RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 ZNF142P52746 1687 aaPredicted RBP25.81■■□□□ 1.72
SMC4-209ENST00000468653 MYBBP1AQ9BQG0 1328 aaKnown RBP25.81■■□□□ 1.72
SMC4-209ENST00000468653 SRPK2P78362 688 aaKnown RBP25.81■■□□□ 1.72
SMC4-209ENST00000468653 SIRT1Q96EB6 747 aa25.81■■□□□ 1.72
SMC4-209ENST00000468653 MED14O60244 1454 aa25.81■■□□□ 1.72
SMC4-209ENST00000468653 PARD3Q8TEW0 1356 aa25.8■■□□□ 1.72
SMC4-209ENST00000468653 TBX22Q9Y458 520 aa25.79■■□□□ 1.72
SMC4-209ENST00000468653 TECPR2O15040 1411 aa25.79■■□□□ 1.72
SMC4-209ENST00000468653 PLEKHH1Q9ULM0 1364 aa25.79■■□□□ 1.72
SMC4-209ENST00000468653 SLC12A5Q9H2X9 1139 aa25.79■■□□□ 1.72
SMC4-209ENST00000468653 KNDC1Q76NI1 1749 aa25.79■■□□□ 1.72
SMC4-209ENST00000468653 ANKLE2Q86XL3 938 aa25.78■■□□□ 1.72
SMC4-209ENST00000468653 FAM135BQ49AJ0 1406 aa25.78■■□□□ 1.72
SMC4-209ENST00000468653 AMER1Q5JTC6 1135 aaPredicted RBP25.76■■□□□ 1.71
SMC4-209ENST00000468653 CDK19Q9BWU1 502 aa25.76■■□□□ 1.71
SMC4-209ENST00000468653 CPS1P31327 1500 aa25.76■■□□□ 1.71
SMC4-209ENST00000468653 ATAD2Q6PL18 1390 aa25.75■■□□□ 1.71
SMC4-209ENST00000468653 CARD14Q9BXL6 1004 aa25.74■■□□□ 1.71
SMC4-209ENST00000468653 DIP2AQ14689 1571 aa25.74■■□□□ 1.71
SMC4-209ENST00000468653 NPC1L1Q9UHC9 1359 aa25.72■■□□□ 1.71
SMC4-209ENST00000468653 NINLQ9Y2I6 1382 aa25.72■■□□□ 1.71
SMC4-209ENST00000468653 FAM9BQ8IZU0 186 aa25.72■■□□□ 1.71
SMC4-209ENST00000468653 BRD4O60885 1362 aaPredicted RBP25.72■■□□□ 1.71
SMC4-209ENST00000468653 ROBO2Q9HCK4 1378 aa25.71■■□□□ 1.71
SMC4-209ENST00000468653 NLRP13Q86W25 1043 aa25.71■■□□□ 1.71
SMC4-209ENST00000468653 PTPRUQ92729 1446 aa25.71■■□□□ 1.71
SMC4-209ENST00000468653 AMOTL2Q9Y2J4 779 aa25.7■■□□□ 1.7
SMC4-209ENST00000468653 ANKRD36BQ8N2N9 1353 aa25.68■■□□□ 1.7
SMC4-209ENST00000468653 NSD3Q9BZ95 1437 aa25.68■■□□□ 1.7
SMC4-209ENST00000468653 WASLO00401 505 aaPredicted RBP25.67■■□□□ 1.7
SMC4-209ENST00000468653 PIK3R4Q99570 1358 aa25.64■■□□□ 1.7
SMC4-209ENST00000468653 TERF2IPQ9NYB0 399 aa25.64■■□□□ 1.69
SMC4-209ENST00000468653 HNRNPUQ00839 825 aaKnown RBP eCLIP25.62■■□□□ 1.692e-22■■■■■ 68.1
SMC4-209ENST00000468653 PTCH1Q13635 1447 aa25.62■■□□□ 1.69
SMC4-209ENST00000468653 PNISRQ8TF01 805 aaKnown RBP25.61■■□□□ 1.69
SMC4-209ENST00000468653 CABP1Q9NZU7 370 aa25.61■■□□□ 1.69
SMC4-209ENST00000468653 CGNL1Q0VF96 1302 aa25.61■■□□□ 1.69
SMC4-209ENST00000468653 PPP2R1AP30153 589 aa25.6■■□□□ 1.69
SMC4-209ENST00000468653 HDGFL2Q7Z4V5 671 aaPredicted RBP25.6■■□□□ 1.69
SMC4-209ENST00000468653 A0A1W2PP64 1363 aa25.6■■□□□ 1.69
SMC4-209ENST00000468653 NPHP4O75161 1426 aaPredicted RBP25.59■■□□□ 1.69
SMC4-209ENST00000468653 USP32Q8NFA0 1604 aa25.57■■□□□ 1.68
SMC4-209ENST00000468653 KCNA6P17658 529 aa25.56■■□□□ 1.68
SMC4-209ENST00000468653 NUDT16Q96DE0 195 aaKnown RBP25.56■■□□□ 1.68
SMC4-209ENST00000468653 XRN1Q8IZH2 1706 aaKnown RBP25.56■■□□□ 1.68
SMC4-209ENST00000468653 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.56■■□□□ 1.68
SMC4-209ENST00000468653 NCKAP5LQ9HCH0 1330 aa25.56■■□□□ 1.68
SMC4-209ENST00000468653 ADGRB2O60241 1585 aa25.56■■□□□ 1.68
SMC4-209ENST00000468653 MORC1Q86VD1 984 aa25.55■■□□□ 1.68
SMC4-209ENST00000468653 CD163L1Q9NR16 1453 aa25.54■■□□□ 1.68
SMC4-209ENST00000468653 KDM4FA0A1W2PPD8 638 aa25.54■■□□□ 1.68
SMC4-209ENST00000468653 CCDC61Q9Y6R9 512 aa25.54■■□□□ 1.68
SMC4-209ENST00000468653 NSD2O96028 1365 aa25.53■■□□□ 1.68
SMC4-209ENST00000468653 PPIP5K1Q6PFW1 1433 aa25.53■■□□□ 1.68
SMC4-209ENST00000468653 ATP7BP35670 1465 aa25.53■■□□□ 1.68
SMC4-209ENST00000468653 CHD2O14647 1828 aaKnown RBP25.49■■□□□ 1.67
SMC4-209ENST00000468653 PRR36Q9H6K5 1346 aa25.48■■□□□ 1.67
SMC4-209ENST00000468653 NUTM2FA1L443 756 aa25.46■■□□□ 1.67
SMC4-209ENST00000468653 TNNT2P45379 298 aaPredicted RBP25.46■■□□□ 1.67
SMC4-209ENST00000468653 CPSF1Q10570 1443 aaKnown RBP25.44■■□□□ 1.66
SMC4-209ENST00000468653 FYB1O15117 783 aa25.44■■□□□ 1.66
SMC4-209ENST00000468653 GGNBP2Q9H3C7 697 aa25.44■■□□□ 1.66
SMC4-209ENST00000468653 CDC42BPGQ6DT37 1551 aa25.43■■□□□ 1.66
SMC4-209ENST00000468653 ZBED9Q6R2W3 1325 aa25.42■■□□□ 1.66
SMC4-209ENST00000468653 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.41■■□□□ 1.666e-65■■■■■ 143.5
SMC4-209ENST00000468653 ZNF692Q9BU19 519 aaPredicted RBP25.41■■□□□ 1.66
SMC4-209ENST00000468653 WDR43Q15061 677 aaKnown RBP eCLIP25.41■■□□□ 1.665e-20■■■■■ 85.2
SMC4-209ENST00000468653 EDC4Q6P2E9 1401 aaKnown RBP25.41■■□□□ 1.66
SMC4-209ENST00000468653 HSPA2P54652 639 aa25.4■■□□□ 1.66
SMC4-209ENST00000468653 PLEKHG3A1L390 1219 aa25.39■■□□□ 1.66
SMC4-209ENST00000468653 TOPAZ1Q8N9V7 1692 aa25.38■■□□□ 1.65
SMC4-209ENST00000468653 INSRP06213 1382 aa25.36■■□□□ 1.65
SMC4-209ENST00000468653 ACEP12821 1306 aa25.36■■□□□ 1.65
SMC4-209ENST00000468653 POLR3AO14802 1390 aaPredicted RBP25.36■■□□□ 1.65
SMC4-209ENST00000468653 ITSN1Q15811 1721 aa25.36■■□□□ 1.65
SMC4-209ENST00000468653 KIF20BQ96Q89 1820 aa25.35■■□□□ 1.65
SMC4-209ENST00000468653 RBM33Q96EV2 1170 aaKnown RBP25.35■■□□□ 1.65
SMC4-209ENST00000468653 ADAMTS8Q9UP79 889 aa25.35■■□□□ 1.65
SMC4-209ENST00000468653 ANKARQ7Z5J8 1434 aa25.35■■□□□ 1.65
SMC4-209ENST00000468653 ANKRD26Q9UPS8 1709 aa25.35■■□□□ 1.65
SMC4-209ENST00000468653 MTHFSP49914 203 aa25.34■■□□□ 1.65
SMC4-209ENST00000468653 GTF3C3Q9Y5Q9 886 aa25.34■■□□□ 1.65
SMC4-209ENST00000468653 AKAP12Q02952 1782 aa25.34■■□□□ 1.65
SMC4-209ENST00000468653 NWD1Q149M9 1564 aa25.34■■□□□ 1.65
SMC4-209ENST00000468653 MON2Q7Z3U7 1717 aa25.33■■□□□ 1.65
SMC4-209ENST00000468653 C14orf37Q86TY3 774 aa25.33■■□□□ 1.65
SMC4-209ENST00000468653 CFAP53Q96M91 514 aa25.33■■□□□ 1.65
SMC4-209ENST00000468653 LMTK3Q96Q04 1460 aa25.32■■□□□ 1.64
SMC4-209ENST00000468653 NKTRP30414 1462 aaKnown RBP25.31■■□□□ 1.64
SMC4-209ENST00000468653 PMFBP1Q8TBY8 1022 aa25.31■■□□□ 1.64
SMC4-209ENST00000468653 SCAF1Q9H7N4 1312 aaKnown RBP25.31■■□□□ 1.64
SMC4-209ENST00000468653 ADGRL3Q9HAR2 1447 aa25.31■■□□□ 1.64
SMC4-209ENST00000468653 NALCNQ8IZF0 1738 aa25.31■■□□□ 1.64
SMC4-209ENST00000468653 PROSER2Q86WR7 435 aaPredicted RBP25.31■■□□□ 1.64
SMC4-209ENST00000468653 NME9Q86XW9 330 aa25.31■■□□□ 1.64
SMC4-209ENST00000468653 FMN2Q9NZ56 1722 aa25.3■■□□□ 1.64
SMC4-209ENST00000468653 BLMP54132 1417 aaPredicted RBP25.3■■□□□ 1.64
SMC4-209ENST00000468653 SENP3-EIF4A1A0A087X0R7 540 aa25.3■■□□□ 1.64
SMC4-209ENST00000468653 NGDNQ8NEJ9 315 aaKnown RBP25.29■■□□□ 1.64
SMC4-209ENST00000468653 USP6P35125 1406 aa25.28■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms