RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 HDGFP51858 240 aaKnown RBP17.15■□□□□ 0.34
COL28A1-204ENST00000444268 EID1Q9Y6B2 187 aa17.15■□□□□ 0.34
COL28A1-204ENST00000444268 CC2D1BQ5T0F9 858 aaKnown RBP17.14■□□□□ 0.33
COL28A1-204ENST00000444268 PLEKHG1Q9ULL1 1385 aa17.14■□□□□ 0.33
COL28A1-204ENST00000444268 BLMP54132 1417 aaPredicted RBP17.13■□□□□ 0.33
COL28A1-204ENST00000444268 ADAMTS13Q76LX8 1427 aa17.13■□□□□ 0.33
COL28A1-204ENST00000444268 TRAK1Q9UPV9 953 aa17.12■□□□□ 0.33
COL28A1-204ENST00000444268 RNF123Q5XPI4 1314 aa17.12■□□□□ 0.33
COL28A1-204ENST00000444268 METP08581 1390 aa17.12■□□□□ 0.33
COL28A1-204ENST00000444268 SLC26A8Q96RN1 970 aa17.12■□□□□ 0.33
COL28A1-204ENST00000444268 STK26Q9P289 416 aa17.12■□□□□ 0.33
COL28A1-204ENST00000444268 QRICH2Q9H0J4 1663 aa17.1■□□□□ 0.33
COL28A1-204ENST00000444268 HSPA2P54652 639 aa17.1■□□□□ 0.33
COL28A1-204ENST00000444268 CENPJQ9HC77 1338 aaPredicted RBP17.09■□□□□ 0.33
COL28A1-204ENST00000444268 AMER1Q5JTC6 1135 aaPredicted RBP17.09■□□□□ 0.33
COL28A1-204ENST00000444268 ANKLE2Q86XL3 938 aa17.09■□□□□ 0.33
COL28A1-204ENST00000444268 NCKAP5LQ9HCH0 1330 aa17.09■□□□□ 0.33
COL28A1-204ENST00000444268 YTHDC2Q9H6S0 1430 aaKnown RBP17.08■□□□□ 0.33
COL28A1-204ENST00000444268 IRX6P78412 446 aaPredicted RBP17.08■□□□□ 0.33
COL28A1-204ENST00000444268 LMTK3Q96Q04 1460 aa17.08■□□□□ 0.32
COL28A1-204ENST00000444268 MED14O60244 1454 aa17.08■□□□□ 0.32
COL28A1-204ENST00000444268 ARHGEF28Q8N1W1 1705 aaKnown RBP17.07■□□□□ 0.32
COL28A1-204ENST00000444268 PPP2R1AP30153 589 aa17.05■□□□□ 0.32
COL28A1-204ENST00000444268 SAFB2Q14151 953 aaKnown RBP eCLIP17.04■□□□□ 0.32
COL28A1-204ENST00000444268 PUS7Q96PZ0 661 aaKnown RBP17.04■□□□□ 0.32
COL28A1-204ENST00000444268 PTPRUQ92729 1446 aa17.04■□□□□ 0.32
COL28A1-204ENST00000444268 NPHP4O75161 1426 aaPredicted RBP17.03■□□□□ 0.32
COL28A1-204ENST00000444268 WDR43Q15061 677 aaKnown RBP eCLIP17.02■□□□□ 0.32
COL28A1-204ENST00000444268 USP32Q8NFA0 1604 aa17.02■□□□□ 0.32
COL28A1-204ENST00000444268 TBX22Q9Y458 520 aa17.02■□□□□ 0.31
COL28A1-204ENST00000444268 PLEKHH1Q9ULM0 1364 aa17.01■□□□□ 0.31
COL28A1-204ENST00000444268 WAPLQ7Z5K2 1190 aa17.01■□□□□ 0.31
COL28A1-204ENST00000444268 PRAM1Q96QH2 718 aa17.01■□□□□ 0.31
COL28A1-204ENST00000444268 DIP2AQ14689 1571 aa17.01■□□□□ 0.31
COL28A1-204ENST00000444268 ABCC11Q96J66 1382 aa16.99■□□□□ 0.31
COL28A1-204ENST00000444268 KNDC1Q76NI1 1749 aa16.98■□□□□ 0.31
COL28A1-204ENST00000444268 ROBO2Q9HCK4 1378 aa16.98■□□□□ 0.31
COL28A1-204ENST00000444268 DLC1Q96QB1 1528 aa16.98■□□□□ 0.31
COL28A1-204ENST00000444268 POGKQ9P215 609 aa16.97■□□□□ 0.31
COL28A1-204ENST00000444268 AMOTL2Q9Y2J4 779 aa16.97■□□□□ 0.31
COL28A1-204ENST00000444268 RCAN3Q9UKA8 241 aa16.97■□□□□ 0.31
COL28A1-204ENST00000444268 CPS1P31327 1500 aa16.97■□□□□ 0.31
COL28A1-204ENST00000444268 STRCQ7RTU9 1775 aa16.97■□□□□ 0.31
COL28A1-204ENST00000444268 EVC2Q86UK5 1308 aa16.96■□□□□ 0.31
COL28A1-204ENST00000444268 MINK1Q8N4C8 1332 aaPredicted RBP16.96■□□□□ 0.31
COL28A1-204ENST00000444268 TECPR2O15040 1411 aa16.96■□□□□ 0.31
COL28A1-204ENST00000444268 NGEFQ8N5V2 710 aa16.95■□□□□ 0.3
COL28A1-204ENST00000444268 ADAMTS8Q9UP79 889 aa16.95■□□□□ 0.3
COL28A1-204ENST00000444268 NINLQ9Y2I6 1382 aa16.95■□□□□ 0.3
COL28A1-204ENST00000444268 TULP4Q9NRJ4 1543 aa16.95■□□□□ 0.3
COL28A1-204ENST00000444268 XRN1Q8IZH2 1706 aaKnown RBP16.95■□□□□ 0.3
COL28A1-204ENST00000444268 KCNA6P17658 529 aa16.94■□□□□ 0.3
COL28A1-204ENST00000444268 RRP1P56182 461 aaKnown RBP16.94■□□□□ 0.3
COL28A1-204ENST00000444268 CHD2O14647 1828 aaKnown RBP16.93■□□□□ 0.3
COL28A1-204ENST00000444268 NSD2O96028 1365 aa16.93■□□□□ 0.3
COL28A1-204ENST00000444268 B4GALNT3Q6L9W6 998 aa16.92■□□□□ 0.3
COL28A1-204ENST00000444268 CARD14Q9BXL6 1004 aa16.92■□□□□ 0.3
COL28A1-204ENST00000444268 NSD3Q9BZ95 1437 aa16.92■□□□□ 0.3
COL28A1-204ENST00000444268 POLR3AO14802 1390 aaPredicted RBP16.92■□□□□ 0.3
COL28A1-204ENST00000444268 FAM135BQ49AJ0 1406 aa16.92■□□□□ 0.3
COL28A1-204ENST00000444268 PIK3R4Q99570 1358 aa16.91■□□□□ 0.3
COL28A1-204ENST00000444268 CCDC136Q96JN2 1154 aa16.91■□□□□ 0.3
COL28A1-204ENST00000444268 RBM19Q9Y4C8 960 aaKnown RBP16.91■□□□□ 0.3
COL28A1-204ENST00000444268 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.9■□□□□ 0.3
COL28A1-204ENST00000444268 RBM33Q96EV2 1170 aaKnown RBP16.9■□□□□ 0.3
COL28A1-204ENST00000444268 SALL2Q9Y467 1007 aaPredicted RBP16.9■□□□□ 0.3
COL28A1-204ENST00000444268 ANKRD36BQ8N2N9 1353 aa16.9■□□□□ 0.3
COL28A1-204ENST00000444268 CGNL1Q0VF96 1302 aa16.89■□□□□ 0.29
COL28A1-204ENST00000444268 PTCH1Q13635 1447 aa16.89■□□□□ 0.29
COL28A1-204ENST00000444268 SIRT1Q96EB6 747 aa16.89■□□□□ 0.29
COL28A1-204ENST00000444268 CABP2Q9NPB3 220 aa16.89■□□□□ 0.29
COL28A1-204ENST00000444268 SENP3-EIF4A1A0A087X0R7 540 aa16.87■□□□□ 0.29
COL28A1-204ENST00000444268 ZNF521Q96K83 1311 aa16.87■□□□□ 0.29
COL28A1-204ENST00000444268 STRCP1A6NGW2 1772 aa16.86■□□□□ 0.29
COL28A1-204ENST00000444268 MORC1Q86VD1 984 aa16.86■□□□□ 0.29
COL28A1-204ENST00000444268 CDK19Q9BWU1 502 aa16.86■□□□□ 0.29
COL28A1-204ENST00000444268 ATAD2Q6PL18 1390 aa16.86■□□□□ 0.29
COL28A1-204ENST00000444268 NWD1Q149M9 1564 aa16.86■□□□□ 0.29
COL28A1-204ENST00000444268 SRPK2P78362 688 aaKnown RBP16.85■□□□□ 0.29
COL28A1-204ENST00000444268 GOLGA2Q08379 1002 aa16.85■□□□□ 0.29
COL28A1-204ENST00000444268 CDCA7LQ96GN5 454 aa16.85■□□□□ 0.29
COL28A1-204ENST00000444268 SLC12A5Q9H2X9 1139 aa16.85■□□□□ 0.29
COL28A1-204ENST00000444268 MYT1Q01538 1121 aa16.84■□□□□ 0.29
COL28A1-204ENST00000444268 SHPRHQ149N8 1683 aa16.83■□□□□ 0.28
COL28A1-204ENST00000444268 WASLO00401 505 aaPredicted RBP16.82■□□□□ 0.28
COL28A1-204ENST00000444268 CFAP53Q96M91 514 aa16.82■□□□□ 0.28
COL28A1-204ENST00000444268 ADGRB2O60241 1585 aa16.82■□□□□ 0.28
COL28A1-204ENST00000444268 NALCNQ8IZF0 1738 aa16.81■□□□□ 0.28
COL28A1-204ENST00000444268 ANKRD26Q9UPS8 1709 aa16.81■□□□□ 0.28
COL28A1-204ENST00000444268 NUTM2FA1L443 756 aa16.81■□□□□ 0.28
COL28A1-204ENST00000444268 FANCIQ9NVI1 1328 aa16.8■□□□□ 0.28
COL28A1-204ENST00000444268 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.8■□□□□ 0.28
COL28A1-204ENST00000444268 ZNF335Q9H4Z2 1342 aaPredicted RBP16.8■□□□□ 0.28
COL28A1-204ENST00000444268 DUSP27Q5VZP5 1158 aa16.79■□□□□ 0.28
COL28A1-204ENST00000444268 TERF2IPQ9NYB0 399 aa16.79■□□□□ 0.28
COL28A1-204ENST00000444268 PRR36Q9H6K5 1346 aa16.78■□□□□ 0.28
COL28A1-204ENST00000444268 SLFN5Q08AF3 891 aa16.78■□□□□ 0.28
COL28A1-204ENST00000444268 PROSER2Q86WR7 435 aaPredicted RBP16.78■□□□□ 0.28
COL28A1-204ENST00000444268 E9PSI1 815 aa16.77■□□□□ 0.28
COL28A1-204ENST00000444268 NCBP3Q53F19 620 aaKnown RBP16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms