RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NCLP19338 710 aaKnown RBP14.69□□□□□ -0.06
CPSF3-202ENST00000460593 ZKSCAN2Q63HK3 967 aa14.69□□□□□ -0.06
CPSF3-202ENST00000460593 R3HCC1Q9Y3T6 440 aaKnown RBP14.69□□□□□ -0.06
CPSF3-202ENST00000460593 LAMC1P11047 1609 aa14.69□□□□□ -0.06
CPSF3-202ENST00000460593 TPM2P07951 284 aa14.68□□□□□ -0.06
CPSF3-202ENST00000460593 TRIM27P14373 513 aa14.68□□□□□ -0.06
CPSF3-202ENST00000460593 EIF2AK4Q9P2K8 1649 aaKnown RBP14.68□□□□□ -0.06
CPSF3-202ENST00000460593 SAMD9LQ8IVG5 1584 aa14.68□□□□□ -0.06
CPSF3-202ENST00000460593 SYCP2Q9BX26 1530 aa14.68□□□□□ -0.06
CPSF3-202ENST00000460593 SYNMO15061 1565 aa14.67□□□□□ -0.06
CPSF3-202ENST00000460593 NUP160Q12769 1436 aa14.67□□□□□ -0.06
CPSF3-202ENST00000460593 GBP4Q96PP9 640 aa14.67□□□□□ -0.06
CPSF3-202ENST00000460593 PDCL3Q9H2J4 239 aa14.67□□□□□ -0.06
CPSF3-202ENST00000460593 MTHFSP49914 203 aa14.67□□□□□ -0.06
CPSF3-202ENST00000460593 EXOSC9Q06265 439 aaKnown RBP14.67□□□□□ -0.06
CPSF3-202ENST00000460593 RAB3GAP1Q15042 981 aa14.67□□□□□ -0.06
CPSF3-202ENST00000460593 SLC12A5Q9H2X9 1139 aa14.67□□□□□ -0.06
CPSF3-202ENST00000460593 SCAF11Q99590 1463 aaKnown RBP14.67□□□□□ -0.06
CPSF3-202ENST00000460593 XPCQ01831 940 aaPredicted RBP14.66□□□□□ -0.06
CPSF3-202ENST00000460593 GAS2L2Q8NHY3 880 aa14.66□□□□□ -0.06
CPSF3-202ENST00000460593 CHAMP1Q96JM3 812 aa14.66□□□□□ -0.06
CPSF3-202ENST00000460593 U2AF1L5P0DN76 240 aaPredicted RBP14.66□□□□□ -0.06
CPSF3-202ENST00000460593 U2AF1Q01081 240 aaKnown RBP eCLIP14.66□□□□□ -0.06
CPSF3-202ENST00000460593 SENP3Q9H4L4 574 aaPredicted RBP14.66□□□□□ -0.06
CPSF3-202ENST00000460593 DDX49Q9Y6V7 483 aaKnown RBP14.66□□□□□ -0.06
CPSF3-202ENST00000460593 MYOM1P52179 1685 aa14.66□□□□□ -0.06
CPSF3-202ENST00000460593 TMEM57Q8N5G2 664 aa14.65□□□□□ -0.06
CPSF3-202ENST00000460593 SSH1Q8WYL5 1049 aa14.65□□□□□ -0.06
CPSF3-202ENST00000460593 KIF2CQ99661 725 aa14.65□□□□□ -0.06
CPSF3-202ENST00000460593 C1orf115Q9H7X2 142 aa14.65□□□□□ -0.06
CPSF3-202ENST00000460593 NOB1Q9ULX3 412 aaKnown RBP14.65□□□□□ -0.06
CPSF3-202ENST00000460593 ZSCAN30Q86W11 494 aa14.65□□□□□ -0.06
CPSF3-202ENST00000460593 SMC5Q8IY18 1101 aa14.65□□□□□ -0.06
CPSF3-202ENST00000460593 MSNP26038 577 aaKnown RBP14.64□□□□□ -0.07
CPSF3-202ENST00000460593 RNF17Q9BXT8 1623 aaKnown RBP14.64□□□□□ -0.07
CPSF3-202ENST00000460593 CARMIL2Q6F5E8 1435 aa14.64□□□□□ -0.07
CPSF3-202ENST00000460593 NCOA3Q9Y6Q9 1424 aa14.63□□□□□ -0.07
CPSF3-202ENST00000460593 NPC1L1Q9UHC9 1359 aa14.63□□□□□ -0.07
CPSF3-202ENST00000460593 CCDC173Q0VFZ6 552 aa14.63□□□□□ -0.07
CPSF3-202ENST00000460593 PRDM10Q9NQV6 1147 aa14.63□□□□□ -0.07
CPSF3-202ENST00000460593 ABCA8O94911 1581 aa14.63□□□□□ -0.07
CPSF3-202ENST00000460593 CAVIN1Q6NZI2 390 aaKnown RBP14.63□□□□□ -0.07
CPSF3-202ENST00000460593 PLXNC1O60486 1568 aa14.62□□□□□ -0.07
CPSF3-202ENST00000460593 ARHGEF5Q12774 1597 aa14.62□□□□□ -0.07
CPSF3-202ENST00000460593 RBM25P49756 843 aaKnown RBP14.62□□□□□ -0.07
CPSF3-202ENST00000460593 WDR63Q8IWG1 891 aa14.62□□□□□ -0.07
CPSF3-202ENST00000460593 NSD3Q9BZ95 1437 aa14.62□□□□□ -0.07
CPSF3-202ENST00000460593 ADGRF5Q8IZF2 1346 aa14.62□□□□□ -0.07
CPSF3-202ENST00000460593 OFD1O75665 1012 aa14.62□□□□□ -0.07
CPSF3-202ENST00000460593 PKP1Q13835 747 aa14.62□□□□□ -0.07
CPSF3-202ENST00000460593 MCTP1Q6DN14 999 aa14.62□□□□□ -0.07
CPSF3-202ENST00000460593 MADDQ8WXG6 1647 aa14.62□□□□□ -0.07
CPSF3-202ENST00000460593 POLR3AO14802 1390 aaPredicted RBP14.62□□□□□ -0.07
CPSF3-202ENST00000460593 PLEKHG5O94827 1062 aa14.61□□□□□ -0.07
CPSF3-202ENST00000460593 PHF23Q9BUL5 403 aaPredicted RBP14.61□□□□□ -0.07
CPSF3-202ENST00000460593 RBM27Q9P2N5 1060 aaKnown RBP14.61□□□□□ -0.07
CPSF3-202ENST00000460593 IQGAP1P46940 1657 aa14.61□□□□□ -0.07
CPSF3-202ENST00000460593 AK9Q5TCS8 1911 aa14.61□□□□□ -0.07
CPSF3-202ENST00000460593 ERVK-7P63135 1459 aa14.61□□□□□ -0.07
CPSF3-202ENST00000460593 JARID2Q92833 1246 aaPredicted RBP14.61□□□□□ -0.07
CPSF3-202ENST00000460593 SNX21Q969T3 373 aa14.61□□□□□ -0.07
CPSF3-202ENST00000460593 ISY1Q9ULR0 285 aaKnown RBP14.61□□□□□ -0.07
CPSF3-202ENST00000460593 U2SURPO15042 1029 aaKnown RBP14.6□□□□□ -0.07
CPSF3-202ENST00000460593 HDAC1Q13547 482 aaPredicted RBP14.6□□□□□ -0.07
CPSF3-202ENST00000460593 ANKRD45Q5TZF3 282 aa14.6□□□□□ -0.07
CPSF3-202ENST00000460593 PPP1R9BQ96SB3 815 aa14.6□□□□□ -0.07
CPSF3-202ENST00000460593 TRAK1Q9UPV9 953 aa14.6□□□□□ -0.07
CPSF3-202ENST00000460593 BAG4O95429 457 aaKnown RBP14.6□□□□□ -0.07
CPSF3-202ENST00000460593 MPNDQ8N594 471 aa14.6□□□□□ -0.07
CPSF3-202ENST00000460593 NGEFQ8N5V2 710 aa14.6□□□□□ -0.07
CPSF3-202ENST00000460593 ANP32BQ92688 251 aaKnown RBP14.6□□□□□ -0.07
CPSF3-202ENST00000460593 PRDM4Q9UKN5 801 aa14.6□□□□□ -0.07
CPSF3-202ENST00000460593 ARHGAP5Q13017 1502 aa14.59□□□□□ -0.07
CPSF3-202ENST00000460593 FOXD4L5Q5VV16 416 aaPredicted RBP14.59□□□□□ -0.07
CPSF3-202ENST00000460593 ATF7IPQ6VMQ6 1270 aa14.59□□□□□ -0.07
CPSF3-202ENST00000460593 FOXD4L4Q8WXT5 416 aaPredicted RBP14.59□□□□□ -0.07
CPSF3-202ENST00000460593 RBSNQ9H1K0 784 aa14.59□□□□□ -0.07
CPSF3-202ENST00000460593 UNC13BO14795 1591 aa14.59□□□□□ -0.07
CPSF3-202ENST00000460593 ZMYM3Q14202 1370 aa14.59□□□□□ -0.07
CPSF3-202ENST00000460593 K7ELQ4 463 aaPredicted RBP14.59□□□□□ -0.07
CPSF3-202ENST00000460593 AAMPQ13685 434 aa14.59□□□□□ -0.07
CPSF3-202ENST00000460593 SKOR2Q2VWA4 1001 aaPredicted RBP14.59□□□□□ -0.07
CPSF3-202ENST00000460593 CDC42BPBQ9Y5S2 1711 aa14.59□□□□□ -0.07
CPSF3-202ENST00000460593 DDX19BQ9UMR2 479 aa14.59□□□□□ -0.07
CPSF3-202ENST00000460593 UQCRHLA0A096LP55 91 aa14.58□□□□□ -0.08
CPSF3-202ENST00000460593 UQCRHP07919 91 aa14.58□□□□□ -0.08
CPSF3-202ENST00000460593 CHD1LQ86WJ1 897 aa14.58□□□□□ -0.08
CPSF3-202ENST00000460593 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.58□□□□□ -0.08
CPSF3-202ENST00000460593 A0A0U1RQG5 324 aaPredicted RBP14.58□□□□□ -0.08
CPSF3-202ENST00000460593 TBC1D9Q6ZT07 1266 aa14.58□□□□□ -0.08
CPSF3-202ENST00000460593 MRC2Q9UBG0 1479 aa14.58□□□□□ -0.08
CPSF3-202ENST00000460593 NUCB1Q02818 461 aa14.57□□□□□ -0.08
CPSF3-202ENST00000460593 RSPH4AQ5TD94 716 aa14.57□□□□□ -0.08
CPSF3-202ENST00000460593 ZBTB40Q9NUA8 1239 aa14.57□□□□□ -0.08
CPSF3-202ENST00000460593 PODXL2Q9NZ53 605 aa14.57□□□□□ -0.08
CPSF3-202ENST00000460593 CIZ1Q9ULV3 898 aaPredicted RBP14.57□□□□□ -0.08
CPSF3-202ENST00000460593 IQSEC2Q5JU85 1478 aa14.57□□□□□ -0.08
CPSF3-202ENST00000460593 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.57□□□□□ -0.08
CPSF3-202ENST00000460593 CHGAP10645 457 aaKnown RBP14.56□□□□□ -0.08
CPSF3-202ENST00000460593 PRIM1P49642 420 aaKnown RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms