RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 PLEKHG1Q9ULL1 1385 aa14.43□□□□□ -0.1
USP39-210ENST00000459775 TPRNQ4KMQ1 711 aa14.42□□□□□ -0.1
USP39-210ENST00000459775 NPM2Q86SE8 214 aaKnown RBP14.42□□□□□ -0.1
USP39-210ENST00000459775 FAM135BQ49AJ0 1406 aa14.41□□□□□ -0.1
USP39-210ENST00000459775 TESK2Q96S53 571 aa14.41□□□□□ -0.1
USP39-210ENST00000459775 WASHC2AQ641Q2 1341 aa14.41□□□□□ -0.1
USP39-210ENST00000459775 DDX10Q13206 875 aaKnown RBP14.4□□□□□ -0.1
USP39-210ENST00000459775 WAPLQ7Z5K2 1190 aa14.4□□□□□ -0.1
USP39-210ENST00000459775 KIAA1210Q9ULL0 1709 aa14.4□□□□□ -0.1
USP39-210ENST00000459775 YTHDC2Q9H6S0 1430 aaKnown RBP14.39□□□□□ -0.11
USP39-210ENST00000459775 SETBP1Q9Y6X0 1596 aa14.39□□□□□ -0.11
USP39-210ENST00000459775 KIF7Q2M1P5 1343 aa14.38□□□□□ -0.11
USP39-210ENST00000459775 UBE2Q2Q8WVN8 375 aa14.38□□□□□ -0.11
USP39-210ENST00000459775 PRAM1Q96QH2 718 aa14.38□□□□□ -0.11
USP39-210ENST00000459775 PTPRUQ92729 1446 aa14.38□□□□□ -0.11
USP39-210ENST00000459775 PLEKHH1Q9ULM0 1364 aa14.38□□□□□ -0.11
USP39-210ENST00000459775 SETD1AO15047 1707 aaKnown RBP14.37□□□□□ -0.11
USP39-210ENST00000459775 RBM33Q96EV2 1170 aaKnown RBP14.37□□□□□ -0.11
USP39-210ENST00000459775 LAMC1P11047 1609 aa14.37□□□□□ -0.11
USP39-210ENST00000459775 RGS17Q9UGC6 210 aaPredicted RBP14.36□□□□□ -0.11
USP39-210ENST00000459775 XIRP1Q702N8 1843 aaKnown RBP14.36□□□□□ -0.11
USP39-210ENST00000459775 CENPJQ9HC77 1338 aaPredicted RBP14.36□□□□□ -0.11
USP39-210ENST00000459775 TBX22Q9Y458 520 aa14.36□□□□□ -0.11
USP39-210ENST00000459775 GTF3C3Q9Y5Q9 886 aa14.36□□□□□ -0.11
USP39-210ENST00000459775 MINK1Q8N4C8 1332 aaPredicted RBP14.35□□□□□ -0.11
USP39-210ENST00000459775 POGKQ9P215 609 aa14.35□□□□□ -0.11
USP39-210ENST00000459775 AMOTL2Q9Y2J4 779 aa14.35□□□□□ -0.11
USP39-210ENST00000459775 LRPPRCP42704 1394 aaKnown RBP14.34□□□□□ -0.11
USP39-210ENST00000459775 CCDC7Q96M83 1385 aa14.34□□□□□ -0.11
USP39-210ENST00000459775 DIEXFQ68CQ4 756 aaKnown RBP14.34□□□□□ -0.11
USP39-210ENST00000459775 ROBO2Q9HCK4 1378 aa14.34□□□□□ -0.11
USP39-210ENST00000459775 NKTRP30414 1462 aaKnown RBP14.33□□□□□ -0.12
USP39-210ENST00000459775 KCNA6P17658 529 aa14.33□□□□□ -0.12
USP39-210ENST00000459775 EIF3AQ14152 1382 aaKnown RBP14.33□□□□□ -0.12
USP39-210ENST00000459775 ABCC11Q96J66 1382 aa14.32□□□□□ -0.12
USP39-210ENST00000459775 ROBO1Q9Y6N7 1651 aa14.31□□□□□ -0.12
USP39-210ENST00000459775 NWD1Q149M9 1564 aa14.31□□□□□ -0.12
USP39-210ENST00000459775 TMF1P82094 1093 aa14.3□□□□□ -0.12
USP39-210ENST00000459775 ARHGEF28Q8N1W1 1705 aaKnown RBP14.3□□□□□ -0.12
USP39-210ENST00000459775 CNGB1Q14028 1251 aaPredicted RBP14.29□□□□□ -0.12
USP39-210ENST00000459775 CABP2Q9NPB3 220 aa14.29□□□□□ -0.12
USP39-210ENST00000459775 FBXO3Q9UK99 471 aa14.29□□□□□ -0.12
USP39-210ENST00000459775 TMEM94Q12767 1356 aa14.28□□□□□ -0.12
USP39-210ENST00000459775 POTEAQ6S8J7 498 aa14.27□□□□□ -0.12
USP39-210ENST00000459775 NUTM2FA1L443 756 aa14.27□□□□□ -0.13
USP39-210ENST00000459775 QRICH2Q9H0J4 1663 aa14.27□□□□□ -0.13
USP39-210ENST00000459775 JCADQ9P266 1359 aa14.27□□□□□ -0.13
USP39-210ENST00000459775 PDIA4P13667 645 aaKnown RBP14.26□□□□□ -0.13
USP39-210ENST00000459775 TECPR2O15040 1411 aa14.25□□□□□ -0.13
USP39-210ENST00000459775 PHLPP1O60346 1717 aa14.25□□□□□ -0.13
USP39-210ENST00000459775 MSH6P52701 1360 aa14.25□□□□□ -0.13
USP39-210ENST00000459775 TULP4Q9NRJ4 1543 aa14.25□□□□□ -0.13
USP39-210ENST00000459775 SRPK2P78362 688 aaKnown RBP14.24□□□□□ -0.13
USP39-210ENST00000459775 CDK19Q9BWU1 502 aa14.24□□□□□ -0.13
USP39-210ENST00000459775 DIP2AQ14689 1571 aa14.24□□□□□ -0.13
USP39-210ENST00000459775 DLC1Q96QB1 1528 aa14.24□□□□□ -0.13
USP39-210ENST00000459775 NCOA3Q9Y6Q9 1424 aa14.23□□□□□ -0.13
USP39-210ENST00000459775 SBNO2Q9Y2G9 1366 aa14.23□□□□□ -0.13
USP39-210ENST00000459775 TMC1Q8TDI8 760 aa14.23□□□□□ -0.13
USP39-210ENST00000459775 SLC12A5Q9H2X9 1139 aa14.23□□□□□ -0.13
USP39-210ENST00000459775 EVC2Q86UK5 1308 aa14.22□□□□□ -0.13
USP39-210ENST00000459775 MIER1Q8N108 512 aa14.22□□□□□ -0.13
USP39-210ENST00000459775 SIRT1Q96EB6 747 aa14.22□□□□□ -0.13
USP39-210ENST00000459775 PIK3R4Q99570 1358 aa14.22□□□□□ -0.13
USP39-210ENST00000459775 SPATA31A6Q5VVP1 1343 aa14.21□□□□□ -0.13
USP39-210ENST00000459775 PROSER2Q86WR7 435 aaPredicted RBP14.21□□□□□ -0.13
USP39-210ENST00000459775 PANK3Q9H999 370 aa14.21□□□□□ -0.13
USP39-210ENST00000459775 XRN1Q8IZH2 1706 aaKnown RBP14.21□□□□□ -0.13
USP39-210ENST00000459775 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.21□□□□□ -0.13
USP39-210ENST00000459775 WASLO00401 505 aaPredicted RBP14.2□□□□□ -0.14
USP39-210ENST00000459775 C14orf37Q86TY3 774 aa14.2□□□□□ -0.14
USP39-210ENST00000459775 COL16A1Q07092 1604 aaPredicted RBP14.2□□□□□ -0.14
USP39-210ENST00000459775 ZNF772Q68DY9 489 aaPredicted RBP14.2□□□□□ -0.14
USP39-210ENST00000459775 KNDC1Q76NI1 1749 aa14.2□□□□□ -0.14
USP39-210ENST00000459775 CHD2O14647 1828 aaKnown RBP14.19□□□□□ -0.14
USP39-210ENST00000459775 PTCH1Q13635 1447 aa14.19□□□□□ -0.14
USP39-210ENST00000459775 CDK12Q9NYV4 1490 aaPredicted RBP14.18□□□□□ -0.14
USP39-210ENST00000459775 SHPRHQ149N8 1683 aa14.18□□□□□ -0.14
USP39-210ENST00000459775 PRR36Q9H6K5 1346 aa14.18□□□□□ -0.14
USP39-210ENST00000459775 CDCA8Q53HL2 280 aa14.18□□□□□ -0.14
USP39-210ENST00000459775 AHDC1Q5TGY3 1603 aaPredicted RBP14.17□□□□□ -0.14
USP39-210ENST00000459775 CABP1Q9NZU7 370 aa14.17□□□□□ -0.14
USP39-210ENST00000459775 CARD14Q9BXL6 1004 aa14.17□□□□□ -0.14
USP39-210ENST00000459775 NUDT16Q96DE0 195 aaKnown RBP14.16□□□□□ -0.14
USP39-210ENST00000459775 SLAIN2Q9P270 581 aa14.16□□□□□ -0.14
USP39-210ENST00000459775 PER1O15534 1290 aaPredicted RBP14.15□□□□□ -0.14
USP39-210ENST00000459775 MYOM1P52179 1685 aa14.14□□□□□ -0.15
USP39-210ENST00000459775 MEX3CQ5U5Q3 659 aaKnown RBP14.13□□□□□ -0.15
USP39-210ENST00000459775 UPF1Q92900 1129 aaKnown RBP eCLIP14.13□□□□□ -0.15
USP39-210ENST00000459775 CC2D1BQ5T0F9 858 aaKnown RBP14.12□□□□□ -0.15
USP39-210ENST00000459775 PMFBP1Q8TBY8 1022 aa14.12□□□□□ -0.15
USP39-210ENST00000459775 LRP6O75581 1613 aa14.12□□□□□ -0.15
USP39-210ENST00000459775 NALCNQ8IZF0 1738 aa14.11□□□□□ -0.15
USP39-210ENST00000459775 PPIP5K1Q6PFW1 1433 aa14.1□□□□□ -0.15
USP39-210ENST00000459775 ATP7BP35670 1465 aa14.1□□□□□ -0.15
USP39-210ENST00000459775 CADPS2Q86UW7 1296 aa14.1□□□□□ -0.15
USP39-210ENST00000459775 CCDC61Q9Y6R9 512 aa14.1□□□□□ -0.15
USP39-210ENST00000459775 ATAD2Q6PL18 1390 aa14.1□□□□□ -0.15
USP39-210ENST00000459775 ADGRL3Q9HAR2 1447 aa14.1□□□□□ -0.15
USP39-210ENST00000459775 A0A1W2PP64 1363 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms