RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 USP47Q96K76 1375 aa9.31□□□□□ -0.92
LDB3-206ENST00000477489 CCDC7Q96M83 1385 aa9.3□□□□□ -0.92
LDB3-206ENST00000477489 CCER2I3L3R5 266 aa9.3□□□□□ -0.92
LDB3-206ENST00000477489 COLQQ9Y215 455 aaPredicted RBP9.3□□□□□ -0.92
LDB3-206ENST00000477489 IFT172Q9UG01 1749 aa9.3□□□□□ -0.92
LDB3-206ENST00000477489 SLC24A1O60721 1099 aa9.29□□□□□ -0.92
LDB3-206ENST00000477489 SEC24BO95487 1268 aa9.29□□□□□ -0.92
LDB3-206ENST00000477489 DCAF11Q8TEB1 546 aa9.29□□□□□ -0.92
LDB3-206ENST00000477489 ADGRB3O60242 1522 aa9.29□□□□□ -0.92
LDB3-206ENST00000477489 ARHGEF40Q8TER5 1519 aa9.29□□□□□ -0.92
LDB3-206ENST00000477489 PIK3C2BO00750 1634 aa9.28□□□□□ -0.92
LDB3-206ENST00000477489 ANP32CO43423 234 aa9.28□□□□□ -0.92
LDB3-206ENST00000477489 NOS1P29475 1434 aa9.28□□□□□ -0.92
LDB3-206ENST00000477489 NPATQ14207 1427 aa9.28□□□□□ -0.92
LDB3-206ENST00000477489 WASHC2AQ641Q2 1341 aa9.28□□□□□ -0.92
LDB3-206ENST00000477489 DDX10Q13206 875 aaKnown RBP9.27□□□□□ -0.93
LDB3-206ENST00000477489 MAMSTRQ6ZN01 415 aa9.27□□□□□ -0.93
LDB3-206ENST00000477489 CARD11Q9BXL7 1154 aa9.27□□□□□ -0.93
LDB3-206ENST00000477489 RPGRIP1LQ68CZ1 1315 aa9.27□□□□□ -0.93
LDB3-206ENST00000477489 NRXN1Q9ULB1 1477 aa9.27□□□□□ -0.93
LDB3-206ENST00000477489 RAPGEF3O95398 923 aa9.26□□□□□ -0.93
LDB3-206ENST00000477489 IQGAP1P46940 1657 aa9.26□□□□□ -0.93
LDB3-206ENST00000477489 SETBP1Q9Y6X0 1596 aa9.25□□□□□ -0.93
LDB3-206ENST00000477489 WASHC2CQ9Y4E1 1318 aa9.25□□□□□ -0.93
LDB3-206ENST00000477489 KTN1Q86UP2 1357 aaKnown RBP9.24□□□□□ -0.93
LDB3-206ENST00000477489 PPLO60437 1756 aa9.24□□□□□ -0.93
LDB3-206ENST00000477489 STRCQ7RTU9 1775 aa9.24□□□□□ -0.93
LDB3-206ENST00000477489 YEATS2Q9ULM3 1422 aa9.24□□□□□ -0.93
LDB3-206ENST00000477489 EIF3AQ14152 1382 aaKnown RBP9.24□□□□□ -0.93
LDB3-206ENST00000477489 PREX1Q8TCU6 1659 aa9.23□□□□□ -0.93
LDB3-206ENST00000477489 SCUBE2Q9NQ36 999 aa9.23□□□□□ -0.93
LDB3-206ENST00000477489 SLC52A1Q9NWF4 448 aa9.23□□□□□ -0.93
LDB3-206ENST00000477489 KIF7Q2M1P5 1343 aa9.23□□□□□ -0.93
LDB3-206ENST00000477489 MROH2AA6NES4 1674 aa9.23□□□□□ -0.93
LDB3-206ENST00000477489 ZFYVE9O95405 1425 aa9.22□□□□□ -0.93
LDB3-206ENST00000477489 SCAF11Q99590 1463 aaKnown RBP9.22□□□□□ -0.93
LDB3-206ENST00000477489 PSEN1P49768 467 aa9.22□□□□□ -0.93
LDB3-206ENST00000477489 IRX5P78411 483 aaPredicted RBP9.22□□□□□ -0.93
LDB3-206ENST00000477489 ZNF326Q5BKZ1 582 aaKnown RBP9.22□□□□□ -0.93
LDB3-206ENST00000477489 KDM2AQ9Y2K7 1162 aa9.22□□□□□ -0.93
LDB3-206ENST00000477489 SYNMO15061 1565 aa9.21□□□□□ -0.93
LDB3-206ENST00000477489 MYO3AQ8NEV4 1616 aa9.21□□□□□ -0.93
LDB3-206ENST00000477489 PLCG2P16885 1265 aa9.21□□□□□ -0.94
LDB3-206ENST00000477489 RGL3Q3MIN7 710 aa9.21□□□□□ -0.94
LDB3-206ENST00000477489 GGT6Q6P531 493 aa9.21□□□□□ -0.94
LDB3-206ENST00000477489 SIGLEC1Q9BZZ2 1709 aa9.21□□□□□ -0.94
LDB3-206ENST00000477489 KDM5AP29375 1690 aaKnown RBP9.2□□□□□ -0.94
LDB3-206ENST00000477489 FER1L4A9Z1Z3 1794 aa9.2□□□□□ -0.94
LDB3-206ENST00000477489 CDCA8Q53HL2 280 aa9.2□□□□□ -0.94
LDB3-206ENST00000477489 HIRIP3Q9BW71 556 aaPredicted RBP9.2□□□□□ -0.94
LDB3-206ENST00000477489 SBNO2Q9Y2G9 1366 aa9.2□□□□□ -0.94
LDB3-206ENST00000477489 PDAP1Q13442 181 aaKnown RBP9.19□□□□□ -0.94
LDB3-206ENST00000477489 PIK3C2GO75747 1445 aa9.19□□□□□ -0.94
LDB3-206ENST00000477489 UGGT1Q9NYU2 1555 aa9.19□□□□□ -0.94
LDB3-206ENST00000477489 ST20-MTHFSA0A0A6YYL1 179 aa9.18□□□□□ -0.94
LDB3-206ENST00000477489 C11orf95C9JLR9 678 aaPredicted RBP9.18□□□□□ -0.94
LDB3-206ENST00000477489 ERVK-7P63135 1459 aa9.18□□□□□ -0.94
LDB3-206ENST00000477489 IQSEC2Q5JU85 1478 aa9.18□□□□□ -0.94
LDB3-206ENST00000477489 NEXMIFQ5QGS0 1516 aa9.18□□□□□ -0.94
LDB3-206ENST00000477489 LTBP4Q8N2S1 1624 aa9.18□□□□□ -0.94
LDB3-206ENST00000477489 OCEL1Q9H607 264 aa9.18□□□□□ -0.94
LDB3-206ENST00000477489 TMEM131LA2VDJ0 1609 aa9.17□□□□□ -0.94
LDB3-206ENST00000477489 MED1Q15648 1581 aaPredicted RBP9.17□□□□□ -0.94
LDB3-206ENST00000477489 TMF1P82094 1093 aa9.17□□□□□ -0.94
LDB3-206ENST00000477489 GOLGA2Q08379 1002 aa9.17□□□□□ -0.94
LDB3-206ENST00000477489 CLTCQ00610 1675 aaKnown RBP9.16□□□□□ -0.94
LDB3-206ENST00000477489 CFAP65Q6ZU64 1925 aaKnown RBP9.16□□□□□ -0.94
LDB3-206ENST00000477489 VGFO15240 615 aaPredicted RBP9.16□□□□□ -0.94
LDB3-206ENST00000477489 PRKRIP1Q9H875 184 aaPredicted RBP9.16□□□□□ -0.94
LDB3-206ENST00000477489 MKRN3Q13064 507 aaKnown RBP9.15□□□□□ -0.94
LDB3-206ENST00000477489 NBPF1Q3BBV0 1214 aa9.15□□□□□ -0.94
LDB3-206ENST00000477489 TESK2Q96S53 571 aa9.15□□□□□ -0.94
LDB3-206ENST00000477489 PUS7Q96PZ0 661 aaKnown RBP9.14□□□□□ -0.95
LDB3-206ENST00000477489 C14orf93Q9H972 538 aaKnown RBP9.14□□□□□ -0.95
LDB3-206ENST00000477489 ADGRB1O14514 1584 aa9.14□□□□□ -0.95
LDB3-206ENST00000477489 RALBP1Q15311 655 aa9.13□□□□□ -0.95
LDB3-206ENST00000477489 NPC1L1Q9UHC9 1359 aa9.12□□□□□ -0.95
LDB3-206ENST00000477489 ADGRF5Q8IZF2 1346 aa9.11□□□□□ -0.95
LDB3-206ENST00000477489 MYO5BQ9ULV0 1848 aa9.11□□□□□ -0.95
LDB3-206ENST00000477489 PDCD7Q8N8D1 485 aaKnown RBP9.11□□□□□ -0.95
LDB3-206ENST00000477489 INSRP06213 1382 aa9.11□□□□□ -0.95
LDB3-206ENST00000477489 IDI1Q13907 227 aa9.1□□□□□ -0.95
LDB3-206ENST00000477489 MLECQ14165 292 aa9.1□□□□□ -0.95
LDB3-206ENST00000477489 YTHDC1Q96MU7 727 aaKnown RBP9.1□□□□□ -0.95
LDB3-206ENST00000477489 ESF1Q9H501 851 aaKnown RBP9.1□□□□□ -0.95
LDB3-206ENST00000477489 CABP2Q9NPB3 220 aa9.1□□□□□ -0.95
LDB3-206ENST00000477489 NLRP1Q9C000 1473 aa9.09□□□□□ -0.95
LDB3-206ENST00000477489 ARHGEF28Q8N1W1 1705 aaKnown RBP9.09□□□□□ -0.95
LDB3-206ENST00000477489 HDGFP51858 240 aaKnown RBP9.09□□□□□ -0.95
LDB3-206ENST00000477489 RNF25Q96BH1 459 aaPredicted RBP9.09□□□□□ -0.95
LDB3-206ENST00000477489 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.09□□□□□ -0.95
LDB3-206ENST00000477489 MYOM1P52179 1685 aa9.09□□□□□ -0.95
LDB3-206ENST00000477489 QRICH2Q9H0J4 1663 aa9.09□□□□□ -0.95
LDB3-206ENST00000477489 BRD4O60885 1362 aaPredicted RBP9.09□□□□□ -0.95
LDB3-206ENST00000477489 ZMYM3Q14202 1370 aa9.09□□□□□ -0.95
LDB3-206ENST00000477489 PARD3Q8TEW0 1356 aa9.09□□□□□ -0.95
LDB3-206ENST00000477489 A2ML1A8K2U0 1454 aa9.08□□□□□ -0.96
LDB3-206ENST00000477489 UBAP1LF5GYI3 381 aa9.08□□□□□ -0.96
LDB3-206ENST00000477489 RIOK3O14730 519 aaKnown RBP9.08□□□□□ -0.96
LDB3-206ENST00000477489 CHGAP10645 457 aaKnown RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms