□□□ -1.07
VAMP3-203ENST00000487194 SLC12A5Q9H2X9 1139 aa8.34□□□□□ -1.07
VAMP3-203ENST00000487194 TERF2IPQ9NYB0 399 aa8.34□□□□□ -1.07
VAMP3-203ENST00000487194 AMOTL2Q9Y2J4 779 aa8.34□□□□□ -1.07
VAMP3-203ENST00000487194 ROBO2Q9HCK4 1378 aa8.34□□□□□ -1.07
VAMP3-203ENST00000487194 PLEKHH1Q9ULM0 1364 aa8.34□□□□□ -1.07
VAMP3-203ENST00000487194 WASLO00401 505 aaPredicted RBP8.33□□□□□ -1.08
VAMP3-203ENST00000487194 PTPRUQ92729 1446 aa8.33□□□□□ -1.08
VAMP3-203ENST00000487194 CGNL1Q0VF96 1302 aa8.32□□□□□ -1.08
VAMP3-203ENST00000487194 ADGRB2O60241 1585 aa8.32□□□□□ -1.08
VAMP3-203ENST00000487194 NPHP4O75161 1426 aaPredicted RBP8.32□□□□□ -1.08
VAMP3-203ENST00000487194 NSD3Q9BZ95 1437 aa8.32□□□□□ -1.08
VAMP3-203ENST00000487194 HDGFL2Q7Z4V5 671 aaPredicted RBP8.32□□□□□ -1.08
VAMP3-203ENST00000487194 CARD14Q9BXL6 1004 aa8.32□□□□□ -1.08
VAMP3-203ENST00000487194 NSD2O96028 1365 aa8.32□□□□□ -1.08
VAMP3-203ENST00000487194 USP32Q8NFA0 1604 aa8.32□□□□□ -1.08
VAMP3-203ENST00000487194 CCDC184Q52MB2 194 aa8.31□□□□□ -1.08
VAMP3-203ENST00000487194 XRN1Q8IZH2 1706 aaKnown RBP8.31□□□□□ -1.08
VAMP3-203ENST00000487194 ATP7BP35670 1465 aa8.31□□□□□ -1.08
VAMP3-203ENST00000487194 FAM9BQ8IZU0 186 aa8.3□□□□□ -1.08
VAMP3-203ENST00000487194 NUDT16Q96DE0 195 aaKnown RBP8.3□□□□□ -1.08
VAMP3-203ENST00000487194 CCDC61Q9Y6R9 512 aa8.3□□□□□ -1.08
VAMP3-203ENST00000487194 A0A1W2PP64 1363 aa8.3□□□□□ -1.08
VAMP3-203ENST00000487194 PPP2R1AP30153 589 aa8.29□□□□□ -1.08
VAMP3-203ENST00000487194 MORC1Q86VD1 984 aa8.29□□□□□ -1.08
VAMP3-203ENST00000487194 PNISRQ8TF01 805 aaKnown RBP8.29□□□□□ -1.08
VAMP3-203ENST00000487194 CABP1Q9NZU7 370 aa8.29□□□□□ -1.08
VAMP3-203ENST00000487194 PPIP5K1Q6PFW1 1433 aa8.29□□□□□ -1.08
VAMP3-203ENST00000487194 NCKAP5LQ9HCH0 1330 aa8.29□□□□□ -1.08
VAMP3-203ENST00000487194 INSRP06213 1382 aa8.28□□□□□ -1.08
VAMP3-203ENST00000487194 KCNA6P17658 529 aa8.28□□□□□ -1.08
VAMP3-203ENST00000487194 HNRNPUQ00839 825 aaKnown RBP eCLIP8.28□□□□□ -1.08
VAMP3-203ENST00000487194 ZNF692Q9BU19 519 aaPredicted RBP8.28□□□□□ -1.08
VAMP3-203ENST00000487194 CHD2O14647 1828 aaKnown RBP8.28□□□□□ -1.08
VAMP3-203ENST00000487194 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.28□□□□□ -1.08
VAMP3-203ENST00000487194 CD163L1Q9NR16 1453 aa8.27□□□□□ -1.09
VAMP3-203ENST00000487194 CDC42BPGQ6DT37 1551 aa8.27□□□□□ -1.09
VAMP3-203ENST00000487194 PLEKHG3A1L390 1219 aa8.26□□□□□ -1.09
VAMP3-203ENST00000487194 CPSF1Q10570 1443 aaKnown RBP8.26□□□□□ -1.09
VAMP3-203ENST00000487194 EDC4Q6P2E9 1401 aaKnown RBP8.26□□□□□ -1.09
VAMP3-203ENST00000487194 ANKARQ7Z5J8 1434 aa8.26□□□□□ -1.09
VAMP3-203ENST00000487194 NWD1Q149M9 1564 aa8.25□□□□□ -1.09
VAMP3-203ENST00000487194 ZBED9Q6R2W3 1325 aa8.25□□□□□ -1.09
VAMP3-203ENST00000487194 PRR36Q9H6K5 1346 aa8.25□□□□□ -1.09
VAMP3-203ENST00000487194 POLR3AO14802 1390 aaPredicted RBP8.24□□□□□ -1.09
VAMP3-203ENST00000487194 ITSN1Q15811 1721 aa8.24□□□□□ -1.09
VAMP3-203ENST00000487194 FYB1O15117 783 aa8.24□□□□□ -1.09
VAMP3-203ENST00000487194 WDR43Q15061 677 aaKnown RBP eCLIP8.24□□□□□ -1.09
VAMP3-203ENST00000487194 CFAP53Q96M91 514 aa8.24□□□□□ -1.09
VAMP3-203ENST00000487194 NKTRP30414 1462 aaKnown RBP8.24□□□□□ -1.09
VAMP3-203ENST00000487194 TOPAZ1Q8N9V7 1692 aa8.24□□□□□ -1.09
VAMP3-203ENST00000487194 ADGRL3Q9HAR2 1447 aa8.23□□□□□ -1.09
VAMP3-203ENST00000487194 GGNBP2Q9H3C7 697 aa8.23□□□□□ -1.09
VAMP3-203ENST00000487194 SCAF1Q9H7N4 1312 aaKnown RBP8.23□□□□□ -1.09
VAMP3-203ENST00000487194 MON2Q7Z3U7 1717 aa8.23□□□□□ -1.09
VAMP3-203ENST00000487194 ANKRD26Q9UPS8 1709 aa8.23□□□□□ -1.09
VAMP3-203ENST00000487194 AKAP12Q02952 1782 aa8.22□□□□□ -1.09
VAMP3-203ENST00000487194 KIF20BQ96Q89 1820 aa8.22□□□□□ -1.09
VAMP3-203ENST00000487194 NCOA3Q9Y6Q9 1424 aa8.22□□□□□ -1.09
VAMP3-203ENST00000487194 C14orf37Q86TY3 774 aa8.22□□□□□ -1.09
VAMP3-203ENST00000487194 PROSER2Q86WR7 435 aaPredicted RBP8.22□□□□□ -1.09
VAMP3-203ENST00000487194 FMN2Q9NZ56 1722 aa8.22□□□□□ -1.09
VAMP3-203ENST00000487194 ACEP12821 1306 aa8.22□□□□□ -1.09
VAMP3-203ENST00000487194 TNNT2P45379 298 aaPredicted RBP8.21□□□□□ -1.1
VAMP3-203ENST00000487194 HSPA2P54652 639 aa8.21□□□□□ -1.1
VAMP3-203ENST00000487194 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.21□□□□□ -1.1
VAMP3-203ENST00000487194 NGDNQ8NEJ9 315 aaKnown RBP8.21□□□□□ -1.1
VAMP3-203ENST00000487194 COG3Q96JB2 828 aa8.21□□□□□ -1.1
VAMP3-203ENST00000487194 TTC21BQ7Z4L5 1316 aa8.21□□□□□ -1.1
VAMP3-203ENST00000487194 TTC21AQ8NDW8 1320 aa8.21□□□□□ -1.1
VAMP3-203ENST00000487194 USP6P35125 1406 aa8.2□□□□□ -1.1
VAMP3-203ENST00000487194 BLMP54132 1417 aaPredicted RBP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms