RNA–Protein interactions for RNA: ENST00000469129.1

SMC1A-205, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-205ENST00000469129 HNRNPUQ00839 825 aaKnown RBP eCLIP12.65□□□□□ -0.38
SMC1A-205ENST00000469129 TMC1Q8TDI8 760 aa12.65□□□□□ -0.38
SMC1A-205ENST00000469129 INSRP06213 1382 aa12.65□□□□□ -0.38
SMC1A-205ENST00000469129 SCAF1Q9H7N4 1312 aaKnown RBP12.64□□□□□ -0.39
SMC1A-205ENST00000469129 FAM135BQ49AJ0 1406 aa12.64□□□□□ -0.39
SMC1A-205ENST00000469129 ABCC11Q96J66 1382 aa12.64□□□□□ -0.39
SMC1A-205ENST00000469129 CCDC184Q52MB2 194 aa12.63□□□□□ -0.39
SMC1A-205ENST00000469129 FAM9BQ8IZU0 186 aa12.63□□□□□ -0.39
SMC1A-205ENST00000469129 NSD2O96028 1365 aa12.63□□□□□ -0.39
SMC1A-205ENST00000469129 AKAP12Q02952 1782 aa12.63□□□□□ -0.39
SMC1A-205ENST00000469129 ZBED9Q6R2W3 1325 aa12.62□□□□□ -0.39
SMC1A-205ENST00000469129 XRN1Q8IZH2 1706 aaKnown RBP12.62□□□□□ -0.39
SMC1A-205ENST00000469129 TOPAZ1Q8N9V7 1692 aa12.62□□□□□ -0.39
SMC1A-205ENST00000469129 ANKRD36BQ8N2N9 1353 aa12.62□□□□□ -0.39
SMC1A-205ENST00000469129 POGKQ9P215 609 aa12.62□□□□□ -0.39
SMC1A-205ENST00000469129 GTF3C3Q9Y5Q9 886 aa12.62□□□□□ -0.39
SMC1A-205ENST00000469129 MON2Q7Z3U7 1717 aa12.62□□□□□ -0.39
SMC1A-205ENST00000469129 NSD3Q9BZ95 1437 aa12.62□□□□□ -0.39
SMC1A-205ENST00000469129 CNGB1Q14028 1251 aaPredicted RBP12.61□□□□□ -0.39
SMC1A-205ENST00000469129 CC2D1BQ5T0F9 858 aaKnown RBP12.61□□□□□ -0.39
SMC1A-205ENST00000469129 STK26Q9P289 416 aa12.61□□□□□ -0.39
SMC1A-205ENST00000469129 EID1Q9Y6B2 187 aa12.61□□□□□ -0.39
SMC1A-205ENST00000469129 ADAMTS13Q76LX8 1427 aa12.61□□□□□ -0.39
SMC1A-205ENST00000469129 MED14O60244 1454 aa12.6□□□□□ -0.39
SMC1A-205ENST00000469129 ATP7BP35670 1465 aa12.6□□□□□ -0.39
SMC1A-205ENST00000469129 AMER1Q5JTC6 1135 aaPredicted RBP12.6□□□□□ -0.39
SMC1A-205ENST00000469129 PRAM1Q96QH2 718 aa12.6□□□□□ -0.39
SMC1A-205ENST00000469129 STRCQ7RTU9 1775 aa12.6□□□□□ -0.39
SMC1A-205ENST00000469129 THEMISQ8N1K5 641 aaPredicted RBP12.59□□□□□ -0.39
SMC1A-205ENST00000469129 SIRT1Q96EB6 747 aa12.59□□□□□ -0.39
SMC1A-205ENST00000469129 BLMP54132 1417 aaPredicted RBP12.58□□□□□ -0.4
SMC1A-205ENST00000469129 PTCH1Q13635 1447 aa12.58□□□□□ -0.4
SMC1A-205ENST00000469129 PNISRQ8TF01 805 aaKnown RBP12.58□□□□□ -0.4
SMC1A-205ENST00000469129 METP08581 1390 aa12.57□□□□□ -0.4
SMC1A-205ENST00000469129 CDC42BPGQ6DT37 1551 aa12.57□□□□□ -0.4
SMC1A-205ENST00000469129 SRPK2P78362 688 aaKnown RBP12.57□□□□□ -0.4
SMC1A-205ENST00000469129 CHD2O14647 1828 aaKnown RBP12.57□□□□□ -0.4
SMC1A-205ENST00000469129 SHPRHQ149N8 1683 aa12.57□□□□□ -0.4
SMC1A-205ENST00000469129 CGNL1Q0VF96 1302 aa12.57□□□□□ -0.4
SMC1A-205ENST00000469129 MINK1Q8N4C8 1332 aaPredicted RBP12.57□□□□□ -0.4
SMC1A-205ENST00000469129 BCANQ96GW7 911 aa12.56□□□□□ -0.4
SMC1A-205ENST00000469129 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.56□□□□□ -0.4
SMC1A-205ENST00000469129 PPP2R1AP30153 589 aa12.55□□□□□ -0.4
SMC1A-205ENST00000469129 SAFB2Q14151 953 aaKnown RBP eCLIP12.55□□□□□ -0.4
SMC1A-205ENST00000469129 PIK3R4Q99570 1358 aa12.55□□□□□ -0.4
SMC1A-205ENST00000469129 TXNDC2Q86VQ3 553 aa12.54□□□□□ -0.4
SMC1A-205ENST00000469129 TERF2IPQ9NYB0 399 aa12.54□□□□□ -0.4
SMC1A-205ENST00000469129 DMRT2Q9Y5R5 561 aa12.54□□□□□ -0.4
SMC1A-205ENST00000469129 NRKQ7Z2Y5 1582 aa12.54□□□□□ -0.4
SMC1A-205ENST00000469129 A0A1W2PP64 1363 aa12.54□□□□□ -0.4
SMC1A-205ENST00000469129 SENP3Q9H4L4 574 aaPredicted RBP12.53□□□□□ -0.4
SMC1A-205ENST00000469129 CABP2Q9NPB3 220 aa12.53□□□□□ -0.4
SMC1A-205ENST00000469129 PLEKHH1Q9ULM0 1364 aa12.53□□□□□ -0.4
SMC1A-205ENST00000469129 CD163L1Q9NR16 1453 aa12.53□□□□□ -0.4
SMC1A-205ENST00000469129 FMN2Q9NZ56 1722 aa12.52□□□□□ -0.41
SMC1A-205ENST00000469129 NEFLP07196 543 aa12.52□□□□□ -0.41
SMC1A-205ENST00000469129 HDGFL2Q7Z4V5 671 aaPredicted RBP12.52□□□□□ -0.41
SMC1A-205ENST00000469129 CARD14Q9BXL6 1004 aa12.52□□□□□ -0.41
SMC1A-205ENST00000469129 SLC12A5Q9H2X9 1139 aa12.52□□□□□ -0.41
SMC1A-205ENST00000469129 LTKP29376 864 aa12.51□□□□□ -0.41
SMC1A-205ENST00000469129 CDK19Q9BWU1 502 aa12.51□□□□□ -0.41
SMC1A-205ENST00000469129 TBX22Q9Y458 520 aa12.51□□□□□ -0.41
SMC1A-205ENST00000469129 NCKAP5LQ9HCH0 1330 aa12.51□□□□□ -0.41
SMC1A-205ENST00000469129 POLR3AO14802 1390 aaPredicted RBP12.51□□□□□ -0.41
SMC1A-205ENST00000469129 WDR43Q15061 677 aaKnown RBP eCLIP12.5□□□□□ -0.41
SMC1A-205ENST00000469129 PPIP5K1Q6PFW1 1433 aa12.5□□□□□ -0.41
SMC1A-205ENST00000469129 SMG6Q86US8 1419 aaKnown RBP12.5□□□□□ -0.41
SMC1A-205ENST00000469129 NALCNQ8IZF0 1738 aa12.5□□□□□ -0.41
SMC1A-205ENST00000469129 NWD1Q149M9 1564 aa12.49□□□□□ -0.41
SMC1A-205ENST00000469129 PTPRUQ92729 1446 aa12.49□□□□□ -0.41
SMC1A-205ENST00000469129 ROBO2Q9HCK4 1378 aa12.49□□□□□ -0.41
SMC1A-205ENST00000469129 WASLO00401 505 aaPredicted RBP12.49□□□□□ -0.41
SMC1A-205ENST00000469129 MORC1Q86VD1 984 aa12.49□□□□□ -0.41
SMC1A-205ENST00000469129 RGPD8O14715 1765 aaPredicted RBP12.48□□□□□ -0.41
SMC1A-205ENST00000469129 EDC4Q6P2E9 1401 aaKnown RBP12.48□□□□□ -0.41
SMC1A-205ENST00000469129 WAPLQ7Z5K2 1190 aa12.48□□□□□ -0.41
SMC1A-205ENST00000469129 MAP2P11137 1827 aaKnown RBP12.47□□□□□ -0.41
SMC1A-205ENST00000469129 CPSF1Q10570 1443 aaKnown RBP12.46□□□□□ -0.41
SMC1A-205ENST00000469129 CFAP53Q96M91 514 aa12.46□□□□□ -0.41
SMC1A-205ENST00000469129 USP54Q70EL1 1684 aa12.45□□□□□ -0.42
SMC1A-205ENST00000469129 PDE3BQ13370 1112 aa12.45□□□□□ -0.42
SMC1A-205ENST00000469129 ANKLE2Q86XL3 938 aa12.45□□□□□ -0.42
SMC1A-205ENST00000469129 ANKARQ7Z5J8 1434 aa12.45□□□□□ -0.42
SMC1A-205ENST00000469129 SLC26A8Q96RN1 970 aa12.44□□□□□ -0.42
SMC1A-205ENST00000469129 NUDCQ9Y266 331 aa12.44□□□□□ -0.42
SMC1A-205ENST00000469129 NPHP4O75161 1426 aaPredicted RBP12.44□□□□□ -0.42
SMC1A-205ENST00000469129 NGEFQ8N5V2 710 aa12.43□□□□□ -0.42
SMC1A-205ENST00000469129 AMOTL2Q9Y2J4 779 aa12.43□□□□□ -0.42
SMC1A-205ENST00000469129 LTBP4Q8N2S1 1624 aa12.42□□□□□ -0.42
SMC1A-205ENST00000469129 ILDR1Q86SU0 546 aaPredicted RBP12.42□□□□□ -0.42
SMC1A-205ENST00000469129 CERKQ8TCT0 537 aa12.42□□□□□ -0.42
SMC1A-205ENST00000469129 NUDT16Q96DE0 195 aaKnown RBP12.42□□□□□ -0.42
SMC1A-205ENST00000469129 CABP1Q9NZU7 370 aa12.42□□□□□ -0.42
SMC1A-205ENST00000469129 CCDC61Q9Y6R9 512 aa12.42□□□□□ -0.42
SMC1A-205ENST00000469129 LRRC7Q96NW7 1537 aa12.42□□□□□ -0.42
SMC1A-205ENST00000469129 COL3A1P02461 1466 aaPredicted RBP12.41□□□□□ -0.42
SMC1A-205ENST00000469129 NKTRP30414 1462 aaKnown RBP12.41□□□□□ -0.42
SMC1A-205ENST00000469129 SUPT16HQ9Y5B9 1047 aaKnown RBP12.41□□□□□ -0.42
SMC1A-205ENST00000469129 ZNF335Q9H4Z2 1342 aaPredicted RBP12.4□□□□□ -0.42
SMC1A-205ENST00000469129 ZNF692Q9BU19 519 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms