RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 NR1I2O75469 434 aa11.79□□□□□ -0.52
SNX13-208ENST00000482558 CFHP08603 1231 aa11.79□□□□□ -0.52
SNX13-208ENST00000482558 RCCD1A6NED2 376 aa11.78□□□□□ -0.52
SNX13-208ENST00000482558 MLLT3P42568 568 aaPredicted RBP11.78□□□□□ -0.52
SNX13-208ENST00000482558 TESPA1A2RU30 521 aaPredicted RBP11.77□□□□□ -0.53
SNX13-208ENST00000482558 PPEF1O14829 653 aaPredicted RBP11.77□□□□□ -0.53
SNX13-208ENST00000482558 UBTFP17480 764 aaKnown RBP11.76□□□□□ -0.53
SNX13-208ENST00000482558 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.76□□□□□ -0.53
SNX13-208ENST00000482558 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.75□□□□□ -0.53
SNX13-208ENST00000482558 FAM187AA6NFU0 413 aa11.75□□□□□ -0.53
SNX13-208ENST00000482558 CADPSQ9ULU8 1353 aa11.75□□□□□ -0.53
SNX13-208ENST00000482558 SLC6A16Q9GZN6 736 aa11.74□□□□□ -0.53
SNX13-208ENST00000482558 SLC10A3P09131 477 aa11.73□□□□□ -0.53
SNX13-208ENST00000482558 ERICH3Q5RHP9 1530 aa11.73□□□□□ -0.53
SNX13-208ENST00000482558 SMYD5Q6GMV2 418 aa11.73□□□□□ -0.53
SNX13-208ENST00000482558 RUSC2Q8N2Y8 1516 aa11.73□□□□□ -0.53
SNX13-208ENST00000482558 POTECB2RU33 542 aa11.72□□□□□ -0.53
SNX13-208ENST00000482558 TNFRSF10AO00220 468 aa11.72□□□□□ -0.53
SNX13-208ENST00000482558 CC2D2AQ9P2K1 1620 aa11.71□□□□□ -0.53
SNX13-208ENST00000482558 KIF27Q86VH2 1401 aa11.7□□□□□ -0.54
SNX13-208ENST00000482558 NUTM2FA1L443 756 aa11.69□□□□□ -0.54
SNX13-208ENST00000482558 PLA2G2CQ5R387 149 aa11.69□□□□□ -0.54
SNX13-208ENST00000482558 SCUBE3Q8IX30 993 aa11.69□□□□□ -0.54
SNX13-208ENST00000482558 AAASQ9NRG9 546 aa11.69□□□□□ -0.54
SNX13-208ENST00000482558 CUX1P39880 1505 aa11.69□□□□□ -0.54
SNX13-208ENST00000482558 FCHSD2O94868 740 aa11.68□□□□□ -0.54
SNX13-208ENST00000482558 OATP04181 439 aa11.68□□□□□ -0.54
SNX13-208ENST00000482558 RSPH4AQ5TD94 716 aa11.68□□□□□ -0.54
SNX13-208ENST00000482558 FAM161AQ3B820 660 aa11.67□□□□□ -0.54
SNX13-208ENST00000482558 TREML4Q6UXN2 200 aa11.67□□□□□ -0.54
SNX13-208ENST00000482558 CRIPAKQ8N1N5 446 aa11.67□□□□□ -0.54
SNX13-208ENST00000482558 PRXQ9BXM0 1461 aa11.66□□□□□ -0.54
SNX13-208ENST00000482558 PXYLP1Q8TE99 480 aa11.66□□□□□ -0.54
SNX13-208ENST00000482558 PKD2L1Q9P0L9 805 aa11.66□□□□□ -0.54
SNX13-208ENST00000482558 CLIP1P30622 1438 aa11.66□□□□□ -0.54
SNX13-208ENST00000482558 RPIAP49247 311 aa11.65□□□□□ -0.54
SNX13-208ENST00000482558 LCE2AQ5TA79 106 aaPredicted RBP11.65□□□□□ -0.54
SNX13-208ENST00000482558 SPSB2Q99619 263 aa11.65□□□□□ -0.54
SNX13-208ENST00000482558 ST8SIA5O15466 376 aa11.64□□□□□ -0.55
SNX13-208ENST00000482558 RAPGEF2Q9Y4G8 1499 aa11.62□□□□□ -0.55
SNX13-208ENST00000482558 VPS8Q8N3P4 1428 aa11.61□□□□□ -0.55
SNX13-208ENST00000482558 AVPP01185 164 aa11.61□□□□□ -0.55
SNX13-208ENST00000482558 BRPF1P55201 1214 aaPredicted RBP11.6□□□□□ -0.55
SNX13-208ENST00000482558 ZC3H15Q8WU90 426 aaKnown RBP11.6□□□□□ -0.55
SNX13-208ENST00000482558 CD2BP2O95400 341 aaKnown RBP11.59□□□□□ -0.55
SNX13-208ENST00000482558 FOXC1Q12948 553 aa11.59□□□□□ -0.55
SNX13-208ENST00000482558 PUS10Q3MIT2 529 aaKnown RBP11.59□□□□□ -0.55
SNX13-208ENST00000482558 METTL3Q86U44 580 aaKnown RBP11.59□□□□□ -0.55
SNX13-208ENST00000482558 TOR4AQ9NXH8 423 aa11.59□□□□□ -0.55
SNX13-208ENST00000482558 LAMC3Q9Y6N6 1575 aa11.58□□□□□ -0.55
SNX13-208ENST00000482558 HIC1Q14526 733 aa11.58□□□□□ -0.56
SNX13-208ENST00000482558 FANCD2Q9BXW9 1451 aa11.57□□□□□ -0.56
SNX13-208ENST00000482558 CTC1Q2NKJ3 1217 aa11.57□□□□□ -0.56
SNX13-208ENST00000482558 MORN1Q5T089 497 aa11.56□□□□□ -0.56
SNX13-208ENST00000482558 DNMBPQ6XZF7 1577 aa11.56□□□□□ -0.56
SNX13-208ENST00000482558 GPIHBP1Q8IV16 184 aa11.56□□□□□ -0.56
SNX13-208ENST00000482558 SMCPP49901 116 aaPredicted RBP11.55□□□□□ -0.56
SNX13-208ENST00000482558 RBM26Q5T8P6 1007 aaKnown RBP11.55□□□□□ -0.56
SNX13-208ENST00000482558 THAP11Q96EK4 314 aa11.55□□□□□ -0.56
SNX13-208ENST00000482558 CYP4X1Q8N118 509 aa11.54□□□□□ -0.56
SNX13-208ENST00000482558 FCF1Q9Y324 198 aaKnown RBP11.54□□□□□ -0.56
SNX13-208ENST00000482558 SALL2Q9Y467 1007 aaPredicted RBP11.54□□□□□ -0.56
SNX13-208ENST00000482558 CUX2O14529 1486 aa11.53□□□□□ -0.56
SNX13-208ENST00000482558 FGD5Q6ZNL6 1462 aa11.53□□□□□ -0.56
SNX13-208ENST00000482558 AXIN1O15169 862 aa11.53□□□□□ -0.56
SNX13-208ENST00000482558 ATP6V1AP38606 617 aa11.52□□□□□ -0.57
SNX13-208ENST00000482558 IGF1RP08069 1367 aa11.52□□□□□ -0.57
SNX13-208ENST00000482558 PDS5BQ9NTI5 1447 aa11.52□□□□□ -0.57
SNX13-208ENST00000482558 FMNL1O95466 1100 aaPredicted RBP11.51□□□□□ -0.57
SNX13-208ENST00000482558 FUT2Q10981 343 aa11.5□□□□□ -0.57
SNX13-208ENST00000482558 FAM160A2Q8N612 972 aaPredicted RBP11.5□□□□□ -0.57
SNX13-208ENST00000482558 DACH1Q9UI36 760 aa11.5□□□□□ -0.57
SNX13-208ENST00000482558 ABCA10Q8WWZ4 1543 aa11.5□□□□□ -0.57
SNX13-208ENST00000482558 C11orf95C9JLR9 678 aaPredicted RBP11.49□□□□□ -0.57
SNX13-208ENST00000482558 WFS1O76024 890 aa11.49□□□□□ -0.57
SNX13-208ENST00000482558 RDH13Q8NBN7 331 aa11.49□□□□□ -0.57
SNX13-208ENST00000482558 GMPR2Q9P2T1 348 aaKnown RBP11.49□□□□□ -0.57
SNX13-208ENST00000482558 ZMYND10O75800 440 aa11.48□□□□□ -0.57
SNX13-208ENST00000482558 CARMIL1Q5VZK9 1371 aa11.48□□□□□ -0.57
SNX13-208ENST00000482558 TOPBP1Q92547 1522 aa11.48□□□□□ -0.57
SNX13-208ENST00000482558 SLC27A5Q9Y2P5 690 aa11.47□□□□□ -0.57
SNX13-208ENST00000482558 GCGRP47871 477 aa11.46□□□□□ -0.57
SNX13-208ENST00000482558 NEUROD2Q15784 382 aa11.46□□□□□ -0.57
SNX13-208ENST00000482558 MSS51Q4VC12 460 aa11.46□□□□□ -0.57
SNX13-208ENST00000482558 PPARGC1BQ86YN6 1023 aaKnown RBP11.46□□□□□ -0.57
SNX13-208ENST00000482558 SULF1Q8IWU6 871 aa11.46□□□□□ -0.57
SNX13-208ENST00000482558 SLC24A3Q9HC58 644 aa11.46□□□□□ -0.57
SNX13-208ENST00000482558 GNPATO15228 680 aa11.45□□□□□ -0.58
SNX13-208ENST00000482558 ZBTB24O43167 697 aaPredicted RBP11.45□□□□□ -0.58
SNX13-208ENST00000482558 BRICD5Q6PL45 260 aa11.45□□□□□ -0.58
SNX13-208ENST00000482558 CCER1Q8TC90 406 aaPredicted RBP11.45□□□□□ -0.58
SNX13-208ENST00000482558 CUL7Q14999 1698 aa11.45□□□□□ -0.58
SNX13-208ENST00000482558 MAP3K1Q13233 1512 aa11.45□□□□□ -0.58
SNX13-208ENST00000482558 ARAP1Q96P48 1450 aa11.44□□□□□ -0.58
SNX13-208ENST00000482558 TTC24A2A3L6 582 aaPredicted RBP11.44□□□□□ -0.58
SNX13-208ENST00000482558 DDX11L8A8MPP1 907 aa11.44□□□□□ -0.58
SNX13-208ENST00000482558 WIPF1O43516 503 aa11.44□□□□□ -0.58
SNX13-208ENST00000482558 NFX1Q12986 1120 aaKnown RBP11.44□□□□□ -0.58
SNX13-208ENST00000482558 STK17AQ9UEE5 414 aa11.44□□□□□ -0.58
SNX13-208ENST00000482558 POLA1P09884 1462 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms