RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 TECPR2O15040 1411 aa13.12□□□□□ -0.31
USP39-214ENST00000474572 C3P01024 1663 aa13.12□□□□□ -0.31
USP39-214ENST00000474572 CD163L1Q9NR16 1453 aa13.11□□□□□ -0.31
USP39-214ENST00000474572 TNRQ92752 1358 aa13.11□□□□□ -0.31
USP39-214ENST00000474572 SLC12A5Q9H2X9 1139 aa13.11□□□□□ -0.31
USP39-214ENST00000474572 PPP4R2Q9NY27 417 aa13.11□□□□□ -0.31
USP39-214ENST00000474572 ZNF521Q96K83 1311 aa13.11□□□□□ -0.31
USP39-214ENST00000474572 NLRP1Q9C000 1473 aa13.1□□□□□ -0.31
USP39-214ENST00000474572 ABCC11Q96J66 1382 aa13.1□□□□□ -0.31
USP39-214ENST00000474572 ADAMTS8Q9UP79 889 aa13.1□□□□□ -0.31
USP39-214ENST00000474572 KIF20BQ96Q89 1820 aa13.1□□□□□ -0.31
USP39-214ENST00000474572 FER1L4A9Z1Z3 1794 aa13.09□□□□□ -0.31
USP39-214ENST00000474572 MLECQ14165 292 aa13.09□□□□□ -0.31
USP39-214ENST00000474572 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.09□□□□□ -0.31
USP39-214ENST00000474572 IRX6P78412 446 aaPredicted RBP13.08□□□□□ -0.32
USP39-214ENST00000474572 WDR43Q15061 677 aaKnown RBP eCLIP13.08□□□□□ -0.32
USP39-214ENST00000474572 STAG3Q9UJ98 1225 aa13.08□□□□□ -0.32
USP39-214ENST00000474572 A0A1W2PP64 1363 aa13.07□□□□□ -0.32
USP39-214ENST00000474572 PLEKHH1Q9ULM0 1364 aa13.07□□□□□ -0.32
USP39-214ENST00000474572 FAM135BQ49AJ0 1406 aa13.07□□□□□ -0.32
USP39-214ENST00000474572 PRAM1Q96QH2 718 aa13.07□□□□□ -0.32
USP39-214ENST00000474572 TSHZ2Q9NRE2 1034 aa13.07□□□□□ -0.32
USP39-214ENST00000474572 ATP7BP35670 1465 aa13.07□□□□□ -0.32
USP39-214ENST00000474572 CGNL1Q0VF96 1302 aa13.07□□□□□ -0.32
USP39-214ENST00000474572 ADGRB2O60241 1585 aa13.07□□□□□ -0.32
USP39-214ENST00000474572 IQSEC2Q5JU85 1478 aa13.06□□□□□ -0.32
USP39-214ENST00000474572 NGEFQ8N5V2 710 aa13.06□□□□□ -0.32
USP39-214ENST00000474572 SIRT1Q96EB6 747 aa13.06□□□□□ -0.32
USP39-214ENST00000474572 SLIT1O75093 1534 aa13.06□□□□□ -0.32
USP39-214ENST00000474572 TMEM2Q9UHN6 1383 aa13.06□□□□□ -0.32
USP39-214ENST00000474572 ARHGAP23Q9P227 1491 aa13.05□□□□□ -0.32
USP39-214ENST00000474572 ESF1Q9H501 851 aaKnown RBP13.05□□□□□ -0.32
USP39-214ENST00000474572 CABP2Q9NPB3 220 aa13.05□□□□□ -0.32
USP39-214ENST00000474572 MON2Q7Z3U7 1717 aa13.05□□□□□ -0.32
USP39-214ENST00000474572 MORC1Q86VD1 984 aa13.04□□□□□ -0.32
USP39-214ENST00000474572 STK26Q9P289 416 aa13.04□□□□□ -0.32
USP39-214ENST00000474572 AKAP12Q02952 1782 aa13.04□□□□□ -0.32
USP39-214ENST00000474572 ADAMTS13Q76LX8 1427 aa13.04□□□□□ -0.32
USP39-214ENST00000474572 COL3A1P02461 1466 aaPredicted RBP13.04□□□□□ -0.32
USP39-214ENST00000474572 RRP1P56182 461 aaKnown RBP13.03□□□□□ -0.32
USP39-214ENST00000474572 RCAN3Q9UKA8 241 aa13.03□□□□□ -0.32
USP39-214ENST00000474572 METP08581 1390 aa13.03□□□□□ -0.32
USP39-214ENST00000474572 SENP3-EIF4A1A0A087X0R7 540 aa13.02□□□□□ -0.33
USP39-214ENST00000474572 HDGFP51858 240 aaKnown RBP13.02□□□□□ -0.33
USP39-214ENST00000474572 CDCA7LQ96GN5 454 aa13.02□□□□□ -0.33
USP39-214ENST00000474572 POGKQ9P215 609 aa13.02□□□□□ -0.33
USP39-214ENST00000474572 MINK1Q8N4C8 1332 aaPredicted RBP13.02□□□□□ -0.33
USP39-214ENST00000474572 PLEKHG1Q9ULL1 1385 aa13.02□□□□□ -0.33
USP39-214ENST00000474572 CDC42BPGQ6DT37 1551 aa13.02□□□□□ -0.33
USP39-214ENST00000474572 TOPAZ1Q8N9V7 1692 aa13.02□□□□□ -0.33
USP39-214ENST00000474572 NCBP3Q53F19 620 aaKnown RBP13.01□□□□□ -0.33
USP39-214ENST00000474572 TRMT2AQ8IZ69 625 aaKnown RBP13.01□□□□□ -0.33
USP39-214ENST00000474572 DIP2AQ14689 1571 aa13.01□□□□□ -0.33
USP39-214ENST00000474572 ITSN1Q15811 1721 aa13□□□□□ -0.33
USP39-214ENST00000474572 SRPK2P78362 688 aaKnown RBP13□□□□□ -0.33
USP39-214ENST00000474572 DUSP27Q5VZP5 1158 aa13□□□□□ -0.33
USP39-214ENST00000474572 CDK19Q9BWU1 502 aa13□□□□□ -0.33
USP39-214ENST00000474572 TERF2IPQ9NYB0 399 aa13□□□□□ -0.33
USP39-214ENST00000474572 CPSF1Q10570 1443 aaKnown RBP12.99□□□□□ -0.33
USP39-214ENST00000474572 SAFB2Q14151 953 aaKnown RBP eCLIP12.99□□□□□ -0.33
USP39-214ENST00000474572 SALL2Q9Y467 1007 aaPredicted RBP12.99□□□□□ -0.33
USP39-214ENST00000474572 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.99□□□□□ -0.33
USP39-214ENST00000474572 NRKQ7Z2Y5 1582 aa12.98□□□□□ -0.33
USP39-214ENST00000474572 SLFN5Q08AF3 891 aa12.98□□□□□ -0.33
USP39-214ENST00000474572 RIMS1Q86UR5 1692 aaKnown RBP12.97□□□□□ -0.33
USP39-214ENST00000474572 GOLGA2Q08379 1002 aa12.97□□□□□ -0.33
USP39-214ENST00000474572 HDGFL2Q7Z4V5 671 aaPredicted RBP12.96□□□□□ -0.33
USP39-214ENST00000474572 WAPLQ7Z5K2 1190 aa12.96□□□□□ -0.33
USP39-214ENST00000474572 PHF23Q9BUL5 403 aaPredicted RBP12.96□□□□□ -0.33
USP39-214ENST00000474572 XRN1Q8IZH2 1706 aaKnown RBP12.96□□□□□ -0.34
USP39-214ENST00000474572 EDC4Q6P2E9 1401 aaKnown RBP12.96□□□□□ -0.34
USP39-214ENST00000474572 ZNF142P52746 1687 aaPredicted RBP12.96□□□□□ -0.34
USP39-214ENST00000474572 PNPLA6Q8IY17 1366 aa12.95□□□□□ -0.34
USP39-214ENST00000474572 WASLO00401 505 aaPredicted RBP12.95□□□□□ -0.34
USP39-214ENST00000474572 APAF1O14727 1248 aa12.95□□□□□ -0.34
USP39-214ENST00000474572 FYB1O15117 783 aa12.95□□□□□ -0.34
USP39-214ENST00000474572 MTHFSP49914 203 aa12.95□□□□□ -0.34
USP39-214ENST00000474572 B4GALNT3Q6L9W6 998 aa12.95□□□□□ -0.34
USP39-214ENST00000474572 CFAP53Q96M91 514 aa12.95□□□□□ -0.34
USP39-214ENST00000474572 NKTRP30414 1462 aaKnown RBP12.95□□□□□ -0.34
USP39-214ENST00000474572 CCDC146Q8IYE0 955 aa12.94□□□□□ -0.34
USP39-214ENST00000474572 RUNDC1Q96C34 613 aa12.94□□□□□ -0.34
USP39-214ENST00000474572 PTCH1Q13635 1447 aa12.94□□□□□ -0.34
USP39-214ENST00000474572 PPIP5K1Q6PFW1 1433 aa12.94□□□□□ -0.34
USP39-214ENST00000474572 CCDC27Q2M243 656 aa12.93□□□□□ -0.34
USP39-214ENST00000474572 CABP1Q9NZU7 370 aa12.93□□□□□ -0.34
USP39-214ENST00000474572 PTPRUQ92729 1446 aa12.93□□□□□ -0.34
USP39-214ENST00000474572 CEP170BQ9Y4F5 1589 aaPredicted RBP12.93□□□□□ -0.34
USP39-214ENST00000474572 ROBO2Q9HCK4 1378 aa12.93□□□□□ -0.34
USP39-214ENST00000474572 ADAMTSL3P82987 1691 aa12.93□□□□□ -0.34
USP39-214ENST00000474572 E9PSI1 815 aa12.92□□□□□ -0.34
USP39-214ENST00000474572 LTKP29376 864 aa12.92□□□□□ -0.34
USP39-214ENST00000474572 SENP3Q9H4L4 574 aaPredicted RBP12.92□□□□□ -0.34
USP39-214ENST00000474572 NALCNQ8IZF0 1738 aa12.91□□□□□ -0.34
USP39-214ENST00000474572 MAP2P11137 1827 aaKnown RBP12.91□□□□□ -0.34
USP39-214ENST00000474572 GGNBP2Q9H3C7 697 aa12.91□□□□□ -0.34
USP39-214ENST00000474572 SPINK5Q9NQ38 1064 aaPredicted RBP12.9□□□□□ -0.34
USP39-214ENST00000474572 AATKQ6ZMQ8 1374 aa12.9□□□□□ -0.34
USP39-214ENST00000474572 TNNT2P45379 298 aaPredicted RBP12.89□□□□□ -0.35
USP39-214ENST00000474572 CEBPAP49715 358 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms