RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 HDGFP51858 240 aaKnown RBP16.38■□□□□ 0.21
SYNE1-222ENST00000474655 STK26Q9P289 416 aa16.38■□□□□ 0.21
SYNE1-222ENST00000474655 TMEM2Q9UHN6 1383 aa16.38■□□□□ 0.21
SYNE1-222ENST00000474655 PRAM1Q96QH2 718 aa16.38■□□□□ 0.21
SYNE1-222ENST00000474655 ATAD2Q6PL18 1390 aa16.37■□□□□ 0.21
SYNE1-222ENST00000474655 PDE3BQ13370 1112 aa16.37■□□□□ 0.21
SYNE1-222ENST00000474655 RNF123Q5XPI4 1314 aa16.36■□□□□ 0.21
SYNE1-222ENST00000474655 NSD2O96028 1365 aa16.36■□□□□ 0.21
SYNE1-222ENST00000474655 TECPR2O15040 1411 aa16.36■□□□□ 0.21
SYNE1-222ENST00000474655 SIRT1Q96EB6 747 aa16.35■□□□□ 0.21
SYNE1-222ENST00000474655 CABP2Q9NPB3 220 aa16.35■□□□□ 0.21
SYNE1-222ENST00000474655 POGKQ9P215 609 aa16.35■□□□□ 0.21
SYNE1-222ENST00000474655 ADAMTS8Q9UP79 889 aa16.35■□□□□ 0.21
SYNE1-222ENST00000474655 POLR3AO14802 1390 aaPredicted RBP16.35■□□□□ 0.21
SYNE1-222ENST00000474655 CGNL1Q0VF96 1302 aa16.34■□□□□ 0.21
SYNE1-222ENST00000474655 ANKRD26Q9UPS8 1709 aa16.34■□□□□ 0.21
SYNE1-222ENST00000474655 CPS1P31327 1500 aa16.34■□□□□ 0.21
SYNE1-222ENST00000474655 FAM135BQ49AJ0 1406 aa16.33■□□□□ 0.2
SYNE1-222ENST00000474655 CD163L1Q9NR16 1453 aa16.33■□□□□ 0.2
SYNE1-222ENST00000474655 SAFB2Q14151 953 aaKnown RBP eCLIP16.33■□□□□ 0.2
SYNE1-222ENST00000474655 METP08581 1390 aa16.33■□□□□ 0.2
SYNE1-222ENST00000474655 SLIT1O75093 1534 aa16.32■□□□□ 0.2
SYNE1-222ENST00000474655 MINK1Q8N4C8 1332 aaPredicted RBP16.32■□□□□ 0.2
SYNE1-222ENST00000474655 SHPRHQ149N8 1683 aa16.32■□□□□ 0.2
SYNE1-222ENST00000474655 TRHP20396 242 aaPredicted RBP16.31■□□□□ 0.2
SYNE1-222ENST00000474655 WDR43Q15061 677 aaKnown RBP eCLIP16.31■□□□□ 0.2
SYNE1-222ENST00000474655 A0A1W2PP64 1363 aa16.31■□□□□ 0.2
SYNE1-222ENST00000474655 ARHGAP23Q9P227 1491 aa16.31■□□□□ 0.2
SYNE1-222ENST00000474655 SRPK2P78362 688 aaKnown RBP16.31■□□□□ 0.2
SYNE1-222ENST00000474655 SENP3Q9H4L4 574 aaPredicted RBP16.31■□□□□ 0.2
SYNE1-222ENST00000474655 PLEKHG1Q9ULL1 1385 aa16.31■□□□□ 0.2
SYNE1-222ENST00000474655 ADAMTS13Q76LX8 1427 aa16.31■□□□□ 0.2
SYNE1-222ENST00000474655 MED14O60244 1454 aa16.31■□□□□ 0.2
SYNE1-222ENST00000474655 PELP1Q8IZL8 1130 aaKnown RBP16.3■□□□□ 0.2
SYNE1-222ENST00000474655 MORC1Q86VD1 984 aa16.29■□□□□ 0.2
SYNE1-222ENST00000474655 CDK19Q9BWU1 502 aa16.29■□□□□ 0.2
SYNE1-222ENST00000474655 PLEKHH1Q9ULM0 1364 aa16.29■□□□□ 0.2
SYNE1-222ENST00000474655 BCANQ96GW7 911 aa16.28■□□□□ 0.2
SYNE1-222ENST00000474655 TERF2IPQ9NYB0 399 aa16.28■□□□□ 0.2
SYNE1-222ENST00000474655 ATP7BP35670 1465 aa16.27■□□□□ 0.2
SYNE1-222ENST00000474655 CEBPAP49715 358 aaPredicted RBP16.27■□□□□ 0.2
SYNE1-222ENST00000474655 WAPLQ7Z5K2 1190 aa16.27■□□□□ 0.2
SYNE1-222ENST00000474655 KIF20BQ96Q89 1820 aa16.26■□□□□ 0.19
SYNE1-222ENST00000474655 ZNF521Q96K83 1311 aa16.26■□□□□ 0.19
SYNE1-222ENST00000474655 SENP3-EIF4A1A0A087X0R7 540 aa16.26■□□□□ 0.19
SYNE1-222ENST00000474655 LTKP29376 864 aa16.26■□□□□ 0.19
SYNE1-222ENST00000474655 ADGRB2O60241 1585 aa16.25■□□□□ 0.19
SYNE1-222ENST00000474655 NGEFQ8N5V2 710 aa16.24■□□□□ 0.19
SYNE1-222ENST00000474655 IRX6P78412 446 aaPredicted RBP16.23■□□□□ 0.19
SYNE1-222ENST00000474655 WASLO00401 505 aaPredicted RBP16.23■□□□□ 0.19
SYNE1-222ENST00000474655 PPP4R2Q9NY27 417 aa16.23■□□□□ 0.19
SYNE1-222ENST00000474655 DIP2AQ14689 1571 aa16.22■□□□□ 0.19
SYNE1-222ENST00000474655 HDGFL2Q7Z4V5 671 aaPredicted RBP16.22■□□□□ 0.19
SYNE1-222ENST00000474655 SALL2Q9Y467 1007 aaPredicted RBP16.22■□□□□ 0.19
SYNE1-222ENST00000474655 CPSF1Q10570 1443 aaKnown RBP16.22■□□□□ 0.19
SYNE1-222ENST00000474655 FYB1O15117 783 aa16.21■□□□□ 0.19
SYNE1-222ENST00000474655 TXNDC2Q86VQ3 553 aa16.21■□□□□ 0.19
SYNE1-222ENST00000474655 CDCA7LQ96GN5 454 aa16.21■□□□□ 0.19
SYNE1-222ENST00000474655 CABP1Q9NZU7 370 aa16.21■□□□□ 0.19
SYNE1-222ENST00000474655 MTHFSP49914 203 aa16.21■□□□□ 0.18
SYNE1-222ENST00000474655 EID1Q9Y6B2 187 aa16.21■□□□□ 0.18
SYNE1-222ENST00000474655 MON2Q7Z3U7 1717 aa16.2■□□□□ 0.18
SYNE1-222ENST00000474655 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.2■□□□□ 0.18
SYNE1-222ENST00000474655 AKAP12Q02952 1782 aa16.2■□□□□ 0.18
SYNE1-222ENST00000474655 ADAMTSL3P82987 1691 aa16.2■□□□□ 0.18
SYNE1-222ENST00000474655 THEMISQ8N1K5 641 aaPredicted RBP16.2■□□□□ 0.18
SYNE1-222ENST00000474655 RIMS1Q86UR5 1692 aaKnown RBP16.2■□□□□ 0.18
SYNE1-222ENST00000474655 ROBO2Q9HCK4 1378 aa16.19■□□□□ 0.18
SYNE1-222ENST00000474655 CDC42BPGQ6DT37 1551 aa16.19■□□□□ 0.18
SYNE1-222ENST00000474655 CEP170BQ9Y4F5 1589 aaPredicted RBP16.19■□□□□ 0.18
SYNE1-222ENST00000474655 RCAN3Q9UKA8 241 aa16.18■□□□□ 0.18
SYNE1-222ENST00000474655 TBX22Q9Y458 520 aa16.18■□□□□ 0.18
SYNE1-222ENST00000474655 ZNF142P52746 1687 aaPredicted RBP16.18■□□□□ 0.18
SYNE1-222ENST00000474655 PTPRUQ92729 1446 aa16.18■□□□□ 0.18
SYNE1-222ENST00000474655 CFAP53Q96M91 514 aa16.18■□□□□ 0.18
SYNE1-222ENST00000474655 TOPAZ1Q8N9V7 1692 aa16.17■□□□□ 0.18
SYNE1-222ENST00000474655 PPIP5K1Q6PFW1 1433 aa16.17■□□□□ 0.18
SYNE1-222ENST00000474655 TNNT2P45379 298 aaPredicted RBP16.17■□□□□ 0.18
SYNE1-222ENST00000474655 DNAJC5Q9H3Z4 198 aa16.17■□□□□ 0.18
SYNE1-222ENST00000474655 COL3A1P02461 1466 aaPredicted RBP16.17■□□□□ 0.18
SYNE1-222ENST00000474655 ITSN1Q15811 1721 aa16.17■□□□□ 0.18
SYNE1-222ENST00000474655 EDC4Q6P2E9 1401 aaKnown RBP16.16■□□□□ 0.18
SYNE1-222ENST00000474655 TRMT2AQ8IZ69 625 aaKnown RBP16.16■□□□□ 0.18
SYNE1-222ENST00000474655 SETD1BQ9UPS6 1966 aaKnown RBP16.16■□□□□ 0.18
SYNE1-222ENST00000474655 PTCH1Q13635 1447 aa16.16■□□□□ 0.18
SYNE1-222ENST00000474655 IQSEC2Q5JU85 1478 aa16.16■□□□□ 0.18
SYNE1-222ENST00000474655 APAF1O14727 1248 aa16.15■□□□□ 0.18
SYNE1-222ENST00000474655 GOLGA2Q08379 1002 aa16.15■□□□□ 0.18
SYNE1-222ENST00000474655 NCBP3Q53F19 620 aaKnown RBP16.15■□□□□ 0.18
SYNE1-222ENST00000474655 DUSP27Q5VZP5 1158 aa16.15■□□□□ 0.18
SYNE1-222ENST00000474655 GGNBP2Q9H3C7 697 aa16.15■□□□□ 0.18
SYNE1-222ENST00000474655 XRN1Q8IZH2 1706 aaKnown RBP16.15■□□□□ 0.18
SYNE1-222ENST00000474655 RRP1P56182 461 aaKnown RBP16.15■□□□□ 0.18
SYNE1-222ENST00000474655 CCDC146Q8IYE0 955 aa16.15■□□□□ 0.18
SYNE1-222ENST00000474655 NUDT16Q96DE0 195 aaKnown RBP16.15■□□□□ 0.18
SYNE1-222ENST00000474655 CCDC61Q9Y6R9 512 aa16.15■□□□□ 0.18
SYNE1-222ENST00000474655 PNPLA6Q8IY17 1366 aa16.15■□□□□ 0.18
SYNE1-222ENST00000474655 SLFN5Q08AF3 891 aa16.13■□□□□ 0.17
SYNE1-222ENST00000474655 RUNDC1Q96C34 613 aa16.13■□□□□ 0.17
SYNE1-222ENST00000474655 MAP2P11137 1827 aaKnown RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms