RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PRDM2Q13029 1718 aa20.88■□□□□ 0.93
PTPRF-209ENST00000438120 FGD6Q6ZV73 1430 aa20.88■□□□□ 0.93
PTPRF-209ENST00000438120 RBM33Q96EV2 1170 aaKnown RBP20.87■□□□□ 0.93
PTPRF-209ENST00000438120 AFAP1Q8N556 730 aa20.87■□□□□ 0.93
PTPRF-209ENST00000438120 UBTFL1P0CB47 393 aaPredicted RBP20.87■□□□□ 0.93
PTPRF-209ENST00000438120 CFAP70Q5T0N1 1121 aa20.86■□□□□ 0.93
PTPRF-209ENST00000438120 ERC2O15083 957 aa20.85■□□□□ 0.93
PTPRF-209ENST00000438120 AQRO60306 1485 aaKnown RBP eCLIP20.85■□□□□ 0.931e-6■■■■■ 36.8
PTPRF-209ENST00000438120 C22orf23Q9BZE7 217 aa20.85■□□□□ 0.93
PTPRF-209ENST00000438120 CDCA7LQ96GN5 454 aa20.85■□□□□ 0.93
PTPRF-209ENST00000438120 CHMP5Q9NZZ3 219 aa20.85■□□□□ 0.93
PTPRF-209ENST00000438120 ABTB2Q8N961 1025 aa20.83■□□□□ 0.93
PTPRF-209ENST00000438120 HSP90AB4PQ58FF6 505 aa20.83■□□□□ 0.93
PTPRF-209ENST00000438120 BCL11BQ9C0K0 894 aaPredicted RBP20.83■□□□□ 0.93
PTPRF-209ENST00000438120 ANKRD50Q9ULJ7 1429 aa20.83■□□□□ 0.92
PTPRF-209ENST00000438120 ESCO1Q5FWF5 840 aa20.82■□□□□ 0.92
PTPRF-209ENST00000438120 CCDC47Q96A33 483 aaKnown RBP20.82■□□□□ 0.92
PTPRF-209ENST00000438120 RALYLQ86SE5 291 aaKnown RBP20.82■□□□□ 0.92
PTPRF-209ENST00000438120 TCP11L2Q8N4U5 519 aa20.82■□□□□ 0.92
PTPRF-209ENST00000438120 C1orf115Q9H7X2 142 aa20.81■□□□□ 0.92
PTPRF-209ENST00000438120 MIA2Q96PC5 1412 aa20.81■□□□□ 0.92
PTPRF-209ENST00000438120 HOMER1Q86YM7 354 aa20.81■□□□□ 0.92
PTPRF-209ENST00000438120 FBXO3Q9UK99 471 aa20.8■□□□□ 0.92
PTPRF-209ENST00000438120 IPO7O95373 1038 aaKnown RBP20.8■□□□□ 0.92
PTPRF-209ENST00000438120 HSP90AA2PQ14568 343 aaPredicted RBP20.8■□□□□ 0.92
PTPRF-209ENST00000438120 ANKRD20A12PQ8NF67 263 aa20.8■□□□□ 0.92
PTPRF-209ENST00000438120 PRKAR2BP31323 418 aa20.79■□□□□ 0.92
PTPRF-209ENST00000438120 SASS6Q6UVJ0 657 aa20.79■□□□□ 0.92
PTPRF-209ENST00000438120 DNAJC2Q99543 621 aaKnown RBP20.79■□□□□ 0.92
PTPRF-209ENST00000438120 FSD1Q9BTV5 496 aa20.79■□□□□ 0.92
PTPRF-209ENST00000438120 CNTLNQ9NXG0 1405 aa20.79■□□□□ 0.92
PTPRF-209ENST00000438120 CCDC43Q96MW1 224 aaKnown RBP20.79■□□□□ 0.92
PTPRF-209ENST00000438120 RBM42Q9BTD8 480 aaKnown RBP20.79■□□□□ 0.92
PTPRF-209ENST00000438120 AEBP2Q6ZN18 517 aaPredicted RBP20.78■□□□□ 0.92
PTPRF-209ENST00000438120 WASHC2AQ641Q2 1341 aa20.78■□□□□ 0.92
PTPRF-209ENST00000438120 SURF6O75683 361 aaKnown RBP20.78■□□□□ 0.92
PTPRF-209ENST00000438120 STRN4Q9NRL3 753 aa20.78■□□□□ 0.92
PTPRF-209ENST00000438120 SAFBQ15424 915 aaKnown RBP eCLIP20.77■□□□□ 0.92
PTPRF-209ENST00000438120 CDC45O75419 566 aa20.77■□□□□ 0.92
PTPRF-209ENST00000438120 HOOK1Q9UJC3 728 aaKnown RBP20.77■□□□□ 0.92
PTPRF-209ENST00000438120 TXNDC2Q86VQ3 553 aa20.77■□□□□ 0.92
PTPRF-209ENST00000438120 EXOSC9Q06265 439 aaKnown RBP20.77■□□□□ 0.91
PTPRF-209ENST00000438120 PRAM1Q96QH2 718 aa20.77■□□□□ 0.91
PTPRF-209ENST00000438120 NBPF1Q3BBV0 1214 aa20.76■□□□□ 0.91
PTPRF-209ENST00000438120 CCDC70Q6NSX1 233 aa20.76■□□□□ 0.91
PTPRF-209ENST00000438120 CWC22Q9HCG8 908 aaKnown RBP20.76■□□□□ 0.91
PTPRF-209ENST00000438120 CCDC73Q6ZRK6 1079 aa20.76■□□□□ 0.91
PTPRF-209ENST00000438120 PATL2C9JE40 543 aaKnown RBP20.76■□□□□ 0.91
PTPRF-209ENST00000438120 ARHGAP5Q13017 1502 aa20.75■□□□□ 0.91
PTPRF-209ENST00000438120 PPP2R1AP30153 589 aa20.75■□□□□ 0.91
PTPRF-209ENST00000438120 NUCB2P80303 420 aa20.75■□□□□ 0.91
PTPRF-209ENST00000438120 TSR2Q969E8 191 aaKnown RBP20.75■□□□□ 0.91
PTPRF-209ENST00000438120 PHF23Q9BUL5 403 aaPredicted RBP20.74■□□□□ 0.91
PTPRF-209ENST00000438120 CCDC30Q5VVM6 783 aa20.74■□□□□ 0.91
PTPRF-209ENST00000438120 CNTROBQ8N137 903 aa20.73■□□□□ 0.91
PTPRF-209ENST00000438120 CUX1P39880 1505 aa20.73■□□□□ 0.91
PTPRF-209ENST00000438120 NAP1L1P55209 391 aaKnown RBP20.73■□□□□ 0.91
PTPRF-209ENST00000438120 ATP2B1P20020 1258 aa20.73■□□□□ 0.91
PTPRF-209ENST00000438120 NCOA2Q15596 1464 aa20.73■□□□□ 0.91
PTPRF-209ENST00000438120 CLASRPQ8N2M8 674 aaKnown RBP20.72■□□□□ 0.91
PTPRF-209ENST00000438120 LRRC9Q6ZRR7 1453 aa20.72■□□□□ 0.91
PTPRF-209ENST00000438120 GPRASP1Q5JY77 1395 aa20.72■□□□□ 0.91
PTPRF-209ENST00000438120 TWISTNBQ3B726 338 aaPredicted RBP20.71■□□□□ 0.91
PTPRF-209ENST00000438120 SLC12A5Q9H2X9 1139 aa20.71■□□□□ 0.91
PTPRF-209ENST00000438120 IKQ13123 557 aaPredicted RBP20.71■□□□□ 0.91
PTPRF-209ENST00000438120 PROSER2Q86WR7 435 aaPredicted RBP20.71■□□□□ 0.91
PTPRF-209ENST00000438120 RNF214Q8ND24 703 aa20.71■□□□□ 0.91
PTPRF-209ENST00000438120 FANCIQ9NVI1 1328 aa20.71■□□□□ 0.91
PTPRF-209ENST00000438120 NINLQ9Y2I6 1382 aa20.7■□□□□ 0.9
PTPRF-209ENST00000438120 GAS2L2Q8NHY3 880 aa20.7■□□□□ 0.9
PTPRF-209ENST00000438120 STK11IPQ8N1F8 1099 aa20.7■□□□□ 0.9
PTPRF-209ENST00000438120 IFT57Q9NWB7 429 aa20.7■□□□□ 0.9
PTPRF-209ENST00000438120 NOB1Q9ULX3 412 aaKnown RBP20.7■□□□□ 0.9
PTPRF-209ENST00000438120 FAM13BQ9NYF5 915 aa20.69■□□□□ 0.9
PTPRF-209ENST00000438120 RRP12Q5JTH9 1297 aaKnown RBP20.69■□□□□ 0.9
PTPRF-209ENST00000438120 KIF21BO75037 1637 aa20.69■□□□□ 0.9
PTPRF-209ENST00000438120 PLEKHO1Q53GL0 409 aaPredicted RBP20.69■□□□□ 0.9
PTPRF-209ENST00000438120 GPS2Q13227 327 aa20.68■□□□□ 0.9
PTPRF-209ENST00000438120 GNAI3P08754 354 aa20.68■□□□□ 0.9
PTPRF-209ENST00000438120 CNKSR2Q8WXI2 1034 aa20.68■□□□□ 0.9
PTPRF-209ENST00000438120 STAC3Q96MF2 364 aa20.68■□□□□ 0.9
PTPRF-209ENST00000438120 BCAR3O75815 825 aa20.68■□□□□ 0.9
PTPRF-209ENST00000438120 PDZRN3Q9UPQ7 1066 aa20.68■□□□□ 0.9
PTPRF-209ENST00000438120 BRD4O60885 1362 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-209ENST00000438120 SLC4A2P04920 1241 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 SULT6B1Q6IMI4 303 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 KIF6Q6ZMV9 814 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 PDILTQ8N807 584 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 RSPH6AQ9H0K4 717 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 SDF4Q9BRK5 362 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 CABP1Q9NZU7 370 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 NEK4P51957 841 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 NFKBIBQ15653 356 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 SIL1Q9H173 461 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 TBC1D2BQ9UPU7 963 aa20.67■□□□□ 0.9
PTPRF-209ENST00000438120 PSMA5P28066 241 aa20.66■□□□□ 0.9
PTPRF-209ENST00000438120 CDK19Q9BWU1 502 aa20.66■□□□□ 0.9
PTPRF-209ENST00000438120 MAP4K4O95819 1239 aaPredicted RBP20.66■□□□□ 0.9
PTPRF-209ENST00000438120 DDX54Q8TDD1 881 aaKnown RBP20.66■□□□□ 0.9
PTPRF-209ENST00000438120 BRMS1Q9HCU9 246 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms