RNA–Protein interactions for RNA: ENST00000469529.6

TRAF4-208, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-208ENST00000469529 PTPRUQ92729 1446 aa17.66■□□□□ 0.42
TRAF4-208ENST00000469529 EVC2Q86UK5 1308 aa17.66■□□□□ 0.42
TRAF4-208ENST00000469529 TOM1O60784 492 aa17.65■□□□□ 0.42
TRAF4-208ENST00000469529 PTCH1Q13635 1447 aa17.64■□□□□ 0.42
TRAF4-208ENST00000469529 LRRC7Q96NW7 1537 aa17.64■□□□□ 0.41
TRAF4-208ENST00000469529 KCNA6P17658 529 aa17.64■□□□□ 0.41
TRAF4-208ENST00000469529 ROBO2Q9HCK4 1378 aa17.64■□□□□ 0.41
TRAF4-208ENST00000469529 WAPLQ7Z5K2 1190 aa17.63■□□□□ 0.41
TRAF4-208ENST00000469529 SENP3Q9H4L4 574 aaPredicted RBP17.63■□□□□ 0.41
TRAF4-208ENST00000469529 ARHGEF28Q8N1W1 1705 aaKnown RBP17.61■□□□□ 0.41
TRAF4-208ENST00000469529 SCAF1Q9H7N4 1312 aaKnown RBP17.61■□□□□ 0.41
TRAF4-208ENST00000469529 KNDC1Q76NI1 1749 aa17.61■□□□□ 0.41
TRAF4-208ENST00000469529 PIP4K2BP78356 416 aa17.6■□□□□ 0.41
TRAF4-208ENST00000469529 PLEKHH1Q9ULM0 1364 aa17.59■□□□□ 0.41
TRAF4-208ENST00000469529 PER1O15534 1290 aaPredicted RBP17.59■□□□□ 0.41
TRAF4-208ENST00000469529 NINLQ9Y2I6 1382 aa17.58■□□□□ 0.4
TRAF4-208ENST00000469529 WASLO00401 505 aaPredicted RBP17.58■□□□□ 0.4
TRAF4-208ENST00000469529 CDK19Q9BWU1 502 aa17.57■□□□□ 0.4
TRAF4-208ENST00000469529 ATAD2Q6PL18 1390 aa17.56■□□□□ 0.4
TRAF4-208ENST00000469529 MINK1Q8N4C8 1332 aaPredicted RBP17.56■□□□□ 0.4
TRAF4-208ENST00000469529 XRN1Q8IZH2 1706 aaKnown RBP17.55■□□□□ 0.4
TRAF4-208ENST00000469529 SAFB2Q14151 953 aaKnown RBP eCLIP17.55■□□□□ 0.4
TRAF4-208ENST00000469529 TULP4Q9NRJ4 1543 aa17.55■□□□□ 0.4
TRAF4-208ENST00000469529 QRICH2Q9H0J4 1663 aa17.55■□□□□ 0.4
TRAF4-208ENST00000469529 PANK3Q9H999 370 aa17.54■□□□□ 0.4
TRAF4-208ENST00000469529 NCOA3Q9Y6Q9 1424 aa17.54■□□□□ 0.4
TRAF4-208ENST00000469529 PROSER2Q86WR7 435 aaPredicted RBP17.53■□□□□ 0.4
TRAF4-208ENST00000469529 POLR3GLQ9BT43 218 aa17.53■□□□□ 0.4
TRAF4-208ENST00000469529 XIRP1Q702N8 1843 aaKnown RBP17.53■□□□□ 0.4
TRAF4-208ENST00000469529 NWD1Q149M9 1564 aa17.53■□□□□ 0.4
TRAF4-208ENST00000469529 TMEM94Q12767 1356 aa17.53■□□□□ 0.4
TRAF4-208ENST00000469529 CHD2O14647 1828 aaKnown RBP17.52■□□□□ 0.4
TRAF4-208ENST00000469529 HSPA1LP34931 641 aa17.52■□□□□ 0.4
TRAF4-208ENST00000469529 SRPK2P78362 688 aaKnown RBP17.52■□□□□ 0.4
TRAF4-208ENST00000469529 CABP2Q9NPB3 220 aa17.52■□□□□ 0.4
TRAF4-208ENST00000469529 NKTRP30414 1462 aaKnown RBP17.51■□□□□ 0.39
TRAF4-208ENST00000469529 ANP32CO43423 234 aa17.51■□□□□ 0.39
TRAF4-208ENST00000469529 MIER1Q8N108 512 aa17.51■□□□□ 0.39
TRAF4-208ENST00000469529 NPC1L1Q9UHC9 1359 aa17.51■□□□□ 0.39
TRAF4-208ENST00000469529 ADGRB2O60241 1585 aa17.5■□□□□ 0.39
TRAF4-208ENST00000469529 SLC12A5Q9H2X9 1139 aa17.5■□□□□ 0.39
TRAF4-208ENST00000469529 CCDC61Q9Y6R9 512 aa17.5■□□□□ 0.39
TRAF4-208ENST00000469529 KTN1Q86UP2 1357 aaKnown RBP17.5■□□□□ 0.39
TRAF4-208ENST00000469529 PLEKHG3A1L390 1219 aa17.48■□□□□ 0.39
TRAF4-208ENST00000469529 NUDT16Q96DE0 195 aaKnown RBP17.48■□□□□ 0.39
TRAF4-208ENST00000469529 RBM33Q96EV2 1170 aaKnown RBP17.48■□□□□ 0.39
TRAF4-208ENST00000469529 PRKRIP1Q9H875 184 aaPredicted RBP17.47■□□□□ 0.39
TRAF4-208ENST00000469529 TERF2IPQ9NYB0 399 aa17.47■□□□□ 0.39
TRAF4-208ENST00000469529 ANKRD36BQ8N2N9 1353 aa17.46■□□□□ 0.39
TRAF4-208ENST00000469529 CCER2I3L3R5 266 aa17.46■□□□□ 0.39
TRAF4-208ENST00000469529 CARD14Q9BXL6 1004 aa17.46■□□□□ 0.39
TRAF4-208ENST00000469529 KNSTRNQ9Y448 316 aa17.46■□□□□ 0.39
TRAF4-208ENST00000469529 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.46■□□□□ 0.39
TRAF4-208ENST00000469529 RALBP1Q15311 655 aa17.45■□□□□ 0.38
TRAF4-208ENST00000469529 TMC1Q8TDI8 760 aa17.45■□□□□ 0.38
TRAF4-208ENST00000469529 ZNF692Q9BU19 519 aaPredicted RBP17.45■□□□□ 0.38
TRAF4-208ENST00000469529 C19orf44Q9H6X5 657 aa17.45■□□□□ 0.38
TRAF4-208ENST00000469529 AMER1Q5JTC6 1135 aaPredicted RBP17.44■□□□□ 0.38
TRAF4-208ENST00000469529 CABP1Q9NZU7 370 aa17.44■□□□□ 0.38
TRAF4-208ENST00000469529 ANKARQ7Z5J8 1434 aa17.44■□□□□ 0.38
TRAF4-208ENST00000469529 ADGRL3Q9HAR2 1447 aa17.44■□□□□ 0.38
TRAF4-208ENST00000469529 MSH6P52701 1360 aa17.43■□□□□ 0.38
TRAF4-208ENST00000469529 PRR36Q9H6K5 1346 aa17.43■□□□□ 0.38
TRAF4-208ENST00000469529 CPSF1Q10570 1443 aaKnown RBP17.41■□□□□ 0.38
TRAF4-208ENST00000469529 HDGFL2Q7Z4V5 671 aaPredicted RBP17.41■□□□□ 0.38
TRAF4-208ENST00000469529 ATP7BP35670 1465 aa17.41■□□□□ 0.38
TRAF4-208ENST00000469529 MYOM1P52179 1685 aa17.4■□□□□ 0.38
TRAF4-208ENST00000469529 CD163L1Q9NR16 1453 aa17.4■□□□□ 0.38
TRAF4-208ENST00000469529 C14orf37Q86TY3 774 aa17.39■□□□□ 0.37
TRAF4-208ENST00000469529 PARD3Q8TEW0 1356 aa17.39■□□□□ 0.37
TRAF4-208ENST00000469529 DCCP43146 1447 aa17.38■□□□□ 0.37
TRAF4-208ENST00000469529 CDC42BPGQ6DT37 1551 aa17.38■□□□□ 0.37
TRAF4-208ENST00000469529 A0A1W2PP64 1363 aa17.38■□□□□ 0.37
TRAF4-208ENST00000469529 PPIP5K1Q6PFW1 1433 aa17.38■□□□□ 0.37
TRAF4-208ENST00000469529 CGNL1Q0VF96 1302 aa17.37■□□□□ 0.37
TRAF4-208ENST00000469529 NSD2O96028 1365 aa17.37■□□□□ 0.37
TRAF4-208ENST00000469529 SLAIN2Q9P270 581 aa17.36■□□□□ 0.37
TRAF4-208ENST00000469529 POLR3AO14802 1390 aaPredicted RBP17.36■□□□□ 0.37
TRAF4-208ENST00000469529 BRD4O60885 1362 aaPredicted RBP17.35■□□□□ 0.37
TRAF4-208ENST00000469529 ROBO1Q9Y6N7 1651 aa17.35■□□□□ 0.37
TRAF4-208ENST00000469529 MED1Q15648 1581 aaPredicted RBP17.34■□□□□ 0.37
TRAF4-208ENST00000469529 ILDR2Q71H61 639 aa17.34■□□□□ 0.37
TRAF4-208ENST00000469529 CADPS2Q86UW7 1296 aa17.34■□□□□ 0.37
TRAF4-208ENST00000469529 NSD3Q9BZ95 1437 aa17.33■□□□□ 0.36
TRAF4-208ENST00000469529 ACEP12821 1306 aa17.33■□□□□ 0.36
TRAF4-208ENST00000469529 EDC4Q6P2E9 1401 aaKnown RBP17.32■□□□□ 0.36
TRAF4-208ENST00000469529 MYBBP1AQ9BQG0 1328 aaKnown RBP17.32■□□□□ 0.36
TRAF4-208ENST00000469529 FYB1O15117 783 aa17.32■□□□□ 0.36
TRAF4-208ENST00000469529 ATF3P18847 181 aa17.32■□□□□ 0.36
TRAF4-208ENST00000469529 SSH2Q76I76 1423 aa17.31■□□□□ 0.36
TRAF4-208ENST00000469529 CC2D1BQ5T0F9 858 aaKnown RBP17.31■□□□□ 0.36
TRAF4-208ENST00000469529 USP32Q8NFA0 1604 aa17.31■□□□□ 0.36
TRAF4-208ENST00000469529 NLRP13Q86W25 1043 aa17.3■□□□□ 0.36
TRAF4-208ENST00000469529 PHF8Q9UPP1 1060 aa17.3■□□□□ 0.36
TRAF4-208ENST00000469529 FMN2Q9NZ56 1722 aa17.3■□□□□ 0.36
TRAF4-208ENST00000469529 TTC21AQ8NDW8 1320 aa17.28■□□□□ 0.36
TRAF4-208ENST00000469529 NALCNQ8IZF0 1738 aa17.28■□□□□ 0.36
TRAF4-208ENST00000469529 NGDNQ8NEJ9 315 aaKnown RBP17.28■□□□□ 0.36
TRAF4-208ENST00000469529 TTC21BQ7Z4L5 1316 aa17.27■□□□□ 0.36
TRAF4-208ENST00000469529 TOPAZ1Q8N9V7 1692 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms