RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 POGKQ9P215 609 aa11.5□□□□□ -0.57
USP40-216ENST00000485943 ADGRF5Q8IZF2 1346 aa11.5□□□□□ -0.57
USP40-216ENST00000485943 DHX57Q6P158 1386 aaKnown RBP11.5□□□□□ -0.57
USP40-216ENST00000485943 LRRC7Q96NW7 1537 aa11.5□□□□□ -0.57
USP40-216ENST00000485943 RBM42Q9BTD8 480 aaKnown RBP11.49□□□□□ -0.57
USP40-216ENST00000485943 SPATA31E1Q6ZUB1 1445 aa11.49□□□□□ -0.57
USP40-216ENST00000485943 ADAMTS13Q76LX8 1427 aa11.49□□□□□ -0.57
USP40-216ENST00000485943 LAMC1P11047 1609 aa11.49□□□□□ -0.57
USP40-216ENST00000485943 ALKQ9UM73 1620 aa11.49□□□□□ -0.57
USP40-216ENST00000485943 STRCP1A6NGW2 1772 aa11.49□□□□□ -0.57
USP40-216ENST00000485943 CADPS2Q86UW7 1296 aa11.48□□□□□ -0.57
USP40-216ENST00000485943 AKT1S1Q96B36 256 aa11.48□□□□□ -0.57
USP40-216ENST00000485943 IFT172Q9UG01 1749 aa11.48□□□□□ -0.57
USP40-216ENST00000485943 NWD1Q149M9 1564 aa11.47□□□□□ -0.57
USP40-216ENST00000485943 PLCB2Q00722 1185 aa11.47□□□□□ -0.57
USP40-216ENST00000485943 MYOM2P54296 1465 aa11.46□□□□□ -0.57
USP40-216ENST00000485943 METP08581 1390 aa11.46□□□□□ -0.57
USP40-216ENST00000485943 ECM2O94769 699 aaPredicted RBP11.46□□□□□ -0.57
USP40-216ENST00000485943 TMEM132EQ6IEE7 984 aa11.46□□□□□ -0.57
USP40-216ENST00000485943 SIN3AQ96ST3 1273 aa11.46□□□□□ -0.57
USP40-216ENST00000485943 C19orf44Q9H6X5 657 aa11.46□□□□□ -0.57
USP40-216ENST00000485943 CFAP70Q5T0N1 1121 aa11.45□□□□□ -0.58
USP40-216ENST00000485943 PIK3C2GO75747 1445 aa11.44□□□□□ -0.58
USP40-216ENST00000485943 SAFB2Q14151 953 aaKnown RBP eCLIP11.44□□□□□ -0.58
USP40-216ENST00000485943 NRXN3Q9Y4C0 1643 aa11.44□□□□□ -0.58
USP40-216ENST00000485943 NCOA3Q9Y6Q9 1424 aa11.43□□□□□ -0.58
USP40-216ENST00000485943 SPDYE1Q8NFV5 336 aaPredicted RBP11.43□□□□□ -0.58
USP40-216ENST00000485943 C14orf93Q9H972 538 aaKnown RBP11.43□□□□□ -0.58
USP40-216ENST00000485943 ZBTB47Q9UFB7 747 aaPredicted RBP11.43□□□□□ -0.58
USP40-216ENST00000485943 TRAK1Q9UPV9 953 aa11.43□□□□□ -0.58
USP40-216ENST00000485943 PLEKHG5O94827 1062 aa11.42□□□□□ -0.58
USP40-216ENST00000485943 SLAIN2Q9P270 581 aa11.42□□□□□ -0.58
USP40-216ENST00000485943 YTHDC2Q9H6S0 1430 aaKnown RBP11.42□□□□□ -0.58
USP40-216ENST00000485943 XRN1Q8IZH2 1706 aaKnown RBP11.41□□□□□ -0.58
USP40-216ENST00000485943 PTCH1Q13635 1447 aa11.41□□□□□ -0.58
USP40-216ENST00000485943 PTPRUQ92729 1446 aa11.41□□□□□ -0.58
USP40-216ENST00000485943 LRPPRCP42704 1394 aaKnown RBP11.41□□□□□ -0.58
USP40-216ENST00000485943 XIRP1Q702N8 1843 aaKnown RBP11.4□□□□□ -0.58
USP40-216ENST00000485943 RGL2O15211 777 aa11.4□□□□□ -0.58
USP40-216ENST00000485943 L3MBTL2Q969R5 705 aa11.4□□□□□ -0.58
USP40-216ENST00000485943 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.4□□□□□ -0.58
USP40-216ENST00000485943 NUTM2FA1L443 756 aa11.39□□□□□ -0.59
USP40-216ENST00000485943 REM2Q8IYK8 340 aaPredicted RBP11.39□□□□□ -0.59
USP40-216ENST00000485943 PRAM1Q96QH2 718 aa11.39□□□□□ -0.59
USP40-216ENST00000485943 ADGRL3Q9HAR2 1447 aa11.39□□□□□ -0.59
USP40-216ENST00000485943 ROCK2O75116 1388 aaKnown RBP11.39□□□□□ -0.59
USP40-216ENST00000485943 EIF3AQ14152 1382 aaKnown RBP11.39□□□□□ -0.59
USP40-216ENST00000485943 DCCP43146 1447 aa11.38□□□□□ -0.59
USP40-216ENST00000485943 WAPLQ7Z5K2 1190 aa11.38□□□□□ -0.59
USP40-216ENST00000485943 ROBO2Q9HCK4 1378 aa11.38□□□□□ -0.59
USP40-216ENST00000485943 SETD1AO15047 1707 aaKnown RBP11.38□□□□□ -0.59
USP40-216ENST00000485943 KNDC1Q76NI1 1749 aa11.38□□□□□ -0.59
USP40-216ENST00000485943 ROBO1Q9Y6N7 1651 aa11.37□□□□□ -0.59
USP40-216ENST00000485943 HSPA1LP34931 641 aa11.37□□□□□ -0.59
USP40-216ENST00000485943 ESCO1Q5FWF5 840 aa11.37□□□□□ -0.59
USP40-216ENST00000485943 ABCC11Q96J66 1382 aa11.37□□□□□ -0.59
USP40-216ENST00000485943 MINK1Q8N4C8 1332 aaPredicted RBP11.36□□□□□ -0.59
USP40-216ENST00000485943 CLSPNQ9HAW4 1339 aa11.36□□□□□ -0.59
USP40-216ENST00000485943 MEX3CQ5U5Q3 659 aaKnown RBP11.36□□□□□ -0.59
USP40-216ENST00000485943 NRXN1Q9ULB1 1477 aa11.36□□□□□ -0.59
USP40-216ENST00000485943 PHLPP1O60346 1717 aa11.35□□□□□ -0.59
USP40-216ENST00000485943 NALCNQ8IZF0 1738 aa11.35□□□□□ -0.59
USP40-216ENST00000485943 HIRIP3Q9BW71 556 aaPredicted RBP11.35□□□□□ -0.59
USP40-216ENST00000485943 CARD11Q9BXL7 1154 aa11.35□□□□□ -0.59
USP40-216ENST00000485943 CIZ1Q9ULV3 898 aaPredicted RBP11.35□□□□□ -0.59
USP40-216ENST00000485943 KIAA1210Q9ULL0 1709 aa11.35□□□□□ -0.59
USP40-216ENST00000485943 FAM135BQ49AJ0 1406 aa11.35□□□□□ -0.59
USP40-216ENST00000485943 PRAG1Q86YV5 1406 aa11.35□□□□□ -0.59
USP40-216ENST00000485943 HAP1P54257 671 aaPredicted RBP11.34□□□□□ -0.59
USP40-216ENST00000485943 CREBZFQ9NS37 354 aa11.34□□□□□ -0.59
USP40-216ENST00000485943 NUBP1P53384 320 aa11.33□□□□□ -0.6
USP40-216ENST00000485943 SRPK2P78362 688 aaKnown RBP11.33□□□□□ -0.6
USP40-216ENST00000485943 SIRT1Q96EB6 747 aa11.33□□□□□ -0.6
USP40-216ENST00000485943 CLEC11AQ9Y240 323 aa11.33□□□□□ -0.6
USP40-216ENST00000485943 LMOD2Q6P5Q4 547 aa11.32□□□□□ -0.6
USP40-216ENST00000485943 TECPR2O15040 1411 aa11.32□□□□□ -0.6
USP40-216ENST00000485943 CENPJQ9HC77 1338 aaPredicted RBP11.32□□□□□ -0.6
USP40-216ENST00000485943 DLC1Q96QB1 1528 aa11.31□□□□□ -0.6
USP40-216ENST00000485943 MNX1P50219 401 aaPredicted RBP11.31□□□□□ -0.6
USP40-216ENST00000485943 BRINP3Q76B58 766 aa11.31□□□□□ -0.6
USP40-216ENST00000485943 NPHP3Q7Z494 1330 aa11.31□□□□□ -0.6
USP40-216ENST00000485943 ASXL1Q8IXJ9 1541 aa11.3□□□□□ -0.6
USP40-216ENST00000485943 DISP3Q9P2K9 1392 aa11.3□□□□□ -0.6
USP40-216ENST00000485943 PLEKHH1Q9ULM0 1364 aa11.3□□□□□ -0.6
USP40-216ENST00000485943 CDC42BPGQ6DT37 1551 aa11.3□□□□□ -0.6
USP40-216ENST00000485943 PRR29P0C7W0 189 aa11.3□□□□□ -0.6
USP40-216ENST00000485943 PSME1Q06323 249 aa11.3□□□□□ -0.6
USP40-216ENST00000485943 NBPF1Q3BBV0 1214 aa11.3□□□□□ -0.6
USP40-216ENST00000485943 NGDNQ8NEJ9 315 aaKnown RBP11.3□□□□□ -0.6
USP40-216ENST00000485943 LRRC59Q96AG4 307 aaKnown RBP11.3□□□□□ -0.6
USP40-216ENST00000485943 TIMELESSQ9UNS1 1208 aa11.3□□□□□ -0.6
USP40-216ENST00000485943 MST1RQ04912 1400 aa11.29□□□□□ -0.6
USP40-216ENST00000485943 NUTM2BA6NNL0 878 aaPredicted RBP11.29□□□□□ -0.6
USP40-216ENST00000485943 NUTM2EB1AL46 878 aaPredicted RBP11.29□□□□□ -0.6
USP40-216ENST00000485943 NUTM2AQ8IVF1 878 aaPredicted RBP11.29□□□□□ -0.6
USP40-216ENST00000485943 BBXQ8WY36 941 aaPredicted RBP11.29□□□□□ -0.6
USP40-216ENST00000485943 C1orf167Q5SNV9 1468 aa11.29□□□□□ -0.6
USP40-216ENST00000485943 ARHGEF28Q8N1W1 1705 aaKnown RBP11.29□□□□□ -0.6
USP40-216ENST00000485943 GPRASP1Q5JY77 1395 aa11.28□□□□□ -0.6
USP40-216ENST00000485943 TRPM1Q7Z4N2 1603 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms