RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 ZNF142P52746 1687 aaPredicted RBP35.63■■■■□ 3.29
SHOX2-204ENST00000483851 FAM135BQ49AJ0 1406 aa35.62■■■■□ 3.29
SHOX2-204ENST00000483851 MED14O60244 1454 aa35.62■■■■□ 3.29
SHOX2-204ENST00000483851 AMER1Q5JTC6 1135 aaPredicted RBP35.61■■■■□ 3.29
SHOX2-204ENST00000483851 NLRP13Q86W25 1043 aa35.6■■■■□ 3.29
SHOX2-204ENST00000483851 CPS1P31327 1500 aa35.6■■■■□ 3.29
SHOX2-204ENST00000483851 PLPPR3Q6T4P5 718 aa35.59■■■■□ 3.29
SHOX2-204ENST00000483851 BCANQ96GW7 911 aa35.58■■■■□ 3.29
SHOX2-204ENST00000483851 DIP2AQ14689 1571 aa35.58■■■■□ 3.29
SHOX2-204ENST00000483851 ATAD2Q6PL18 1390 aa35.57■■■■□ 3.28
SHOX2-204ENST00000483851 CNGB1Q14028 1251 aaPredicted RBP35.56■■■■□ 3.28
SHOX2-204ENST00000483851 TMC1Q8TDI8 760 aa35.56■■■■□ 3.28
SHOX2-204ENST00000483851 CC2D1BQ5T0F9 858 aaKnown RBP35.56■■■■□ 3.28
SHOX2-204ENST00000483851 SAFB2Q14151 953 aaKnown RBP eCLIP35.54■■■■□ 3.28
SHOX2-204ENST00000483851 TBX22Q9Y458 520 aa35.52■■■■□ 3.28
SHOX2-204ENST00000483851 MINK1Q8N4C8 1332 aaPredicted RBP35.52■■■■□ 3.28
SHOX2-204ENST00000483851 USP32Q8NFA0 1604 aa35.51■■■■□ 3.28
SHOX2-204ENST00000483851 ANKRD36BQ8N2N9 1353 aa35.5■■■■□ 3.27
SHOX2-204ENST00000483851 CARD14Q9BXL6 1004 aa35.5■■■■□ 3.27
SHOX2-204ENST00000483851 SLC12A5Q9H2X9 1139 aa35.5■■■■□ 3.27
SHOX2-204ENST00000483851 FAM9BQ8IZU0 186 aa35.49■■■■□ 3.27
SHOX2-204ENST00000483851 PNISRQ8TF01 805 aaKnown RBP35.49■■■■□ 3.27
SHOX2-204ENST00000483851 SRPK2P78362 688 aaKnown RBP35.48■■■■□ 3.27
SHOX2-204ENST00000483851 CABP2Q9NPB3 220 aa35.48■■■■□ 3.27
SHOX2-204ENST00000483851 PLEKHH1Q9ULM0 1364 aa35.45■■■■□ 3.27
SHOX2-204ENST00000483851 WAPLQ7Z5K2 1190 aa35.45■■■■□ 3.27
SHOX2-204ENST00000483851 HNRNPUQ00839 825 aaKnown RBP eCLIP35.44■■■■□ 3.26
SHOX2-204ENST00000483851 CDK19Q9BWU1 502 aa35.43■■■■□ 3.26
SHOX2-204ENST00000483851 NSD3Q9BZ95 1437 aa35.42■■■■□ 3.26
SHOX2-204ENST00000483851 PIK3R4Q99570 1358 aa35.41■■■■□ 3.26
SHOX2-204ENST00000483851 NSD2O96028 1365 aa35.37■■■■□ 3.25
SHOX2-204ENST00000483851 INSRP06213 1382 aa35.37■■■■□ 3.25
SHOX2-204ENST00000483851 ANKLE2Q86XL3 938 aa35.37■■■■□ 3.25
SHOX2-204ENST00000483851 ADGRB2O60241 1585 aa35.37■■■■□ 3.25
SHOX2-204ENST00000483851 PPP2R1AP30153 589 aa35.37■■■■□ 3.25
SHOX2-204ENST00000483851 SLC26A8Q96RN1 970 aa35.37■■■■□ 3.25
SHOX2-204ENST00000483851 TERF2IPQ9NYB0 399 aa35.37■■■■□ 3.25
SHOX2-204ENST00000483851 PTCH1Q13635 1447 aa35.36■■■■□ 3.25
SHOX2-204ENST00000483851 ROBO2Q9HCK4 1378 aa35.36■■■■□ 3.25
SHOX2-204ENST00000483851 WASLO00401 505 aaPredicted RBP35.36■■■■□ 3.25
SHOX2-204ENST00000483851 CGNL1Q0VF96 1302 aa35.35■■■■□ 3.25
SHOX2-204ENST00000483851 PTPRUQ92729 1446 aa35.35■■■■□ 3.25
SHOX2-204ENST00000483851 SUPT16HQ9Y5B9 1047 aaKnown RBP35.33■■■■□ 3.25
SHOX2-204ENST00000483851 ATP7BP35670 1465 aa35.31■■■■□ 3.24
SHOX2-204ENST00000483851 ZBED9Q6R2W3 1325 aa35.31■■■■□ 3.24
SHOX2-204ENST00000483851 A0A1W2PP64 1363 aa35.3■■■■□ 3.24
SHOX2-204ENST00000483851 XRN1Q8IZH2 1706 aaKnown RBP35.3■■■■□ 3.24
SHOX2-204ENST00000483851 AMOTL2Q9Y2J4 779 aa35.29■■■■□ 3.24
SHOX2-204ENST00000483851 CD163L1Q9NR16 1453 aa35.29■■■■□ 3.24
SHOX2-204ENST00000483851 HDGFL2Q7Z4V5 671 aaPredicted RBP35.27■■■■□ 3.24
SHOX2-204ENST00000483851 SIPA1L2Q9P2F8 1722 aaPredicted RBP35.25■■■■□ 3.23
SHOX2-204ENST00000483851 PELP1Q8IZL8 1130 aaKnown RBP35.24■■■■□ 3.23
SHOX2-204ENST00000483851 CABP1Q9NZU7 370 aa35.22■■■■□ 3.23
SHOX2-204ENST00000483851 MORC1Q86VD1 984 aa35.21■■■■□ 3.23
SHOX2-204ENST00000483851 CCDC61Q9Y6R9 512 aa35.2■■■■□ 3.22
SHOX2-204ENST00000483851 NUDT16Q96DE0 195 aaKnown RBP35.18■■■■□ 3.22
SHOX2-204ENST00000483851 PPIP5K1Q6PFW1 1433 aa35.17■■■■□ 3.22
SHOX2-204ENST00000483851 CHD2O14647 1828 aaKnown RBP35.17■■■■□ 3.22
SHOX2-204ENST00000483851 ANKRD26Q9UPS8 1709 aa35.17■■■■□ 3.22
SHOX2-204ENST00000483851 CPSF1Q10570 1443 aaKnown RBP35.16■■■■□ 3.22
SHOX2-204ENST00000483851 NPHP4O75161 1426 aaPredicted RBP35.15■■■■□ 3.22
SHOX2-204ENST00000483851 CDC42BPGQ6DT37 1551 aa35.14■■■■□ 3.22
SHOX2-204ENST00000483851 POLR3AO14802 1390 aaPredicted RBP35.14■■■■□ 3.22
SHOX2-204ENST00000483851 BLMP54132 1417 aaPredicted RBP35.13■■■■□ 3.21
SHOX2-204ENST00000483851 TOPAZ1Q8N9V7 1692 aa35.11■■■■□ 3.21
SHOX2-204ENST00000483851 KIF20BQ96Q89 1820 aa35.1■■■■□ 3.21
SHOX2-204ENST00000483851 EDC4Q6P2E9 1401 aaKnown RBP35.09■■■■□ 3.21
SHOX2-204ENST00000483851 AKAP12Q02952 1782 aa35.08■■■■□ 3.21
SHOX2-204ENST00000483851 KCNA6P17658 529 aa35.07■■■■□ 3.21
SHOX2-204ENST00000483851 WDR43Q15061 677 aaKnown RBP eCLIP35.07■■■■□ 3.21
SHOX2-204ENST00000483851 ZNF692Q9BU19 519 aaPredicted RBP35.07■■■■□ 3.21
SHOX2-204ENST00000483851 MON2Q7Z3U7 1717 aa35.07■■■■□ 3.2
SHOX2-204ENST00000483851 FYB1O15117 783 aa35.07■■■■□ 3.2
SHOX2-204ENST00000483851 ITSN1Q15811 1721 aa35.06■■■■□ 3.2
SHOX2-204ENST00000483851 PRR36Q9H6K5 1346 aa35.06■■■■□ 3.2
SHOX2-204ENST00000483851 PLEKHG3A1L390 1219 aa35.03■■■■□ 3.2
SHOX2-204ENST00000483851 ADAMTS8Q9UP79 889 aa35.01■■■■□ 3.19
SHOX2-204ENST00000483851 ANKARQ7Z5J8 1434 aa35■■■■□ 3.19
SHOX2-204ENST00000483851 GGNBP2Q9H3C7 697 aa34.98■■■■□ 3.19
SHOX2-204ENST00000483851 CFAP53Q96M91 514 aa34.97■■■■□ 3.19
SHOX2-204ENST00000483851 NWD1Q149M9 1564 aa34.97■■■■□ 3.19
SHOX2-204ENST00000483851 MTHFSP49914 203 aa34.94■■■■□ 3.18
SHOX2-204ENST00000483851 FMN2Q9NZ56 1722 aa34.94■■■■□ 3.18
SHOX2-204ENST00000483851 NCKAP5LQ9HCH0 1330 aa34.94■■■■□ 3.18
SHOX2-204ENST00000483851 TNNT2P45379 298 aaPredicted RBP34.93■■■■□ 3.18
SHOX2-204ENST00000483851 SMG6Q86US8 1419 aaKnown RBP34.92■■■■□ 3.18
SHOX2-204ENST00000483851 PDE3BQ13370 1112 aa34.92■■■■□ 3.18
SHOX2-204ENST00000483851 SHPRHQ149N8 1683 aa34.91■■■■□ 3.18
SHOX2-204ENST00000483851 NRKQ7Z2Y5 1582 aa34.89■■■■□ 3.18
SHOX2-204ENST00000483851 FKBP8Q14318 412 aa34.89■■■■□ 3.18
SHOX2-204ENST00000483851 NALCNQ8IZF0 1738 aa34.89■■■■□ 3.18
SHOX2-204ENST00000483851 ACEP12821 1306 aa34.88■■■■□ 3.17
SHOX2-204ENST00000483851 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.88■■■■□ 3.17
SHOX2-204ENST00000483851 NKTRP30414 1462 aaKnown RBP34.87■■■■□ 3.17
SHOX2-204ENST00000483851 USP6P35125 1406 aa34.86■■■■□ 3.17
SHOX2-204ENST00000483851 ADGRL3Q9HAR2 1447 aa34.86■■■■□ 3.17
SHOX2-204ENST00000483851 KDM4FA0A1W2PPD8 638 aa34.86■■■■□ 3.17
SHOX2-204ENST00000483851 NGEFQ8N5V2 710 aa34.86■■■■□ 3.17
SHOX2-204ENST00000483851 NUDCQ9Y266 331 aa34.84■■■■□ 3.17
SHOX2-204ENST00000483851 RGPD8O14715 1765 aaPredicted RBP34.82■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms