RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 MYOM2P54296 1465 aa8.62□□□□□ -1.03
CUX1-208ENST00000485792 PIK3C2GO75747 1445 aa8.62□□□□□ -1.03
CUX1-208ENST00000485792 MPHOSPH9Q99550 1183 aa8.61□□□□□ -1.03
CUX1-208ENST00000485792 ROBO1Q9Y6N7 1651 aa8.61□□□□□ -1.03
CUX1-208ENST00000485792 DHX57Q6P158 1386 aaKnown RBP8.61□□□□□ -1.03
CUX1-208ENST00000485792 ARHGEF28Q8N1W1 1705 aaKnown RBP8.6□□□□□ -1.03
CUX1-208ENST00000485792 MNX1P50219 401 aaPredicted RBP8.6□□□□□ -1.03
CUX1-208ENST00000485792 TXNDC2Q86VQ3 553 aa8.6□□□□□ -1.03
CUX1-208ENST00000485792 RBM33Q96EV2 1170 aaKnown RBP8.6□□□□□ -1.03
CUX1-208ENST00000485792 SLC26A8Q96RN1 970 aa8.6□□□□□ -1.03
CUX1-208ENST00000485792 LAMC1P11047 1609 aa8.59□□□□□ -1.03
CUX1-208ENST00000485792 USP32Q8NFA0 1604 aa8.59□□□□□ -1.03
CUX1-208ENST00000485792 CD44P16070 742 aaKnown RBP8.59□□□□□ -1.03
CUX1-208ENST00000485792 SP7Q8TDD2 431 aaPredicted RBP8.59□□□□□ -1.03
CUX1-208ENST00000485792 COL16A1Q07092 1604 aaPredicted RBP8.58□□□□□ -1.04
CUX1-208ENST00000485792 ADGRF5Q8IZF2 1346 aa8.58□□□□□ -1.04
CUX1-208ENST00000485792 FBXO41Q8TF61 875 aa8.58□□□□□ -1.04
CUX1-208ENST00000485792 TMEM94Q12767 1356 aa8.58□□□□□ -1.04
CUX1-208ENST00000485792 NHSL1Q5SYE7 1610 aa8.58□□□□□ -1.04
CUX1-208ENST00000485792 CCDC144AA2RUR9 1427 aa8.57□□□□□ -1.04
CUX1-208ENST00000485792 TRIM52Q96A61 297 aa8.57□□□□□ -1.04
CUX1-208ENST00000485792 RGPD8O14715 1765 aaPredicted RBP8.56□□□□□ -1.04
CUX1-208ENST00000485792 TRPM1Q7Z4N2 1603 aa8.56□□□□□ -1.04
CUX1-208ENST00000485792 KCNA6P17658 529 aa8.56□□□□□ -1.04
CUX1-208ENST00000485792 FMN2Q9NZ56 1722 aa8.56□□□□□ -1.04
CUX1-208ENST00000485792 PIK3R4Q99570 1358 aa8.56□□□□□ -1.04
CUX1-208ENST00000485792 ROBO2Q9HCK4 1378 aa8.56□□□□□ -1.04
CUX1-208ENST00000485792 TECPR2O15040 1411 aa8.55□□□□□ -1.04
CUX1-208ENST00000485792 PTCH1Q13635 1447 aa8.55□□□□□ -1.04
CUX1-208ENST00000485792 EVX2Q03828 476 aa8.55□□□□□ -1.04
CUX1-208ENST00000485792 TBX22Q9Y458 520 aa8.55□□□□□ -1.04
CUX1-208ENST00000485792 EID1Q9Y6B2 187 aa8.55□□□□□ -1.04
CUX1-208ENST00000485792 PLEKHH1Q9ULM0 1364 aa8.55□□□□□ -1.04
CUX1-208ENST00000485792 CDC42BPGQ6DT37 1551 aa8.55□□□□□ -1.04
CUX1-208ENST00000485792 KIAA1210Q9ULL0 1709 aa8.54□□□□□ -1.04
CUX1-208ENST00000485792 ADGRB2O60241 1585 aa8.54□□□□□ -1.04
CUX1-208ENST00000485792 PAK3O75914 559 aaPredicted RBP8.54□□□□□ -1.04
CUX1-208ENST00000485792 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.54□□□□□ -1.04
CUX1-208ENST00000485792 TOPAZ1Q8N9V7 1692 aa8.53□□□□□ -1.04
CUX1-208ENST00000485792 MED1Q15648 1581 aaPredicted RBP8.53□□□□□ -1.04
CUX1-208ENST00000485792 CHGAP10645 457 aaKnown RBP8.53□□□□□ -1.04
CUX1-208ENST00000485792 HDGFP51858 240 aaKnown RBP8.53□□□□□ -1.04
CUX1-208ENST00000485792 AHDC1Q5TGY3 1603 aaPredicted RBP8.53□□□□□ -1.04
CUX1-208ENST00000485792 MST1RQ04912 1400 aa8.53□□□□□ -1.04
CUX1-208ENST00000485792 NCOA3Q9Y6Q9 1424 aa8.53□□□□□ -1.04
CUX1-208ENST00000485792 RPGRIP1LQ68CZ1 1315 aa8.53□□□□□ -1.04
CUX1-208ENST00000485792 PHLPP1O60346 1717 aa8.52□□□□□ -1.05
CUX1-208ENST00000485792 NUBP1P53384 320 aa8.52□□□□□ -1.05
CUX1-208ENST00000485792 ADGRL3Q9HAR2 1447 aa8.52□□□□□ -1.05
CUX1-208ENST00000485792 ABCA3Q99758 1704 aa8.51□□□□□ -1.05
CUX1-208ENST00000485792 CRYBG1Q9Y4K1 1723 aa8.51□□□□□ -1.05
CUX1-208ENST00000485792 LRP6O75581 1613 aa8.51□□□□□ -1.05
CUX1-208ENST00000485792 DLC1Q96QB1 1528 aa8.5□□□□□ -1.05
CUX1-208ENST00000485792 ZRANB1Q9UGI0 708 aa8.5□□□□□ -1.05
CUX1-208ENST00000485792 SHPRHQ149N8 1683 aa8.49□□□□□ -1.05
CUX1-208ENST00000485792 TRPM3Q9HCF6 1732 aaPredicted RBP8.49□□□□□ -1.05
CUX1-208ENST00000485792 DCCP43146 1447 aa8.48□□□□□ -1.05
CUX1-208ENST00000485792 YTHDC2Q9H6S0 1430 aaKnown RBP8.48□□□□□ -1.05
CUX1-208ENST00000485792 VGFO15240 615 aaPredicted RBP8.48□□□□□ -1.05
CUX1-208ENST00000485792 QRICH2Q9H0J4 1663 aa8.48□□□□□ -1.05
CUX1-208ENST00000485792 MARF1Q9Y4F3 1742 aaKnown RBP8.48□□□□□ -1.05
CUX1-208ENST00000485792 LRPPRCP42704 1394 aaKnown RBP8.48□□□□□ -1.05
CUX1-208ENST00000485792 HSPA1LP34931 641 aa8.47□□□□□ -1.05
CUX1-208ENST00000485792 TULP4Q9NRJ4 1543 aa8.47□□□□□ -1.05
CUX1-208ENST00000485792 UBAP1LF5GYI3 381 aa8.46□□□□□ -1.06
CUX1-208ENST00000485792 PPP1R15AO75807 674 aaPredicted RBP8.46□□□□□ -1.06
CUX1-208ENST00000485792 RGL3Q3MIN7 710 aa8.46□□□□□ -1.06
CUX1-208ENST00000485792 ZNF326Q5BKZ1 582 aaKnown RBP8.46□□□□□ -1.06
CUX1-208ENST00000485792 TMEM132EQ6IEE7 984 aa8.46□□□□□ -1.06
CUX1-208ENST00000485792 RASEFQ8IZ41 740 aa8.46□□□□□ -1.06
CUX1-208ENST00000485792 SIN3AQ96ST3 1273 aa8.46□□□□□ -1.06
CUX1-208ENST00000485792 AMOTL2Q9Y2J4 779 aa8.46□□□□□ -1.06
CUX1-208ENST00000485792 COL22A1Q8NFW1 1626 aaPredicted RBP8.46□□□□□ -1.06
CUX1-208ENST00000485792 FAM135BQ49AJ0 1406 aa8.46□□□□□ -1.06
CUX1-208ENST00000485792 C1orf167Q5SNV9 1468 aa8.45□□□□□ -1.06
CUX1-208ENST00000485792 PXDNQ92626 1479 aa8.45□□□□□ -1.06
CUX1-208ENST00000485792 CFAP70Q5T0N1 1121 aa8.45□□□□□ -1.06
CUX1-208ENST00000485792 ZNF579Q8NAF0 562 aaKnown RBP8.45□□□□□ -1.06
CUX1-208ENST00000485792 FAM212AQ96EL1 285 aa8.45□□□□□ -1.06
CUX1-208ENST00000485792 STAC3Q96MF2 364 aa8.45□□□□□ -1.06
CUX1-208ENST00000485792 TSPYL2Q9H2G4 693 aaPredicted RBP8.45□□□□□ -1.06
CUX1-208ENST00000485792 CIZ1Q9ULV3 898 aaPredicted RBP8.45□□□□□ -1.06
CUX1-208ENST00000485792 ALS2Q96Q42 1657 aa8.44□□□□□ -1.06
CUX1-208ENST00000485792 GSE1Q14687 1217 aa8.44□□□□□ -1.06
CUX1-208ENST00000485792 ATP7BP35670 1465 aa8.44□□□□□ -1.06
CUX1-208ENST00000485792 NRKQ7Z2Y5 1582 aa8.44□□□□□ -1.06
CUX1-208ENST00000485792 CLCN6P51797 869 aa8.43□□□□□ -1.06
CUX1-208ENST00000485792 PIP4K2BP78356 416 aa8.43□□□□□ -1.06
CUX1-208ENST00000485792 DDX17Q92841 729 aaKnown RBP8.43□□□□□ -1.06
CUX1-208ENST00000485792 C14orf93Q9H972 538 aaKnown RBP8.43□□□□□ -1.06
CUX1-208ENST00000485792 ABCC11Q96J66 1382 aa8.43□□□□□ -1.06
CUX1-208ENST00000485792 KIF1AQ12756 1690 aa8.43□□□□□ -1.06
CUX1-208ENST00000485792 TOM1O60784 492 aa8.42□□□□□ -1.06
CUX1-208ENST00000485792 GABBR2O75899 941 aa8.42□□□□□ -1.06
CUX1-208ENST00000485792 TRIM26Q12899 539 aaPredicted RBP8.42□□□□□ -1.06
CUX1-208ENST00000485792 DCAF8Q5TAQ9 597 aa8.42□□□□□ -1.06
CUX1-208ENST00000485792 WAPLQ7Z5K2 1190 aa8.42□□□□□ -1.06
CUX1-208ENST00000485792 PROSER2Q86WR7 435 aaPredicted RBP8.42□□□□□ -1.06
CUX1-208ENST00000485792 SIRT1Q96EB6 747 aa8.42□□□□□ -1.06
CUX1-208ENST00000485792 MSH6P52701 1360 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms