RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 NUTM2AQ8IVF1 878 aaPredicted RBP7.06□□□□□ -1.28
HMGB3-203ENST00000430118 RDH13Q8NBN7 331 aa7.06□□□□□ -1.28
HMGB3-203ENST00000430118 GLMNQ92990 594 aa7.06□□□□□ -1.28
HMGB3-203ENST00000430118 TBC1D2BQ9UPU7 963 aa7.06□□□□□ -1.28
HMGB3-203ENST00000430118 FDX1P10109 184 aa7.05□□□□□ -1.28
HMGB3-203ENST00000430118 NDUFV2P19404 249 aa7.05□□□□□ -1.28
HMGB3-203ENST00000430118 SLC4A3P48751 1232 aa7.05□□□□□ -1.28
HMGB3-203ENST00000430118 RTL5Q5HYW3 569 aaPredicted RBP7.05□□□□□ -1.28
HMGB3-203ENST00000430118 NPM2Q86SE8 214 aaKnown RBP7.05□□□□□ -1.28
HMGB3-203ENST00000430118 RETREG2Q8NC44 543 aa7.05□□□□□ -1.28
HMGB3-203ENST00000430118 GJD4Q96KN9 370 aaPredicted RBP7.05□□□□□ -1.28
HMGB3-203ENST00000430118 PCDHB15Q9Y5E8 787 aa7.05□□□□□ -1.28
HMGB3-203ENST00000430118 CSPP1Q1MSJ5 1256 aa7.04□□□□□ -1.28
HMGB3-203ENST00000430118 GRIPAP1Q4V328 841 aa7.04□□□□□ -1.28
HMGB3-203ENST00000430118 HELBQ8NG08 1087 aaPredicted RBP7.04□□□□□ -1.28
HMGB3-203ENST00000430118 SLC4A5Q9BY07 1137 aa7.04□□□□□ -1.28
HMGB3-203ENST00000430118 ZCCHC6Q5VYS8 1495 aaKnown RBP7.04□□□□□ -1.28
HMGB3-203ENST00000430118 C3orf80F5H4A9 247 aa7.03□□□□□ -1.28
HMGB3-203ENST00000430118 SOX11P35716 441 aa7.03□□□□□ -1.28
HMGB3-203ENST00000430118 USTQ9Y2C2 406 aa7.03□□□□□ -1.28
HMGB3-203ENST00000430118 MTMR2Q13614 643 aa7.02□□□□□ -1.29
HMGB3-203ENST00000430118 PBXIP1Q96AQ6 731 aa7.02□□□□□ -1.29
HMGB3-203ENST00000430118 HDGFP51858 240 aaKnown RBP7.01□□□□□ -1.29
HMGB3-203ENST00000430118 IRF5Q13568 498 aa7.01□□□□□ -1.29
HMGB3-203ENST00000430118 CABLES1Q8TDN4 633 aa7.01□□□□□ -1.29
HMGB3-203ENST00000430118 ZBED2Q9BTP6 218 aa7.01□□□□□ -1.29
HMGB3-203ENST00000430118 RABGEF1Q9UJ41 708 aa7.01□□□□□ -1.29
HMGB3-203ENST00000430118 POM121CA8CG34 1229 aa7□□□□□ -1.29
HMGB3-203ENST00000430118 RNF166Q96A37 237 aaPredicted RBP7□□□□□ -1.29
HMGB3-203ENST00000430118 PROX2Q3B8N5 592 aa6.99□□□□□ -1.29
HMGB3-203ENST00000430118 ANKRD13DQ6ZTN6 518 aa6.99□□□□□ -1.29
HMGB3-203ENST00000430118 SLF2Q8IX21 1173 aa6.99□□□□□ -1.29
HMGB3-203ENST00000430118 KCNK17Q96T54 332 aa6.99□□□□□ -1.29
HMGB3-203ENST00000430118 TRIM34Q9BYJ4 488 aa6.99□□□□□ -1.29
HMGB3-203ENST00000430118 MYT1LQ9UL68 1186 aa6.99□□□□□ -1.29
HMGB3-203ENST00000430118 PCDHGC3Q9UN70 934 aa6.99□□□□□ -1.29
HMGB3-203ENST00000430118 GPR37L1O60883 481 aa6.98□□□□□ -1.29
HMGB3-203ENST00000430118 SLC10A3P09131 477 aa6.98□□□□□ -1.29
HMGB3-203ENST00000430118 HDGFL1Q5TGJ6 251 aa6.98□□□□□ -1.29
HMGB3-203ENST00000430118 KIAA1468Q9P260 1216 aa6.98□□□□□ -1.29
HMGB3-203ENST00000430118 SMAPO00193 183 aa6.97□□□□□ -1.29
HMGB3-203ENST00000430118 BRD1O95696 1058 aa6.97□□□□□ -1.29
HMGB3-203ENST00000430118 KCNA1Q09470 495 aa6.97□□□□□ -1.29
HMGB3-203ENST00000430118 FAM98CQ17RN3 349 aaKnown RBP6.97□□□□□ -1.29
HMGB3-203ENST00000430118 SWT1Q5T5J6 900 aaKnown RBP6.97□□□□□ -1.29
HMGB3-203ENST00000430118 LAPTM4BQ86VI4 370 aa6.97□□□□□ -1.29
HMGB3-203ENST00000430118 AEBP1Q8IUX7 1158 aa6.97□□□□□ -1.29
HMGB3-203ENST00000430118 PNMA1Q8ND90 353 aa6.97□□□□□ -1.29
HMGB3-203ENST00000430118 CTDSPL2Q05D32 466 aa6.96□□□□□ -1.3
HMGB3-203ENST00000430118 DESI1Q6ICB0 168 aa6.96□□□□□ -1.3
HMGB3-203ENST00000430118 ADAMTS19Q8TE59 1207 aa6.96□□□□□ -1.3
HMGB3-203ENST00000430118 ALG2Q9H553 416 aa6.96□□□□□ -1.3
HMGB3-203ENST00000430118 HMX1Q9NP08 348 aaPredicted RBP6.96□□□□□ -1.3
HMGB3-203ENST00000430118 CSB-PGBD3P0DP91 1061 aa6.95□□□□□ -1.3
HMGB3-203ENST00000430118 ATP6V1AP38606 617 aa6.95□□□□□ -1.3
HMGB3-203ENST00000430118 PBX2P40425 430 aa6.95□□□□□ -1.3
HMGB3-203ENST00000430118 SRPK2P78362 688 aaKnown RBP6.95□□□□□ -1.3
HMGB3-203ENST00000430118 LSM11P83369 360 aaKnown RBP eCLIP6.95□□□□□ -1.3
HMGB3-203ENST00000430118 CFAP70Q5T0N1 1121 aa6.95□□□□□ -1.3
HMGB3-203ENST00000430118 PPP1R12CQ9BZL4 782 aa6.95□□□□□ -1.3
HMGB3-203ENST00000430118 CFAP99D6REC4 459 aa6.94□□□□□ -1.3
HMGB3-203ENST00000430118 ARHGAP33O14559 1287 aa6.94□□□□□ -1.3
HMGB3-203ENST00000430118 KMT5BQ4FZB7 885 aa6.94□□□□□ -1.3
HMGB3-203ENST00000430118 TMCO4Q5TGY1 634 aa6.94□□□□□ -1.3
HMGB3-203ENST00000430118 C6orf229H3BNL8 230 aa6.93□□□□□ -1.3
HMGB3-203ENST00000430118 FUT2Q10981 343 aa6.93□□□□□ -1.3
HMGB3-203ENST00000430118 POTEEQ6S8J3 1075 aa6.93□□□□□ -1.3
HMGB3-203ENST00000430118 RETREG3Q86VR2 466 aa6.93□□□□□ -1.3
HMGB3-203ENST00000430118 PRR14Q9BWN1 585 aa6.93□□□□□ -1.3
HMGB3-203ENST00000430118 AXIN2Q9Y2T1 843 aa6.93□□□□□ -1.3
HMGB3-203ENST00000430118 CFHP08603 1231 aa6.92□□□□□ -1.3
HMGB3-203ENST00000430118 GUCA2AQ02747 115 aa6.92□□□□□ -1.3
HMGB3-203ENST00000430118 Q3C1V9 767 aa6.92□□□□□ -1.3
HMGB3-203ENST00000430118 LRRN4Q8WUT4 740 aa6.92□□□□□ -1.3
HMGB3-203ENST00000430118 NBPF3Q9H094 633 aa6.92□□□□□ -1.3
HMGB3-203ENST00000430118 PALM3A6NDB9 673 aaPredicted RBP6.91□□□□□ -1.3
HMGB3-203ENST00000430118 ATG7O95352 703 aa6.91□□□□□ -1.3
HMGB3-203ENST00000430118 EIF4G2P78344 907 aaKnown RBP eCLIP6.91□□□□□ -1.3
HMGB3-203ENST00000430118 VAC14Q08AM6 782 aa6.91□□□□□ -1.3
HMGB3-203ENST00000430118 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.9□□□□□ -1.3
HMGB3-203ENST00000430118 SEMA3FQ13275 785 aa6.9□□□□□ -1.3
HMGB3-203ENST00000430118 PRR7Q8TB68 274 aa6.9□□□□□ -1.3
HMGB3-203ENST00000430118 TSC1Q92574 1164 aa6.9□□□□□ -1.3
HMGB3-203ENST00000430118 ZNF592Q92610 1267 aa6.9□□□□□ -1.3
HMGB3-203ENST00000430118 HLA-CQ95604 372 aa6.9□□□□□ -1.3
HMGB3-203ENST00000430118 ZC3H4Q9UPT8 1303 aaKnown RBP6.9□□□□□ -1.3
HMGB3-203ENST00000430118 B4GALNT3Q6L9W6 998 aa6.89□□□□□ -1.31
HMGB3-203ENST00000430118 NFATC2IPQ8NCF5 419 aa6.89□□□□□ -1.31
HMGB3-203ENST00000430118 GZF1Q9H116 711 aaPredicted RBP6.89□□□□□ -1.31
HMGB3-203ENST00000430118 SEPT9Q9UHD8 586 aaPredicted RBP6.89□□□□□ -1.31
HMGB3-203ENST00000430118 SALL2Q9Y467 1007 aaPredicted RBP6.89□□□□□ -1.31
HMGB3-203ENST00000430118 ACTN4O43707 911 aaKnown RBP6.88□□□□□ -1.31
HMGB3-203ENST00000430118 PSEN2P49810 448 aa6.88□□□□□ -1.31
HMGB3-203ENST00000430118 MFAP1P55081 439 aaKnown RBP6.88□□□□□ -1.31
HMGB3-203ENST00000430118 SAMD7Q7Z3H4 446 aa6.88□□□□□ -1.31
HMGB3-203ENST00000430118 RGS22Q8NE09 1264 aa6.88□□□□□ -1.31
HMGB3-203ENST00000430118 UCN2Q96RP3 112 aa6.88□□□□□ -1.31
HMGB3-203ENST00000430118 VPS9D1Q9Y2B5 631 aa6.88□□□□□ -1.31
HMGB3-203ENST00000430118 NCAPD3P42695 1498 aa6.87□□□□□ -1.31
HMGB3-203ENST00000430118 TK2O00142 265 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms