RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 CEP170BQ9Y4F5 1589 aaPredicted RBP22.71■■□□□ 1.23
SMARCD3-206ENST00000470588 NUDCQ9Y266 331 aa22.7■■□□□ 1.22
SMARCD3-206ENST00000470588 PTPRMP28827 1452 aa22.69■■□□□ 1.22
SMARCD3-206ENST00000470588 ARHGAP23Q9P227 1491 aa22.69■■□□□ 1.22
SMARCD3-206ENST00000470588 DLC1Q96QB1 1528 aa22.69■■□□□ 1.22
SMARCD3-206ENST00000470588 PLEKHG1Q9ULL1 1385 aa22.69■■□□□ 1.22
SMARCD3-206ENST00000470588 ZNF142P52746 1687 aaPredicted RBP22.69■■□□□ 1.22
SMARCD3-206ENST00000470588 EVC2Q86UK5 1308 aa22.69■■□□□ 1.22
SMARCD3-206ENST00000470588 CARD14Q9BXL6 1004 aa22.68■■□□□ 1.22
SMARCD3-206ENST00000470588 TXNDC2Q86VQ3 553 aa22.67■■□□□ 1.22
SMARCD3-206ENST00000470588 POGKQ9P215 609 aa22.67■■□□□ 1.22
SMARCD3-206ENST00000470588 KNDC1Q76NI1 1749 aa22.66■■□□□ 1.22
SMARCD3-206ENST00000470588 SETD1BQ9UPS6 1966 aaKnown RBP22.65■■□□□ 1.22
SMARCD3-206ENST00000470588 PDE3BQ13370 1112 aa22.64■■□□□ 1.22
SMARCD3-206ENST00000470588 ABCC11Q96J66 1382 aa22.63■■□□□ 1.21
SMARCD3-206ENST00000470588 BLMP54132 1417 aaPredicted RBP22.62■■□□□ 1.21
SMARCD3-206ENST00000470588 PRAM1Q96QH2 718 aa22.62■■□□□ 1.21
SMARCD3-206ENST00000470588 SLC12A5Q9H2X9 1139 aa22.62■■□□□ 1.21
SMARCD3-206ENST00000470588 TULP4Q9NRJ4 1543 aa22.61■■□□□ 1.21
SMARCD3-206ENST00000470588 DIP2AQ14689 1571 aa22.61■■□□□ 1.21
SMARCD3-206ENST00000470588 LTKP29376 864 aa22.61■■□□□ 1.21
SMARCD3-206ENST00000470588 METP08581 1390 aa22.59■■□□□ 1.21
SMARCD3-206ENST00000470588 SAFB2Q14151 953 aaKnown RBP eCLIP22.59■■□□□ 1.21
SMARCD3-206ENST00000470588 ADAMTS13Q76LX8 1427 aa22.59■■□□□ 1.21
SMARCD3-206ENST00000470588 WDR43Q15061 677 aaKnown RBP eCLIP22.58■■□□□ 1.21
SMARCD3-206ENST00000470588 ADAMTS8Q9UP79 889 aa22.58■■□□□ 1.21
SMARCD3-206ENST00000470588 CPS1P31327 1500 aa22.58■■□□□ 1.21
SMARCD3-206ENST00000470588 TECPR2O15040 1411 aa22.57■■□□□ 1.2
SMARCD3-206ENST00000470588 RNF123Q5XPI4 1314 aa22.56■■□□□ 1.2
SMARCD3-206ENST00000470588 SIRT1Q96EB6 747 aa22.55■■□□□ 1.2
SMARCD3-206ENST00000470588 MINK1Q8N4C8 1332 aaPredicted RBP22.55■■□□□ 1.2
SMARCD3-206ENST00000470588 NINLQ9Y2I6 1382 aa22.55■■□□□ 1.2
SMARCD3-206ENST00000470588 FAM135BQ49AJ0 1406 aa22.55■■□□□ 1.2
SMARCD3-206ENST00000470588 NSD3Q9BZ95 1437 aa22.55■■□□□ 1.2
SMARCD3-206ENST00000470588 MED14O60244 1454 aa22.55■■□□□ 1.2
SMARCD3-206ENST00000470588 IRX6P78412 446 aaPredicted RBP22.54■■□□□ 1.2
SMARCD3-206ENST00000470588 SENP3-EIF4A1A0A087X0R7 540 aa22.53■■□□□ 1.2
SMARCD3-206ENST00000470588 SRPK2P78362 688 aaKnown RBP22.53■■□□□ 1.2
SMARCD3-206ENST00000470588 CABP2Q9NPB3 220 aa22.53■■□□□ 1.2
SMARCD3-206ENST00000470588 ATAD2Q6PL18 1390 aa22.53■■□□□ 1.2
SMARCD3-206ENST00000470588 ANKRD36BQ8N2N9 1353 aa22.53■■□□□ 1.2
SMARCD3-206ENST00000470588 MORC1Q86VD1 984 aa22.53■■□□□ 1.2
SMARCD3-206ENST00000470588 PPP4R2Q9NY27 417 aa22.53■■□□□ 1.2
SMARCD3-206ENST00000470588 TBX22Q9Y458 520 aa22.52■■□□□ 1.2
SMARCD3-206ENST00000470588 USP32Q8NFA0 1604 aa22.52■■□□□ 1.19
SMARCD3-206ENST00000470588 CGNL1Q0VF96 1302 aa22.51■■□□□ 1.19
SMARCD3-206ENST00000470588 ANKLE2Q86XL3 938 aa22.51■■□□□ 1.19
SMARCD3-206ENST00000470588 SALL2Q9Y467 1007 aaPredicted RBP22.5■■□□□ 1.19
SMARCD3-206ENST00000470588 WAPLQ7Z5K2 1190 aa22.49■■□□□ 1.19
SMARCD3-206ENST00000470588 SLC26A8Q96RN1 970 aa22.49■■□□□ 1.19
SMARCD3-206ENST00000470588 POLR3AO14802 1390 aaPredicted RBP22.49■■□□□ 1.19
SMARCD3-206ENST00000470588 NSD2O96028 1365 aa22.49■■□□□ 1.19
SMARCD3-206ENST00000470588 PLEKHH1Q9ULM0 1364 aa22.47■■□□□ 1.19
SMARCD3-206ENST00000470588 CDK19Q9BWU1 502 aa22.45■■□□□ 1.19
SMARCD3-206ENST00000470588 PIK3R4Q99570 1358 aa22.45■■□□□ 1.18
SMARCD3-206ENST00000470588 TERF2IPQ9NYB0 399 aa22.45■■□□□ 1.18
SMARCD3-206ENST00000470588 PTCH1Q13635 1447 aa22.43■■□□□ 1.18
SMARCD3-206ENST00000470588 NGEFQ8N5V2 710 aa22.43■■□□□ 1.18
SMARCD3-206ENST00000470588 ADGRB2O60241 1585 aa22.42■■□□□ 1.18
SMARCD3-206ENST00000470588 ROBO2Q9HCK4 1378 aa22.42■■□□□ 1.18
SMARCD3-206ENST00000470588 RCAN3Q9UKA8 241 aa22.42■■□□□ 1.18
SMARCD3-206ENST00000470588 PTPRUQ92729 1446 aa22.42■■□□□ 1.18
SMARCD3-206ENST00000470588 XRN1Q8IZH2 1706 aaKnown RBP22.42■■□□□ 1.18
SMARCD3-206ENST00000470588 CDCA7LQ96GN5 454 aa22.41■■□□□ 1.18
SMARCD3-206ENST00000470588 AMOTL2Q9Y2J4 779 aa22.41■■□□□ 1.18
SMARCD3-206ENST00000470588 WASLO00401 505 aaPredicted RBP22.4■■□□□ 1.18
SMARCD3-206ENST00000470588 A0A1W2PP64 1363 aa22.39■■□□□ 1.17
SMARCD3-206ENST00000470588 HDGFL2Q7Z4V5 671 aaPredicted RBP22.38■■□□□ 1.17
SMARCD3-206ENST00000470588 CFAP53Q96M91 514 aa22.38■■□□□ 1.17
SMARCD3-206ENST00000470588 ZNF521Q96K83 1311 aa22.37■■□□□ 1.17
SMARCD3-206ENST00000470588 NPHP4O75161 1426 aaPredicted RBP22.37■■□□□ 1.17
SMARCD3-206ENST00000470588 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.36■■□□□ 1.17
SMARCD3-206ENST00000470588 TSHZ2Q9NRE2 1034 aa22.36■■□□□ 1.17
SMARCD3-206ENST00000470588 ATP7BP35670 1465 aa22.36■■□□□ 1.17
SMARCD3-206ENST00000470588 MTHFSP49914 203 aa22.35■■□□□ 1.17
SMARCD3-206ENST00000470588 CHD2O14647 1828 aaKnown RBP22.35■■□□□ 1.17
SMARCD3-206ENST00000470588 TNNT2P45379 298 aaPredicted RBP22.35■■□□□ 1.17
SMARCD3-206ENST00000470588 RRP1P56182 461 aaKnown RBP22.34■■□□□ 1.17
SMARCD3-206ENST00000470588 GOLGA2Q08379 1002 aa22.34■■□□□ 1.17
SMARCD3-206ENST00000470588 CABP1Q9NZU7 370 aa22.34■■□□□ 1.17
SMARCD3-206ENST00000470588 CD163L1Q9NR16 1453 aa22.33■■□□□ 1.17
SMARCD3-206ENST00000470588 CCDC146Q8IYE0 955 aa22.33■■□□□ 1.17
SMARCD3-206ENST00000470588 APAF1O14727 1248 aa22.33■■□□□ 1.16
SMARCD3-206ENST00000470588 PPIP5K1Q6PFW1 1433 aa22.31■■□□□ 1.16
SMARCD3-206ENST00000470588 FYB1O15117 783 aa22.31■■□□□ 1.16
SMARCD3-206ENST00000470588 ITSN1Q15811 1721 aa22.3■■□□□ 1.16
SMARCD3-206ENST00000470588 NUDT16Q96DE0 195 aaKnown RBP22.3■■□□□ 1.16
SMARCD3-206ENST00000470588 SLFN5Q08AF3 891 aa22.3■■□□□ 1.16
SMARCD3-206ENST00000470588 DUSP27Q5VZP5 1158 aa22.29■■□□□ 1.16
SMARCD3-206ENST00000470588 ANKRD26Q9UPS8 1709 aa22.29■■□□□ 1.16
SMARCD3-206ENST00000470588 KIF20BQ96Q89 1820 aa22.29■■□□□ 1.16
SMARCD3-206ENST00000470588 CDC42BPGQ6DT37 1551 aa22.28■■□□□ 1.16
SMARCD3-206ENST00000470588 TRMT2AQ8IZ69 625 aaKnown RBP22.28■■□□□ 1.16
SMARCD3-206ENST00000470588 RUNDC1Q96C34 613 aa22.28■■□□□ 1.16
SMARCD3-206ENST00000470588 CCDC61Q9Y6R9 512 aa22.28■■□□□ 1.16
SMARCD3-206ENST00000470588 KCNA6P17658 529 aa22.27■■□□□ 1.16
SMARCD3-206ENST00000470588 B4GALNT3Q6L9W6 998 aa22.27■■□□□ 1.16
SMARCD3-206ENST00000470588 GGNBP2Q9H3C7 697 aa22.27■■□□□ 1.16
SMARCD3-206ENST00000470588 SHPRHQ149N8 1683 aa22.27■■□□□ 1.16
SMARCD3-206ENST00000470588 TOPAZ1Q8N9V7 1692 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms