RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 KRT27Q7Z3Y8 459 aa12.89□□□□□ -0.35
USP54-211ENST00000474929 SEPT12Q8IYM1 358 aa12.88□□□□□ -0.35
USP54-211ENST00000474929 PARD3Q8TEW0 1356 aa12.88□□□□□ -0.35
USP54-211ENST00000474929 NPHP3Q7Z494 1330 aa12.88□□□□□ -0.35
USP54-211ENST00000474929 C1QTNF8P60827 252 aa12.87□□□□□ -0.35
USP54-211ENST00000474929 PPP1R1BQ9UD71 204 aaPredicted RBP12.87□□□□□ -0.35
USP54-211ENST00000474929 ZNF784Q8NCA9 323 aaPredicted RBP12.86□□□□□ -0.35
USP54-211ENST00000474929 NWD2Q9ULI1 1742 aa12.85□□□□□ -0.35
USP54-211ENST00000474929 IQGAP3Q86VI3 1631 aa12.84□□□□□ -0.35
USP54-211ENST00000474929 LRPPRCP42704 1394 aaKnown RBP12.84□□□□□ -0.35
USP54-211ENST00000474929 USP32Q8NFA0 1604 aa12.84□□□□□ -0.35
USP54-211ENST00000474929 ONECUT3O60422 494 aaPredicted RBP12.83□□□□□ -0.36
USP54-211ENST00000474929 VPS72Q15906 364 aa12.83□□□□□ -0.36
USP54-211ENST00000474929 ADGRL2O95490 1459 aa12.83□□□□□ -0.36
USP54-211ENST00000474929 ANKRD30AQ9BXX3 1397 aa12.82□□□□□ -0.36
USP54-211ENST00000474929 NRXN3Q9Y4C0 1643 aa12.82□□□□□ -0.36
USP54-211ENST00000474929 CHGAP10645 457 aaKnown RBP12.82□□□□□ -0.36
USP54-211ENST00000474929 RRP7BPQ9NSQ0 103 aa12.82□□□□□ -0.36
USP54-211ENST00000474929 PXDNQ92626 1479 aa12.81□□□□□ -0.36
USP54-211ENST00000474929 EN1Q05925 392 aaPredicted RBP12.81□□□□□ -0.36
USP54-211ENST00000474929 TNS1Q9HBL0 1735 aaKnown RBP12.81□□□□□ -0.36
USP54-211ENST00000474929 SPON1Q9HCB6 807 aa12.8□□□□□ -0.36
USP54-211ENST00000474929 A0A0G2JS52 829 aa12.79□□□□□ -0.36
USP54-211ENST00000474929 MYT1Q01538 1121 aa12.79□□□□□ -0.36
USP54-211ENST00000474929 CCDC9Q9Y3X0 531 aaKnown RBP12.79□□□□□ -0.36
USP54-211ENST00000474929 PLCH1Q4KWH8 1693 aa12.78□□□□□ -0.36
USP54-211ENST00000474929 ABCC5O15440 1437 aa12.78□□□□□ -0.36
USP54-211ENST00000474929 NBPF8Q3BBV2 869 aa12.77□□□□□ -0.37
USP54-211ENST00000474929 NBPF14Q5TI25 921 aa12.77□□□□□ -0.37
USP54-211ENST00000474929 ORAI2Q96SN7 254 aa12.77□□□□□ -0.37
USP54-211ENST00000474929 DAPK1P53355 1430 aa12.77□□□□□ -0.37
USP54-211ENST00000474929 PRAG1Q86YV5 1406 aa12.77□□□□□ -0.37
USP54-211ENST00000474929 CDC42BPGQ6DT37 1551 aa12.77□□□□□ -0.37
USP54-211ENST00000474929 NEXMIFQ5QGS0 1516 aa12.76□□□□□ -0.37
USP54-211ENST00000474929 RREB1Q92766 1687 aa12.76□□□□□ -0.37
USP54-211ENST00000474929 METP08581 1390 aa12.75□□□□□ -0.37
USP54-211ENST00000474929 HAP1P54257 671 aaPredicted RBP12.75□□□□□ -0.37
USP54-211ENST00000474929 CHD4Q14839 1912 aa12.75□□□□□ -0.37
USP54-211ENST00000474929 HFM1A2PYH4 1435 aa12.74□□□□□ -0.37
USP54-211ENST00000474929 CCDC144AA2RUR9 1427 aa12.74□□□□□ -0.37
USP54-211ENST00000474929 GIGYF1O75420 1035 aaPredicted RBP12.74□□□□□ -0.37
USP54-211ENST00000474929 KCNQ2O43526 872 aa12.73□□□□□ -0.37
USP54-211ENST00000474929 KIF1AQ12756 1690 aa12.73□□□□□ -0.37
USP54-211ENST00000474929 CAMTA1Q9Y6Y1 1673 aa12.73□□□□□ -0.37
USP54-211ENST00000474929 NUP188Q5SRE5 1749 aa12.72□□□□□ -0.37
USP54-211ENST00000474929 EZH2Q15910 746 aaKnown RBP12.72□□□□□ -0.37
USP54-211ENST00000474929 ESCO1Q5FWF5 840 aa12.71□□□□□ -0.37
USP54-211ENST00000474929 CAMKK2Q96RR4 588 aa12.71□□□□□ -0.37
USP54-211ENST00000474929 E9PCH4 1651 aa12.7□□□□□ -0.38
USP54-211ENST00000474929 SPATA31A3Q5VYP0 1347 aa12.69□□□□□ -0.38
USP54-211ENST00000474929 ANKRD50Q9ULJ7 1429 aa12.69□□□□□ -0.38
USP54-211ENST00000474929 THSD7AQ9UPZ6 1657 aa12.68□□□□□ -0.38
USP54-211ENST00000474929 CEP350Q5VT06 3117 aa12.68□□□□□ -0.38
USP54-211ENST00000474929 NRAPQ86VF7 1730 aa12.68□□□□□ -0.38
USP54-211ENST00000474929 FOXO3O43524 673 aa12.67□□□□□ -0.38
USP54-211ENST00000474929 FAM98CQ17RN3 349 aaKnown RBP12.67□□□□□ -0.38
USP54-211ENST00000474929 FAM196AQ6ZSG2 479 aa12.67□□□□□ -0.38
USP54-211ENST00000474929 TNS3Q68CZ2 1445 aa12.67□□□□□ -0.38
USP54-211ENST00000474929 ABCA3Q99758 1704 aa12.67□□□□□ -0.38
USP54-211ENST00000474929 NRKQ7Z2Y5 1582 aa12.66□□□□□ -0.38
USP54-211ENST00000474929 RRBP1Q9P2E9 1410 aaKnown RBP12.66□□□□□ -0.38
USP54-211ENST00000474929 ARHGEF10O15013 1369 aa12.66□□□□□ -0.38
USP54-211ENST00000474929 ROBO2Q9HCK4 1378 aa12.66□□□□□ -0.38
USP54-211ENST00000474929 APBA3O96018 575 aa12.65□□□□□ -0.38
USP54-211ENST00000474929 COL14A1Q05707 1796 aaKnown RBP12.64□□□□□ -0.39
USP54-211ENST00000474929 DLC1Q96QB1 1528 aa12.63□□□□□ -0.39
USP54-211ENST00000474929 UTRNP46939 3433 aa12.63□□□□□ -0.39
USP54-211ENST00000474929 XPCQ01831 940 aaPredicted RBP12.63□□□□□ -0.39
USP54-211ENST00000474929 ZNF326Q5BKZ1 582 aaKnown RBP12.63□□□□□ -0.39
USP54-211ENST00000474929 RGPD3A6NKT7 1758 aaPredicted RBP12.63□□□□□ -0.39
USP54-211ENST00000474929 RGPD4Q7Z3J3 1758 aa12.63□□□□□ -0.39
USP54-211ENST00000474929 TRIM37O94972 964 aa12.62□□□□□ -0.39
USP54-211ENST00000474929 C11orf95C9JLR9 678 aaPredicted RBP12.61□□□□□ -0.39
USP54-211ENST00000474929 PSME1Q06323 249 aa12.61□□□□□ -0.39
USP54-211ENST00000474929 SBNO1A3KN83 1393 aa12.6□□□□□ -0.39
USP54-211ENST00000474929 CASZ1Q86V15 1759 aa12.6□□□□□ -0.39
USP54-211ENST00000474929 MYOM1P52179 1685 aa12.6□□□□□ -0.39
USP54-211ENST00000474929 SPATA31A5Q5VU36 1347 aa12.6□□□□□ -0.39
USP54-211ENST00000474929 SPATA31A7Q8IWB4 1347 aa12.6□□□□□ -0.39
USP54-211ENST00000474929 CHIC2Q9UKJ5 165 aa12.59□□□□□ -0.39
USP54-211ENST00000474929 NAIPQ13075 1403 aa12.59□□□□□ -0.39
USP54-211ENST00000474929 FAM182BQ5T319 152 aa12.58□□□□□ -0.4
USP54-211ENST00000474929 VPS8Q8N3P4 1428 aa12.57□□□□□ -0.4
USP54-211ENST00000474929 FAM83GA6ND36 823 aa12.57□□□□□ -0.4
USP54-211ENST00000474929 KRT28Q7Z3Y7 464 aa12.57□□□□□ -0.4
USP54-211ENST00000474929 BTG4Q9NY30 223 aa12.57□□□□□ -0.4
USP54-211ENST00000474929 FMN2Q9NZ56 1722 aa12.57□□□□□ -0.4
USP54-211ENST00000474929 MAP3K5Q99683 1374 aa12.56□□□□□ -0.4
USP54-211ENST00000474929 VGFO15240 615 aaPredicted RBP12.55□□□□□ -0.4
USP54-211ENST00000474929 SYT17Q9BSW7 474 aa12.54□□□□□ -0.4
USP54-211ENST00000474929 HSPA6P17066 643 aa12.53□□□□□ -0.4
USP54-211ENST00000474929 FHDC1Q9C0D6 1143 aaPredicted RBP12.53□□□□□ -0.4
USP54-211ENST00000474929 TECPR2O15040 1411 aa12.53□□□□□ -0.4
USP54-211ENST00000474929 PDE3BQ13370 1112 aa12.52□□□□□ -0.41
USP54-211ENST00000474929 CABLES1Q8TDN4 633 aa12.52□□□□□ -0.41
USP54-211ENST00000474929 KIF1BO60333 1816 aa12.52□□□□□ -0.41
USP54-211ENST00000474929 NRXN1Q9ULB1 1477 aa12.52□□□□□ -0.41
USP54-211ENST00000474929 LMOD2Q6P5Q4 547 aa12.51□□□□□ -0.41
USP54-211ENST00000474929 SHANK3Q9BYB0 1731 aa12.51□□□□□ -0.41
USP54-211ENST00000474929 PTGER2P43116 358 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms