RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 RNF166Q96A37 237 aaPredicted RBP9.12□□□□□ -0.95
PTPN4-210ENST00000485247 TK2O00142 265 aa9.11□□□□□ -0.95
PTPN4-210ENST00000485247 PTGER2P43116 358 aa9.11□□□□□ -0.95
PTPN4-210ENST00000485247 DDX12PQ92771 950 aa9.11□□□□□ -0.95
PTPN4-210ENST00000485247 ZNF518AQ6AHZ1 1483 aa9.1□□□□□ -0.95
PTPN4-210ENST00000485247 HRO43593 1189 aa9.1□□□□□ -0.95
PTPN4-210ENST00000485247 PTPREP23469 700 aa9.1□□□□□ -0.95
PTPN4-210ENST00000485247 TYW1BQ6NUM6 668 aa9.1□□□□□ -0.95
PTPN4-210ENST00000485247 DIP2CQ9Y2E4 1556 aa9.1□□□□□ -0.95
PTPN4-210ENST00000485247 RGS17Q9UGC6 210 aaPredicted RBP9.09□□□□□ -0.95
PTPN4-210ENST00000485247 NPATQ14207 1427 aa9.08□□□□□ -0.96
PTPN4-210ENST00000485247 CNTLNQ9NXG0 1405 aa9.08□□□□□ -0.96
PTPN4-210ENST00000485247 SPDYE16A6NNV3 312 aaPredicted RBP9.08□□□□□ -0.96
PTPN4-210ENST00000485247 KCNV2Q8TDN2 545 aa9.08□□□□□ -0.96
PTPN4-210ENST00000485247 FBXW7Q969H0 707 aa9.08□□□□□ -0.96
PTPN4-210ENST00000485247 VPS9D1Q9Y2B5 631 aa9.08□□□□□ -0.96
PTPN4-210ENST00000485247 ZMYM3Q14202 1370 aa9.08□□□□□ -0.96
PTPN4-210ENST00000485247 KDM5CP41229 1560 aa9.07□□□□□ -0.96
PTPN4-210ENST00000485247 AGLP35573 1532 aa9.07□□□□□ -0.96
PTPN4-210ENST00000485247 CDK13Q14004 1512 aaKnown RBP9.07□□□□□ -0.96
PTPN4-210ENST00000485247 COL9A1P20849 921 aa9.07□□□□□ -0.96
PTPN4-210ENST00000485247 ZBED2Q9BTP6 218 aa9.07□□□□□ -0.96
PTPN4-210ENST00000485247 PLA2R1Q13018 1463 aa9.07□□□□□ -0.96
PTPN4-210ENST00000485247 TCOF1Q13428 1488 aaKnown RBP9.07□□□□□ -0.96
PTPN4-210ENST00000485247 REREQ9P2R6 1566 aa9.07□□□□□ -0.96
PTPN4-210ENST00000485247 ABCA6Q8N139 1617 aa9.06□□□□□ -0.96
PTPN4-210ENST00000485247 EPAS1Q99814 870 aa9.06□□□□□ -0.96
PTPN4-210ENST00000485247 SLC4A5Q9BY07 1137 aa9.06□□□□□ -0.96
PTPN4-210ENST00000485247 PRIM1P49642 420 aaKnown RBP9.05□□□□□ -0.96
PTPN4-210ENST00000485247 NBR1Q14596 966 aa9.05□□□□□ -0.96
PTPN4-210ENST00000485247 MYO5CQ9NQX4 1742 aa9.05□□□□□ -0.96
PTPN4-210ENST00000485247 ARHGAP5Q13017 1502 aa9.05□□□□□ -0.96
PTPN4-210ENST00000485247 MLH3Q9UHC1 1453 aa9.04□□□□□ -0.96
PTPN4-210ENST00000485247 PPP1R3GB7ZBB8 358 aa9.04□□□□□ -0.96
PTPN4-210ENST00000485247 RBM33Q96EV2 1170 aaKnown RBP9.04□□□□□ -0.96
PTPN4-210ENST00000485247 ATP1B4Q9UN42 357 aaPredicted RBP9.04□□□□□ -0.96
PTPN4-210ENST00000485247 SUPT6HQ7KZ85 1726 aaKnown RBP9.04□□□□□ -0.96
PTPN4-210ENST00000485247 CPS1P31327 1500 aa9.04□□□□□ -0.96
PTPN4-210ENST00000485247 CEP170BQ9Y4F5 1589 aaPredicted RBP9.03□□□□□ -0.96
PTPN4-210ENST00000485247 SHANK2Q9UPX8 1470 aa9.03□□□□□ -0.96
PTPN4-210ENST00000485247 EN1Q05925 392 aaPredicted RBP9.03□□□□□ -0.96
PTPN4-210ENST00000485247 C6orf132Q5T0Z8 1188 aa9.03□□□□□ -0.96
PTPN4-210ENST00000485247 POTEAQ6S8J7 498 aa9.03□□□□□ -0.96
PTPN4-210ENST00000485247 PTPRKQ15262 1439 aa9.03□□□□□ -0.96
PTPN4-210ENST00000485247 MYO3AQ8NEV4 1616 aa9.02□□□□□ -0.96
PTPN4-210ENST00000485247 BHMG1C9JSJ3 638 aaPredicted RBP9.02□□□□□ -0.97
PTPN4-210ENST00000485247 TSR1Q2NL82 804 aaKnown RBP9.02□□□□□ -0.97
PTPN4-210ENST00000485247 PROX2Q3B8N5 592 aa9.02□□□□□ -0.97
PTPN4-210ENST00000485247 ALKQ9UM73 1620 aa9.02□□□□□ -0.97
PTPN4-210ENST00000485247 ZNF142P52746 1687 aaPredicted RBP9.01□□□□□ -0.97
PTPN4-210ENST00000485247 GRXCR2A6NFK2 248 aa9.01□□□□□ -0.97
PTPN4-210ENST00000485247 ARHGEF1Q92888 912 aaKnown RBP9.01□□□□□ -0.97
PTPN4-210ENST00000485247 KIF14Q15058 1648 aa9.01□□□□□ -0.97
PTPN4-210ENST00000485247 MROH2AA6NES4 1674 aa9□□□□□ -0.97
PTPN4-210ENST00000485247 HAP1P54257 671 aaPredicted RBP9□□□□□ -0.97
PTPN4-210ENST00000485247 CDK11AQ9UQ88 783 aaPredicted RBP9□□□□□ -0.97
PTPN4-210ENST00000485247 CLTCQ00610 1675 aaKnown RBP8.98□□□□□ -0.97
PTPN4-210ENST00000485247 MAP3K7O43318 606 aa8.98□□□□□ -0.97
PTPN4-210ENST00000485247 OSBPP22059 807 aa8.98□□□□□ -0.97
PTPN4-210ENST00000485247 GGT6Q6P531 493 aa8.98□□□□□ -0.97
PTPN4-210ENST00000485247 A2ML1A8K2U0 1454 aa8.97□□□□□ -0.97
PTPN4-210ENST00000485247 KIDINS220Q9ULH0 1771 aa8.97□□□□□ -0.97
PTPN4-210ENST00000485247 DNMT1P26358 1616 aaKnown RBP8.97□□□□□ -0.97
PTPN4-210ENST00000485247 VWDEQ8N2E2 1590 aa8.96□□□□□ -0.97
PTPN4-210ENST00000485247 NEURL4Q96JN8 1562 aa8.96□□□□□ -0.97
PTPN4-210ENST00000485247 MLLT3P42568 568 aaPredicted RBP8.96□□□□□ -0.98
PTPN4-210ENST00000485247 ANKLE2Q86XL3 938 aa8.96□□□□□ -0.98
PTPN4-210ENST00000485247 CDHR5Q9HBB8 845 aa8.96□□□□□ -0.98
PTPN4-210ENST00000485247 KDM2AQ9Y2K7 1162 aa8.96□□□□□ -0.98
PTPN4-210ENST00000485247 TROQ12816 1431 aaPredicted RBP8.96□□□□□ -0.98
PTPN4-210ENST00000485247 ABCC1P33527 1531 aa8.95□□□□□ -0.98
PTPN4-210ENST00000485247 CDC42BPBQ9Y5S2 1711 aa8.95□□□□□ -0.98
PTPN4-210ENST00000485247 KCTD12Q96CX2 325 aaKnown RBP8.95□□□□□ -0.98
PTPN4-210ENST00000485247 SETD1AO15047 1707 aaKnown RBP8.94□□□□□ -0.98
PTPN4-210ENST00000485247 POLR1AO95602 1720 aaPredicted RBP8.94□□□□□ -0.98
PTPN4-210ENST00000485247 STAC3Q96MF2 364 aa8.94□□□□□ -0.98
PTPN4-210ENST00000485247 RABGEF1Q9UJ41 708 aa8.94□□□□□ -0.98
PTPN4-210ENST00000485247 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.94□□□□□ -0.98
PTPN4-210ENST00000485247 CLIP1P30622 1438 aa8.94□□□□□ -0.98
PTPN4-210ENST00000485247 ITSN2Q9NZM3 1697 aa8.94□□□□□ -0.98
PTPN4-210ENST00000485247 TRIM6-TRIM34B2RNG4 842 aa8.93□□□□□ -0.98
PTPN4-210ENST00000485247 MRPL50Q8N5N7 158 aaKnown RBP8.93□□□□□ -0.98
PTPN4-210ENST00000485247 ZNF777Q9ULD5 760 aaPredicted RBP8.93□□□□□ -0.98
PTPN4-210ENST00000485247 SPAG9O60271 1321 aaKnown RBP8.93□□□□□ -0.98
PTPN4-210ENST00000485247 LRRC7Q96NW7 1537 aa8.93□□□□□ -0.98
PTPN4-210ENST00000485247 NPHP4O75161 1426 aaPredicted RBP8.92□□□□□ -0.98
PTPN4-210ENST00000485247 FBXO31Q5XUX0 539 aaPredicted RBP8.92□□□□□ -0.98
PTPN4-210ENST00000485247 NBPF3Q9H094 633 aa8.92□□□□□ -0.98
PTPN4-210ENST00000485247 KIAA1468Q9P260 1216 aa8.92□□□□□ -0.98
PTPN4-210ENST00000485247 TSKSQ9UJT2 592 aa8.92□□□□□ -0.98
PTPN4-210ENST00000485247 RNF17Q9BXT8 1623 aaKnown RBP8.91□□□□□ -0.98
PTPN4-210ENST00000485247 SAMD9LQ8IVG5 1584 aa8.91□□□□□ -0.98
PTPN4-210ENST00000485247 ONECUT3O60422 494 aaPredicted RBP8.91□□□□□ -0.98
PTPN4-210ENST00000485247 HNRNPMP52272 730 aaKnown RBP eCLIP8.91□□□□□ -0.981e-9■■■■■ 28.9
PTPN4-210ENST00000485247 THEMISQ8N1K5 641 aaPredicted RBP8.91□□□□□ -0.98
PTPN4-210ENST00000485247 FAM198AQ9UFP1 575 aa8.91□□□□□ -0.98
PTPN4-210ENST00000485247 A2MP01023 1474 aa8.9□□□□□ -0.98
PTPN4-210ENST00000485247 TNRQ92752 1358 aa8.9□□□□□ -0.98
PTPN4-210ENST00000485247 SEMA3EO15041 775 aa8.9□□□□□ -0.98
PTPN4-210ENST00000485247 PREX2Q70Z35 1606 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms