RNA–Protein interactions for RNA: ENST00000431742.2

CSTF3-202, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 2 BASIC

Gene CSTF3, Length 715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-202ENST00000431742 TRAK1Q9UPV9 953 aa20.54■□□□□ 0.88
CSTF3-202ENST00000431742 PRAM1Q96QH2 718 aa20.52■□□□□ 0.88
CSTF3-202ENST00000431742 C19orf44Q9H6X5 657 aa20.52■□□□□ 0.88
CSTF3-202ENST00000431742 C14orf37Q86TY3 774 aa20.49■□□□□ 0.87
CSTF3-202ENST00000431742 CARD11Q9BXL7 1154 aa20.48■□□□□ 0.87
CSTF3-202ENST00000431742 RGPD8O14715 1765 aaPredicted RBP20.48■□□□□ 0.87
CSTF3-202ENST00000431742 EIF3AQ14152 1382 aaKnown RBP20.47■□□□□ 0.87
CSTF3-202ENST00000431742 MST1RQ04912 1400 aa20.47■□□□□ 0.87
CSTF3-202ENST00000431742 USP32Q8NFA0 1604 aa20.47■□□□□ 0.87
CSTF3-202ENST00000431742 POGKQ9P215 609 aa20.47■□□□□ 0.87
CSTF3-202ENST00000431742 ROBO1Q9Y6N7 1651 aa20.47■□□□□ 0.87
CSTF3-202ENST00000431742 UBAP1LF5GYI3 381 aa20.45■□□□□ 0.86
CSTF3-202ENST00000431742 CADPS2Q86UW7 1296 aa20.45■□□□□ 0.86
CSTF3-202ENST00000431742 CENPJQ9HC77 1338 aaPredicted RBP20.45■□□□□ 0.86
CSTF3-202ENST00000431742 TOM1O60784 492 aa20.44■□□□□ 0.86
CSTF3-202ENST00000431742 SAFB2Q14151 953 aaKnown RBP eCLIP20.44■□□□□ 0.86
CSTF3-202ENST00000431742 ATF3P18847 181 aa20.43■□□□□ 0.86
CSTF3-202ENST00000431742 SBNO2Q9Y2G9 1366 aa20.43■□□□□ 0.86
CSTF3-202ENST00000431742 TULP4Q9NRJ4 1543 aa20.43■□□□□ 0.86
CSTF3-202ENST00000431742 ITSN1Q15811 1721 aa20.42■□□□□ 0.86
CSTF3-202ENST00000431742 ADRA2BP18089 450 aa20.42■□□□□ 0.86
CSTF3-202ENST00000431742 FBXO41Q8TF61 875 aa20.42■□□□□ 0.86
CSTF3-202ENST00000431742 TOPAZ1Q8N9V7 1692 aa20.42■□□□□ 0.86
CSTF3-202ENST00000431742 MINK1Q8N4C8 1332 aaPredicted RBP20.41■□□□□ 0.86
CSTF3-202ENST00000431742 USP47Q96K76 1375 aa20.41■□□□□ 0.86
CSTF3-202ENST00000431742 C1orf167Q5SNV9 1468 aa20.41■□□□□ 0.86
CSTF3-202ENST00000431742 NHSL1Q5SYE7 1610 aa20.4■□□□□ 0.86
CSTF3-202ENST00000431742 KIF1AQ12756 1690 aa20.39■□□□□ 0.86
CSTF3-202ENST00000431742 PIAS4Q8N2W9 510 aaPredicted RBP20.39■□□□□ 0.85
CSTF3-202ENST00000431742 SLAIN2Q9P270 581 aa20.39■□□□□ 0.85
CSTF3-202ENST00000431742 ANKARQ7Z5J8 1434 aa20.38■□□□□ 0.85
CSTF3-202ENST00000431742 ATP7BP35670 1465 aa20.37■□□□□ 0.85
CSTF3-202ENST00000431742 HIRIP3Q9BW71 556 aaPredicted RBP20.37■□□□□ 0.85
CSTF3-202ENST00000431742 AHDC1Q5TGY3 1603 aaPredicted RBP20.36■□□□□ 0.85
CSTF3-202ENST00000431742 WASLO00401 505 aaPredicted RBP20.36■□□□□ 0.85
CSTF3-202ENST00000431742 PIP4K2BP78356 416 aa20.34■□□□□ 0.85
CSTF3-202ENST00000431742 PHLPP1O60346 1717 aa20.33■□□□□ 0.85
CSTF3-202ENST00000431742 PRR36Q9H6K5 1346 aa20.32■□□□□ 0.84
CSTF3-202ENST00000431742 ST20-MTHFSA0A0A6YYL1 179 aa20.32■□□□□ 0.84
CSTF3-202ENST00000431742 TESK2Q96S53 571 aa20.32■□□□□ 0.84
CSTF3-202ENST00000431742 COL16A1Q07092 1604 aaPredicted RBP20.31■□□□□ 0.84
CSTF3-202ENST00000431742 BRINP3Q76B58 766 aa20.31■□□□□ 0.84
CSTF3-202ENST00000431742 MSH5O43196 834 aa20.3■□□□□ 0.84
CSTF3-202ENST00000431742 CDK19Q9BWU1 502 aa20.3■□□□□ 0.84
CSTF3-202ENST00000431742 SCAF1Q9H7N4 1312 aaKnown RBP20.29■□□□□ 0.84
CSTF3-202ENST00000431742 EVC2Q86UK5 1308 aa20.28■□□□□ 0.84
CSTF3-202ENST00000431742 NUTM2FA1L443 756 aa20.28■□□□□ 0.84
CSTF3-202ENST00000431742 ORAI2Q96SN7 254 aa20.28■□□□□ 0.84
CSTF3-202ENST00000431742 EIF4G2P78344 907 aaKnown RBP eCLIP20.26■□□□□ 0.83
CSTF3-202ENST00000431742 AKAP12Q02952 1782 aa20.26■□□□□ 0.83
CSTF3-202ENST00000431742 NUDT16Q96DE0 195 aaKnown RBP20.25■□□□□ 0.83
CSTF3-202ENST00000431742 TRPM3Q9HCF6 1732 aaPredicted RBP20.24■□□□□ 0.83
CSTF3-202ENST00000431742 PXDNQ92626 1479 aa20.24■□□□□ 0.83
CSTF3-202ENST00000431742 DISP3Q9P2K9 1392 aa20.24■□□□□ 0.83
CSTF3-202ENST00000431742 MYOM1P52179 1685 aa20.24■□□□□ 0.83
CSTF3-202ENST00000431742 HSPA5P11021 654 aaKnown RBP20.24■□□□□ 0.83
CSTF3-202ENST00000431742 ESCO1Q5FWF5 840 aa20.24■□□□□ 0.83
CSTF3-202ENST00000431742 ILDR1Q86SU0 546 aaPredicted RBP20.24■□□□□ 0.83
CSTF3-202ENST00000431742 SLC24A1O60721 1099 aa20.23■□□□□ 0.83
CSTF3-202ENST00000431742 SRPK2P78362 688 aaKnown RBP20.23■□□□□ 0.83
CSTF3-202ENST00000431742 CABP2Q9NPB3 220 aa20.23■□□□□ 0.83
CSTF3-202ENST00000431742 ZEB1P37275 1124 aaPredicted RBP20.22■□□□□ 0.83
CSTF3-202ENST00000431742 SHPRHQ149N8 1683 aa20.22■□□□□ 0.83
CSTF3-202ENST00000431742 MON2Q7Z3U7 1717 aa20.22■□□□□ 0.83
CSTF3-202ENST00000431742 ATAD2Q6PL18 1390 aa20.21■□□□□ 0.83
CSTF3-202ENST00000431742 PPIP5K1Q6PFW1 1433 aa20.21■□□□□ 0.83
CSTF3-202ENST00000431742 HSPA1LP34931 641 aa20.21■□□□□ 0.83
CSTF3-202ENST00000431742 PUS7Q96PZ0 661 aaKnown RBP20.21■□□□□ 0.83
CSTF3-202ENST00000431742 PHF8Q9UPP1 1060 aa20.21■□□□□ 0.83
CSTF3-202ENST00000431742 CCDC61Q9Y6R9 512 aa20.21■□□□□ 0.83
CSTF3-202ENST00000431742 POLR3AO14802 1390 aaPredicted RBP20.2■□□□□ 0.82
CSTF3-202ENST00000431742 NPHP3Q7Z494 1330 aa20.19■□□□□ 0.82
CSTF3-202ENST00000431742 ALS2Q96Q42 1657 aa20.19■□□□□ 0.82
CSTF3-202ENST00000431742 NRKQ7Z2Y5 1582 aa20.18■□□□□ 0.82
CSTF3-202ENST00000431742 PLEKHG3A1L390 1219 aa20.18■□□□□ 0.82
CSTF3-202ENST00000431742 TMF1P82094 1093 aa20.18■□□□□ 0.82
CSTF3-202ENST00000431742 DDX17Q92841 729 aaKnown RBP20.18■□□□□ 0.82
CSTF3-202ENST00000431742 SOS2Q07890 1332 aaPredicted RBP20.18■□□□□ 0.82
CSTF3-202ENST00000431742 COL22A1Q8NFW1 1626 aaPredicted RBP20.16■□□□□ 0.82
CSTF3-202ENST00000431742 FOXO3O43524 673 aa20.16■□□□□ 0.82
CSTF3-202ENST00000431742 PMFBP1Q8TBY8 1022 aa20.16■□□□□ 0.82
CSTF3-202ENST00000431742 CD163L1Q9NR16 1453 aa20.15■□□□□ 0.82
CSTF3-202ENST00000431742 NINLQ9Y2I6 1382 aa20.14■□□□□ 0.81
CSTF3-202ENST00000431742 CPSF1Q10570 1443 aaKnown RBP20.13■□□□□ 0.81
CSTF3-202ENST00000431742 ACEP12821 1306 aa20.13■□□□□ 0.81
CSTF3-202ENST00000431742 ABCA3Q99758 1704 aa20.13■□□□□ 0.81
CSTF3-202ENST00000431742 CRYBG1Q9Y4K1 1723 aa20.13■□□□□ 0.81
CSTF3-202ENST00000431742 CDCA8Q53HL2 280 aa20.12■□□□□ 0.81
CSTF3-202ENST00000431742 CABP1Q9NZU7 370 aa20.12■□□□□ 0.81
CSTF3-202ENST00000431742 SBNO1A3KN83 1393 aa20.11■□□□□ 0.81
CSTF3-202ENST00000431742 NGDNQ8NEJ9 315 aaKnown RBP20.11■□□□□ 0.81
CSTF3-202ENST00000431742 USP6P35125 1406 aa20.1■□□□□ 0.81
CSTF3-202ENST00000431742 TNS3Q68CZ2 1445 aa20.1■□□□□ 0.81
CSTF3-202ENST00000431742 XPCQ01831 940 aaPredicted RBP20.1■□□□□ 0.81
CSTF3-202ENST00000431742 KRT28Q7Z3Y7 464 aa20.1■□□□□ 0.81
CSTF3-202ENST00000431742 JCADQ9P266 1359 aa20.09■□□□□ 0.81
CSTF3-202ENST00000431742 SSH2Q76I76 1423 aa20.09■□□□□ 0.81
CSTF3-202ENST00000431742 BRD4O60885 1362 aaPredicted RBP20.08■□□□□ 0.81
CSTF3-202ENST00000431742 PNPLA6Q8IY17 1366 aa20.08■□□□□ 0.81
CSTF3-202ENST00000431742 MED1Q15648 1581 aaPredicted RBP20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms