RNA–Protein interactions for RNA: ENST00000479107.1

HLA-DPA1-247, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 5,025 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-247ENST00000479107 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.74□□□□□ -0.69
HLA-DPA1-247ENST00000479107 MORC1Q86VD1 984 aa10.74□□□□□ -0.69
HLA-DPA1-247ENST00000479107 CGNL1Q0VF96 1302 aa10.73□□□□□ -0.69
HLA-DPA1-247ENST00000479107 CFAP43Q8NDM7 1665 aa10.73□□□□□ -0.69
HLA-DPA1-247ENST00000479107 ITPRIPQ8IWB1 547 aa10.73□□□□□ -0.69
HLA-DPA1-247ENST00000479107 DDX49Q9Y6V7 483 aaKnown RBP10.73□□□□□ -0.69
HLA-DPA1-247ENST00000479107 CCDC141Q6ZP82 1450 aa10.73□□□□□ -0.69
HLA-DPA1-247ENST00000479107 TNNT3P45378 269 aaPredicted RBP10.73□□□□□ -0.69
HLA-DPA1-247ENST00000479107 MAP7D2Q96T17 732 aa10.73□□□□□ -0.69
HLA-DPA1-247ENST00000479107 MIA2Q96PC5 1412 aa10.72□□□□□ -0.69
HLA-DPA1-247ENST00000479107 NUP153P49790 1475 aaKnown RBP10.72□□□□□ -0.69
HLA-DPA1-247ENST00000479107 MRE11P49959 708 aa10.72□□□□□ -0.69
HLA-DPA1-247ENST00000479107 NPHP3Q7Z494 1330 aa10.72□□□□□ -0.69
HLA-DPA1-247ENST00000479107 PHF14O94880 888 aa10.72□□□□□ -0.69
HLA-DPA1-247ENST00000479107 CSPP1Q1MSJ5 1256 aa10.71□□□□□ -0.69
HLA-DPA1-247ENST00000479107 CCDC7Q96M83 1385 aa10.71□□□□□ -0.69
HLA-DPA1-247ENST00000479107 FYCO1Q9BQS8 1478 aa10.71□□□□□ -0.7
HLA-DPA1-247ENST00000479107 BCL11BQ9C0K0 894 aaPredicted RBP10.7□□□□□ -0.7
HLA-DPA1-247ENST00000479107 FAM13BQ9NYF5 915 aa10.7□□□□□ -0.7
HLA-DPA1-247ENST00000479107 TPM2P07951 284 aa10.7□□□□□ -0.7
HLA-DPA1-247ENST00000479107 MTERF4Q7Z6M4 381 aaKnown RBP10.7□□□□□ -0.7
HLA-DPA1-247ENST00000479107 PCF11O94913 1555 aaKnown RBP10.7□□□□□ -0.7
HLA-DPA1-247ENST00000479107 PTPRTO14522 1441 aa10.7□□□□□ -0.7
HLA-DPA1-247ENST00000479107 RBM6P78332 1123 aaKnown RBP10.69□□□□□ -0.7
HLA-DPA1-247ENST00000479107 IDI1Q13907 227 aa10.69□□□□□ -0.7
HLA-DPA1-247ENST00000479107 BACH2Q9BYV9 841 aa10.69□□□□□ -0.7
HLA-DPA1-247ENST00000479107 KCNJ4P48050 445 aa10.68□□□□□ -0.7
HLA-DPA1-247ENST00000479107 FOXD4L1Q9NU39 408 aa10.68□□□□□ -0.7
HLA-DPA1-247ENST00000479107 KIF21BO75037 1637 aa10.68□□□□□ -0.7
HLA-DPA1-247ENST00000479107 JCADQ9P266 1359 aa10.68□□□□□ -0.7
HLA-DPA1-247ENST00000479107 FRAT2O75474 233 aaPredicted RBP10.68□□□□□ -0.7
HLA-DPA1-247ENST00000479107 CLUAP1Q96AJ1 413 aa10.68□□□□□ -0.7
HLA-DPA1-247ENST00000479107 TMX4Q9H1E5 349 aaPredicted RBP10.68□□□□□ -0.7
HLA-DPA1-247ENST00000479107 KIAA1107Q9UPP5 1409 aa10.67□□□□□ -0.7
HLA-DPA1-247ENST00000479107 SMC4Q9NTJ3 1288 aa10.67□□□□□ -0.7
HLA-DPA1-247ENST00000479107 USP47Q96K76 1375 aa10.67□□□□□ -0.7
HLA-DPA1-247ENST00000479107 E9PSI1 815 aa10.67□□□□□ -0.7
HLA-DPA1-247ENST00000479107 ST18O60284 1047 aa10.67□□□□□ -0.7
HLA-DPA1-247ENST00000479107 XPCQ01831 940 aaPredicted RBP10.67□□□□□ -0.7
HLA-DPA1-247ENST00000479107 HDGFL2Q7Z4V5 671 aaPredicted RBP10.67□□□□□ -0.7
HLA-DPA1-247ENST00000479107 TMEM94Q12767 1356 aa10.67□□□□□ -0.7
HLA-DPA1-247ENST00000479107 WASHC2AQ641Q2 1341 aa10.67□□□□□ -0.7
HLA-DPA1-247ENST00000479107 SYTL4Q96C24 671 aaPredicted RBP10.67□□□□□ -0.7
HLA-DPA1-247ENST00000479107 SHROOM2Q13796 1616 aa10.66□□□□□ -0.7
HLA-DPA1-247ENST00000479107 NCOA2Q15596 1464 aa10.66□□□□□ -0.7
HLA-DPA1-247ENST00000479107 NPATQ14207 1427 aa10.66□□□□□ -0.7
HLA-DPA1-247ENST00000479107 ST20-MTHFSA0A0A6YYL1 179 aa10.66□□□□□ -0.7
HLA-DPA1-247ENST00000479107 RRP9O43818 475 aaKnown RBP10.66□□□□□ -0.7
HLA-DPA1-247ENST00000479107 FGD1P98174 961 aa10.66□□□□□ -0.7
HLA-DPA1-247ENST00000479107 KIF7Q2M1P5 1343 aa10.66□□□□□ -0.7
HLA-DPA1-247ENST00000479107 CCDC146Q8IYE0 955 aa10.66□□□□□ -0.7
HLA-DPA1-247ENST00000479107 FOXO3O43524 673 aa10.65□□□□□ -0.7
HLA-DPA1-247ENST00000479107 U2AF1L5P0DN76 240 aaPredicted RBP10.65□□□□□ -0.7
HLA-DPA1-247ENST00000479107 U2AF1Q01081 240 aaKnown RBP eCLIP10.65□□□□□ -0.7
HLA-DPA1-247ENST00000479107 TBX22Q9Y458 520 aa10.65□□□□□ -0.7
HLA-DPA1-247ENST00000479107 NGEFQ8N5V2 710 aa10.65□□□□□ -0.7
HLA-DPA1-247ENST00000479107 SPATA31A6Q5VVP1 1343 aa10.65□□□□□ -0.7
HLA-DPA1-247ENST00000479107 EIF3AQ14152 1382 aaKnown RBP10.65□□□□□ -0.71
HLA-DPA1-247ENST00000479107 RRBP1Q9P2E9 1410 aaKnown RBP10.65□□□□□ -0.71
HLA-DPA1-247ENST00000479107 HTATSF1O43719 755 aaKnown RBP10.64□□□□□ -0.71
HLA-DPA1-247ENST00000479107 POLD1P28340 1107 aa10.64□□□□□ -0.71
HLA-DPA1-247ENST00000479107 UBE2Q2Q8WVN8 375 aa10.64□□□□□ -0.71
HLA-DPA1-247ENST00000479107 ABCA8O94911 1581 aa10.64□□□□□ -0.71
HLA-DPA1-247ENST00000479107 COL17A1Q9UMD9 1497 aaPredicted RBP10.64□□□□□ -0.71
HLA-DPA1-247ENST00000479107 ISY1Q9ULR0 285 aaKnown RBP10.64□□□□□ -0.71
HLA-DPA1-247ENST00000479107 SMG6Q86US8 1419 aaKnown RBP10.64□□□□□ -0.71
HLA-DPA1-247ENST00000479107 OS9Q13438 667 aaPredicted RBP10.63□□□□□ -0.71
HLA-DPA1-247ENST00000479107 KIAA1211Q6ZU35 1233 aa10.63□□□□□ -0.71
HLA-DPA1-247ENST00000479107 COG6Q9Y2V7 657 aa10.63□□□□□ -0.71
HLA-DPA1-247ENST00000479107 EHBP1L1Q8N3D4 1523 aa10.63□□□□□ -0.71
HLA-DPA1-247ENST00000479107 ANKRD50Q9ULJ7 1429 aa10.63□□□□□ -0.71
HLA-DPA1-247ENST00000479107 AAMPQ13685 434 aa10.63□□□□□ -0.71
HLA-DPA1-247ENST00000479107 TRAK2O60296 914 aa10.63□□□□□ -0.71
HLA-DPA1-247ENST00000479107 ZNF771Q7L3S4 317 aaPredicted RBP10.63□□□□□ -0.71
HLA-DPA1-247ENST00000479107 BRD4O60885 1362 aaPredicted RBP10.63□□□□□ -0.71
HLA-DPA1-247ENST00000479107 TOM1L2Q6ZVM7 507 aa10.62□□□□□ -0.71
HLA-DPA1-247ENST00000479107 PANK3Q9H999 370 aa10.62□□□□□ -0.71
HLA-DPA1-247ENST00000479107 TRAK1Q9UPV9 953 aa10.62□□□□□ -0.71
HLA-DPA1-247ENST00000479107 AFF2P51816 1311 aa10.62□□□□□ -0.71
HLA-DPA1-247ENST00000479107 RIMS1Q86UR5 1692 aaKnown RBP10.62□□□□□ -0.71
HLA-DPA1-247ENST00000479107 KRT28Q7Z3Y7 464 aa10.62□□□□□ -0.71
HLA-DPA1-247ENST00000479107 MINK1Q8N4C8 1332 aaPredicted RBP10.62□□□□□ -0.71
HLA-DPA1-247ENST00000479107 RTEL1-TNFRSF6BF6WH68 1400 aa10.62□□□□□ -0.71
HLA-DPA1-247ENST00000479107 APBB1O00213 710 aa10.61□□□□□ -0.71
HLA-DPA1-247ENST00000479107 RPGRIP1LQ68CZ1 1315 aa10.61□□□□□ -0.71
HLA-DPA1-247ENST00000479107 ZKSCAN2Q63HK3 967 aa10.61□□□□□ -0.71
HLA-DPA1-247ENST00000479107 NLRP1Q9C000 1473 aa10.61□□□□□ -0.71
HLA-DPA1-247ENST00000479107 NASPP49321 788 aaPredicted RBP10.61□□□□□ -0.71
HLA-DPA1-247ENST00000479107 KIF16BQ96L93 1317 aa10.6□□□□□ -0.71
HLA-DPA1-247ENST00000479107 C16orf71Q8IYS4 520 aaPredicted RBP10.6□□□□□ -0.71
HLA-DPA1-247ENST00000479107 R3HCC1Q9Y3T6 440 aaKnown RBP10.6□□□□□ -0.71
HLA-DPA1-247ENST00000479107 MLH3Q9UHC1 1453 aa10.6□□□□□ -0.71
HLA-DPA1-247ENST00000479107 C11orf95C9JLR9 678 aaPredicted RBP10.6□□□□□ -0.71
HLA-DPA1-247ENST00000479107 C22orf23Q9BZE7 217 aa10.6□□□□□ -0.71
HLA-DPA1-247ENST00000479107 CCDC144AA2RUR9 1427 aa10.6□□□□□ -0.71
HLA-DPA1-247ENST00000479107 PHF8Q9UPP1 1060 aa10.6□□□□□ -0.71
HLA-DPA1-247ENST00000479107 CTTNBP2Q8WZ74 1663 aa10.6□□□□□ -0.71
HLA-DPA1-247ENST00000479107 STK32BQ9NY57 414 aa10.59□□□□□ -0.71
HLA-DPA1-247ENST00000479107 ATAD2Q6PL18 1390 aa10.59□□□□□ -0.71
HLA-DPA1-247ENST00000479107 NUCB2P80303 420 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms