RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 LMOD2Q6P5Q4 547 aa9.38□□□□□ -0.91
VPS41-209ENST00000457055 ARXQ96QS3 562 aa9.37□□□□□ -0.91
VPS41-209ENST00000457055 ZBTB24O43167 697 aaPredicted RBP9.36□□□□□ -0.91
VPS41-209ENST00000457055 USP46P62068 366 aa9.36□□□□□ -0.91
VPS41-209ENST00000457055 GPCPD1Q9NPB8 672 aa9.36□□□□□ -0.91
VPS41-209ENST00000457055 CLCN1P35523 988 aa9.35□□□□□ -0.91
VPS41-209ENST00000457055 HLA-CQ95604 372 aa9.35□□□□□ -0.91
VPS41-209ENST00000457055 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS41-209ENST00000457055 USB1Q9BQ65 265 aaKnown RBP9.34□□□□□ -0.91
VPS41-209ENST00000457055 HOXA2O43364 376 aa9.33□□□□□ -0.92
VPS41-209ENST00000457055 MMP16P51512 607 aa9.33□□□□□ -0.92
VPS41-209ENST00000457055 KRI1Q8N9T8 703 aaKnown RBP9.33□□□□□ -0.92
VPS41-209ENST00000457055 FAM217BQ9NTX9 383 aaPredicted RBP9.33□□□□□ -0.92
VPS41-209ENST00000457055 ST8SIA5O15466 376 aa9.32□□□□□ -0.92
VPS41-209ENST00000457055 PRKCSHP14314 528 aaPredicted RBP9.32□□□□□ -0.92
VPS41-209ENST00000457055 CYP4X1Q8N118 509 aa9.32□□□□□ -0.92
VPS41-209ENST00000457055 GUCA2AQ02747 115 aa9.31□□□□□ -0.92
VPS41-209ENST00000457055 TOR4AQ9NXH8 423 aa9.31□□□□□ -0.92
VPS41-209ENST00000457055 DXOO77932 396 aaKnown RBP9.3□□□□□ -0.92
VPS41-209ENST00000457055 AAASQ9NRG9 546 aa9.3□□□□□ -0.92
VPS41-209ENST00000457055 TRIM32Q13049 653 aa9.29□□□□□ -0.92
VPS41-209ENST00000457055 NUTM1Q86Y26 1132 aa9.29□□□□□ -0.92
VPS41-209ENST00000457055 POTECB2RU33 542 aa9.28□□□□□ -0.92
VPS41-209ENST00000457055 TTC24A2A3L6 582 aaPredicted RBP9.27□□□□□ -0.93
VPS41-209ENST00000457055 CCDC24Q8N4L8 307 aa9.27□□□□□ -0.93
VPS41-209ENST00000457055 ZNF775Q96BV0 537 aaPredicted RBP9.27□□□□□ -0.93
VPS41-209ENST00000457055 WNT7AO00755 349 aa9.26□□□□□ -0.93
VPS41-209ENST00000457055 REPIN1Q9BWE0 567 aaKnown RBP9.26□□□□□ -0.93
VPS41-209ENST00000457055 AVPP01185 164 aa9.25□□□□□ -0.93
VPS41-209ENST00000457055 CRIPAKQ8N1N5 446 aa9.25□□□□□ -0.93
VPS41-209ENST00000457055 SYMPKQ92797 1274 aaKnown RBP9.25□□□□□ -0.93
VPS41-209ENST00000457055 JUNDP17535 347 aa9.24□□□□□ -0.93
VPS41-209ENST00000457055 TTLL12Q14166 644 aaPredicted RBP9.24□□□□□ -0.93
VPS41-209ENST00000457055 AXIN1O15169 862 aa9.23□□□□□ -0.93
VPS41-209ENST00000457055 FDX1P10109 184 aa9.23□□□□□ -0.93
VPS41-209ENST00000457055 SSTR3P32745 418 aaPredicted RBP9.23□□□□□ -0.93
VPS41-209ENST00000457055 RANGAP1P46060 587 aaPredicted RBP9.23□□□□□ -0.93
VPS41-209ENST00000457055 BARGINQ6ZT62 677 aa9.23□□□□□ -0.93
VPS41-209ENST00000457055 RETREG3Q86VR2 466 aa9.23□□□□□ -0.93
VPS41-209ENST00000457055 MRGPRX2Q96LB1 330 aa9.23□□□□□ -0.93
VPS41-209ENST00000457055 ZMYND10O75800 440 aa9.22□□□□□ -0.93
VPS41-209ENST00000457055 CTC1Q2NKJ3 1217 aa9.22□□□□□ -0.93
VPS41-209ENST00000457055 SNIP1Q8TAD8 396 aaKnown RBP9.22□□□□□ -0.93
VPS41-209ENST00000457055 ZC3H15Q8WU90 426 aaKnown RBP9.22□□□□□ -0.93
VPS41-209ENST00000457055 C6orf229H3BNL8 230 aa9.21□□□□□ -0.94
VPS41-209ENST00000457055 DACH1Q9UI36 760 aa9.21□□□□□ -0.94
VPS41-209ENST00000457055 AMHR2Q16671 573 aa9.2□□□□□ -0.94
VPS41-209ENST00000457055 SPIRE2Q8WWL2 714 aa9.2□□□□□ -0.94
VPS41-209ENST00000457055 PCDHGC3Q9UN70 934 aa9.2□□□□□ -0.94
VPS41-209ENST00000457055 SMPD1P17405 629 aa9.19□□□□□ -0.94
VPS41-209ENST00000457055 SMCPP49901 116 aaPredicted RBP9.19□□□□□ -0.94
VPS41-209ENST00000457055 WNT7BP56706 349 aa9.19□□□□□ -0.94
VPS41-209ENST00000457055 NUDT12Q9BQG2 462 aa9.19□□□□□ -0.94
VPS41-209ENST00000457055 J3QL48 77 aa9.18□□□□□ -0.94
VPS41-209ENST00000457055 SKOR1P84550 965 aa9.18□□□□□ -0.94
VPS41-209ENST00000457055 RC3H1Q5TC82 1133 aaKnown RBP9.18□□□□□ -0.94
VPS41-209ENST00000457055 GIGYF2Q6Y7W6 1299 aaKnown RBP9.18□□□□□ -0.94
VPS41-209ENST00000457055 NDUFV2P19404 249 aa9.17□□□□□ -0.94
VPS41-209ENST00000457055 GMPR2Q9P2T1 348 aaKnown RBP9.17□□□□□ -0.94
VPS41-209ENST00000457055 MOXD2PA6NHM9 499 aa9.16□□□□□ -0.94
VPS41-209ENST00000457055 MS4A1P11836 297 aa9.16□□□□□ -0.94
VPS41-209ENST00000457055 BEGAINQ9BUH8 593 aa9.15□□□□□ -0.94
VPS41-209ENST00000457055 C11orf95C9JLR9 678 aaPredicted RBP9.14□□□□□ -0.95
VPS41-209ENST00000457055 CCNYL3P0C7X3 344 aa9.14□□□□□ -0.95
VPS41-209ENST00000457055 PTCRAQ6ISU1 281 aaPredicted RBP9.14□□□□□ -0.95
VPS41-209ENST00000457055 PARP9Q8IXQ6 854 aa9.13□□□□□ -0.95
VPS41-209ENST00000457055 HPS1Q92902 700 aa9.13□□□□□ -0.95
VPS41-209ENST00000457055 NISCHQ9Y2I1 1504 aa9.13□□□□□ -0.95
VPS41-209ENST00000457055 MTMR2Q13614 643 aa9.12□□□□□ -0.95
VPS41-209ENST00000457055 PTPRNQ16849 979 aa9.12□□□□□ -0.95
VPS41-209ENST00000457055 PRR7Q8TB68 274 aa9.12□□□□□ -0.95
VPS41-209ENST00000457055 ABCC9O60706 1549 aa9.11□□□□□ -0.95
VPS41-209ENST00000457055 ALDH1A1P00352 501 aa9.11□□□□□ -0.95
VPS41-209ENST00000457055 EHBP1Q8NDI1 1231 aa9.11□□□□□ -0.95
VPS41-209ENST00000457055 TBC1D2Q9BYX2 928 aa9.11□□□□□ -0.95
VPS41-209ENST00000457055 ATP13A2Q9NQ11 1180 aa9.11□□□□□ -0.95
VPS41-209ENST00000457055 SPDYE5A6NIY4 337 aa9.1□□□□□ -0.95
VPS41-209ENST00000457055 TRIM66O15016 1216 aa9.1□□□□□ -0.95
VPS41-209ENST00000457055 UNC93B1Q9H1C4 597 aa9.1□□□□□ -0.95
VPS41-209ENST00000457055 SH3BP2P78314 561 aa9.09□□□□□ -0.95
VPS41-209ENST00000457055 DIXDC1Q155Q3 683 aa9.09□□□□□ -0.95
VPS41-209ENST00000457055 RSBN1LQ6PCB5 846 aaPredicted RBP9.08□□□□□ -0.96
VPS41-209ENST00000457055 TREML4Q6UXN2 200 aa9.08□□□□□ -0.96
VPS41-209ENST00000457055 AK7Q96M32 723 aa9.08□□□□□ -0.96
VPS41-209ENST00000457055 EVA1BQ9NVM1 165 aa9.08□□□□□ -0.96
VPS41-209ENST00000457055 SIAH2O43255 324 aa9.07□□□□□ -0.96
VPS41-209ENST00000457055 GJA5P36382 358 aa9.07□□□□□ -0.96
VPS41-209ENST00000457055 KCNH2Q12809 1159 aa9.07□□□□□ -0.96
VPS41-209ENST00000457055 LINC01559Q495D7 138 aa9.07□□□□□ -0.96
VPS41-209ENST00000457055 DESI1Q6ICB0 168 aa9.07□□□□□ -0.96
VPS41-209ENST00000457055 HOMEZQ8IX15 550 aa9.06□□□□□ -0.96
VPS41-209ENST00000457055 SENP2Q9HC62 589 aa9.06□□□□□ -0.96
VPS41-209ENST00000457055 TIMELESSQ9UNS1 1208 aa9.06□□□□□ -0.96
VPS41-209ENST00000457055 WASF2Q9Y6W5 498 aa9.06□□□□□ -0.96
VPS41-209ENST00000457055 SNRPBP14678 240 aaKnown RBP9.05□□□□□ -0.96
VPS41-209ENST00000457055 BAP1Q92560 729 aa9.05□□□□□ -0.96
VPS41-209ENST00000457055 TRIM47Q96LD4 638 aa9.05□□□□□ -0.96
VPS41-209ENST00000457055 PCDHB15Q9Y5E8 787 aa9.05□□□□□ -0.96
VPS41-209ENST00000457055 SPTLC1O15269 473 aa9.04□□□□□ -0.96
VPS41-209ENST00000457055 LCE2AQ5TA79 106 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms