RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 NHSL1Q5SYE7 1610 aa10.18□□□□□ -0.78
LIMD1-204ENST00000474665 NRXN1Q9ULB1 1477 aa10.18□□□□□ -0.78
LIMD1-204ENST00000474665 NEUROD1Q13562 356 aa10.18□□□□□ -0.78
LIMD1-204ENST00000474665 ATRNO75882 1429 aa10.17□□□□□ -0.78
LIMD1-204ENST00000474665 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.17□□□□□ -0.78
LIMD1-204ENST00000474665 SF3B2Q13435 895 aaKnown RBP10.17□□□□□ -0.78
LIMD1-204ENST00000474665 FNBP4Q8N3X1 1017 aaPredicted RBP10.17□□□□□ -0.78
LIMD1-204ENST00000474665 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.17□□□□□ -0.78
LIMD1-204ENST00000474665 L3MBTL2Q969R5 705 aa10.17□□□□□ -0.78
LIMD1-204ENST00000474665 BCL9LQ86UU0 1499 aa10.17□□□□□ -0.78
LIMD1-204ENST00000474665 MYOM2P54296 1465 aa10.16□□□□□ -0.78
LIMD1-204ENST00000474665 PIK3C2GO75747 1445 aa10.16□□□□□ -0.78
LIMD1-204ENST00000474665 NCOA3Q9Y6Q9 1424 aa10.16□□□□□ -0.78
LIMD1-204ENST00000474665 CLSPNQ9HAW4 1339 aa10.15□□□□□ -0.78
LIMD1-204ENST00000474665 VGFO15240 615 aaPredicted RBP10.15□□□□□ -0.78
LIMD1-204ENST00000474665 PPP1R15AO75807 674 aaPredicted RBP10.15□□□□□ -0.78
LIMD1-204ENST00000474665 DCAF11Q8TEB1 546 aa10.15□□□□□ -0.78
LIMD1-204ENST00000474665 METP08581 1390 aa10.14□□□□□ -0.79
LIMD1-204ENST00000474665 ASXL1Q8IXJ9 1541 aa10.14□□□□□ -0.79
LIMD1-204ENST00000474665 HDGFP51858 240 aaKnown RBP10.14□□□□□ -0.79
LIMD1-204ENST00000474665 R3HDM1Q15032 1099 aaKnown RBP10.14□□□□□ -0.79
LIMD1-204ENST00000474665 CCER1Q8TC90 406 aaPredicted RBP10.14□□□□□ -0.79
LIMD1-204ENST00000474665 KDM2AQ9Y2K7 1162 aa10.14□□□□□ -0.79
LIMD1-204ENST00000474665 TBX22Q9Y458 520 aa10.14□□□□□ -0.79
LIMD1-204ENST00000474665 CHD2O14647 1828 aaKnown RBP10.14□□□□□ -0.79
LIMD1-204ENST00000474665 GJD4Q96KN9 370 aaPredicted RBP10.13□□□□□ -0.79
LIMD1-204ENST00000474665 PTPRUQ92729 1446 aa10.13□□□□□ -0.79
LIMD1-204ENST00000474665 NBPF8Q3BBV2 869 aa10.12□□□□□ -0.79
LIMD1-204ENST00000474665 C14orf93Q9H972 538 aaKnown RBP10.12□□□□□ -0.79
LIMD1-204ENST00000474665 PRAG1Q86YV5 1406 aa10.11□□□□□ -0.79
LIMD1-204ENST00000474665 C1QTNF8P60827 252 aa10.11□□□□□ -0.79
LIMD1-204ENST00000474665 CFAP70Q5T0N1 1121 aa10.11□□□□□ -0.79
LIMD1-204ENST00000474665 ZNF784Q8NCA9 323 aaPredicted RBP10.11□□□□□ -0.79
LIMD1-204ENST00000474665 STAC3Q96MF2 364 aa10.1□□□□□ -0.79
LIMD1-204ENST00000474665 XRN1Q8IZH2 1706 aaKnown RBP10.1□□□□□ -0.79
LIMD1-204ENST00000474665 ADGRB1O14514 1584 aa10.09□□□□□ -0.79
LIMD1-204ENST00000474665 TMEM132EQ6IEE7 984 aa10.09□□□□□ -0.79
LIMD1-204ENST00000474665 MST1RQ04912 1400 aa10.08□□□□□ -0.8
LIMD1-204ENST00000474665 BAG6P46379 1132 aa10.08□□□□□ -0.8
LIMD1-204ENST00000474665 EN1Q05925 392 aaPredicted RBP10.08□□□□□ -0.8
LIMD1-204ENST00000474665 NBPF1Q3BBV0 1214 aa10.08□□□□□ -0.8
LIMD1-204ENST00000474665 TONSLQ96HA7 1378 aa10.08□□□□□ -0.8
LIMD1-204ENST00000474665 PIK3R4Q99570 1358 aa10.08□□□□□ -0.8
LIMD1-204ENST00000474665 PTCH1Q13635 1447 aa10.07□□□□□ -0.8
LIMD1-204ENST00000474665 DCAF8L1A6NGE4 600 aa10.07□□□□□ -0.8
LIMD1-204ENST00000474665 SEPT12Q8IYM1 358 aa10.07□□□□□ -0.8
LIMD1-204ENST00000474665 AMOTL2Q9Y2J4 779 aa10.07□□□□□ -0.8
LIMD1-204ENST00000474665 KIAA1210Q9ULL0 1709 aa10.07□□□□□ -0.8
LIMD1-204ENST00000474665 LAMC1P11047 1609 aa10.07□□□□□ -0.8
LIMD1-204ENST00000474665 TRPM1Q7Z4N2 1603 aa10.07□□□□□ -0.8
LIMD1-204ENST00000474665 ROBO2Q9HCK4 1378 aa10.06□□□□□ -0.8
LIMD1-204ENST00000474665 LRPPRCP42704 1394 aaKnown RBP10.05□□□□□ -0.8
LIMD1-204ENST00000474665 TIMELESSQ9UNS1 1208 aa10.05□□□□□ -0.8
LIMD1-204ENST00000474665 TECPR2O15040 1411 aa10.05□□□□□ -0.8
LIMD1-204ENST00000474665 YTHDC2Q9H6S0 1430 aaKnown RBP10.05□□□□□ -0.8
LIMD1-204ENST00000474665 BRWD3Q6RI45 1802 aa10.05□□□□□ -0.8
LIMD1-204ENST00000474665 RALGAPBQ86X10 1494 aa10.04□□□□□ -0.8
LIMD1-204ENST00000474665 ABCC11Q96J66 1382 aa10.04□□□□□ -0.8
LIMD1-204ENST00000474665 PLEKHH1Q9ULM0 1364 aa10.03□□□□□ -0.8
LIMD1-204ENST00000474665 GLI3P10071 1580 aa10.03□□□□□ -0.8
LIMD1-204ENST00000474665 DCCP43146 1447 aa10.03□□□□□ -0.8
LIMD1-204ENST00000474665 KNDC1Q76NI1 1749 aa10.03□□□□□ -0.8
LIMD1-204ENST00000474665 KRT27Q7Z3Y8 459 aa10.03□□□□□ -0.8
LIMD1-204ENST00000474665 STK26Q9P289 416 aa10.03□□□□□ -0.8
LIMD1-204ENST00000474665 SOS2Q07890 1332 aaPredicted RBP10.03□□□□□ -0.8
LIMD1-204ENST00000474665 GPRASP1Q5JY77 1395 aa10.02□□□□□ -0.8
LIMD1-204ENST00000474665 WAPLQ7Z5K2 1190 aa10.02□□□□□ -0.81
LIMD1-204ENST00000474665 UNC5CLQ8IV45 518 aa10.02□□□□□ -0.81
LIMD1-204ENST00000474665 EZH2Q15910 746 aaKnown RBP10.01□□□□□ -0.81
LIMD1-204ENST00000474665 ORAI2Q96SN7 254 aa10.01□□□□□ -0.81
LIMD1-204ENST00000474665 PPP1R1BQ9UD71 204 aaPredicted RBP10.01□□□□□ -0.81
LIMD1-204ENST00000474665 ARHGEF28Q8N1W1 1705 aaKnown RBP10.01□□□□□ -0.81
LIMD1-204ENST00000474665 DLC1Q96QB1 1528 aa10.01□□□□□ -0.81
LIMD1-204ENST00000474665 SIRT1Q96EB6 747 aa10□□□□□ -0.81
LIMD1-204ENST00000474665 TRAK1Q9UPV9 953 aa10□□□□□ -0.81
LIMD1-204ENST00000474665 NALCNQ8IZF0 1738 aa9.99□□□□□ -0.81
LIMD1-204ENST00000474665 CAMTA1Q9Y6Y1 1673 aa9.99□□□□□ -0.81
LIMD1-204ENST00000474665 ROCK2O75116 1388 aaKnown RBP9.99□□□□□ -0.81
LIMD1-204ENST00000474665 FAM182BQ5T319 152 aa9.98□□□□□ -0.81
LIMD1-204ENST00000474665 PRAM1Q96QH2 718 aa9.98□□□□□ -0.81
LIMD1-204ENST00000474665 ADGRL3Q9HAR2 1447 aa9.98□□□□□ -0.81
LIMD1-204ENST00000474665 ONECUT3O60422 494 aaPredicted RBP9.97□□□□□ -0.81
LIMD1-204ENST00000474665 C1orf167Q5SNV9 1468 aa9.97□□□□□ -0.81
LIMD1-204ENST00000474665 A0A0G2JS52 829 aa9.96□□□□□ -0.82
LIMD1-204ENST00000474665 MYT1Q01538 1121 aa9.96□□□□□ -0.82
LIMD1-204ENST00000474665 SAFB2Q14151 953 aaKnown RBP eCLIP9.96□□□□□ -0.82
LIMD1-204ENST00000474665 CCDC9Q9Y3X0 531 aaKnown RBP9.96□□□□□ -0.82
LIMD1-204ENST00000474665 COL22A1Q8NFW1 1626 aaPredicted RBP9.96□□□□□ -0.82
LIMD1-204ENST00000474665 CARD11Q9BXL7 1154 aa9.95□□□□□ -0.82
LIMD1-204ENST00000474665 SPON1Q9HCB6 807 aa9.95□□□□□ -0.82
LIMD1-204ENST00000474665 SLIT2O94813 1529 aa9.95□□□□□ -0.82
LIMD1-204ENST00000474665 NINLQ9Y2I6 1382 aa9.94□□□□□ -0.82
LIMD1-204ENST00000474665 KCNQ2O43526 872 aa9.94□□□□□ -0.82
LIMD1-204ENST00000474665 XPCQ01831 940 aaPredicted RBP9.94□□□□□ -0.82
LIMD1-204ENST00000474665 CAMKK2Q96RR4 588 aa9.94□□□□□ -0.82
LIMD1-204ENST00000474665 QRICH2Q9H0J4 1663 aa9.93□□□□□ -0.82
LIMD1-204ENST00000474665 ADGRB2O60241 1585 aa9.93□□□□□ -0.82
LIMD1-204ENST00000474665 VPS72Q15906 364 aa9.93□□□□□ -0.82
LIMD1-204ENST00000474665 TESK2Q96S53 571 aa9.93□□□□□ -0.82
LIMD1-204ENST00000474665 HIRIP3Q9BW71 556 aaPredicted RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms