RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 CD109Q6YHK3 1445 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 SAMD1Q6SPF0 538 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 KRT28Q7Z3Y7 464 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 MKNK1Q9BUB5 465 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 KDM6BO15054 1643 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 CC2D2AQ9P2K1 1620 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 CNGB1Q14028 1251 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 TAOK1Q7L7X3 1001 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 C19orf44Q9H6X5 657 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 TCERG1O14776 1098 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 TNNT2P45379 298 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 FSTL1Q12841 308 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 NOL8Q76FK4 1167 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 FAM161BQ96MY7 647 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 LGR6Q9HBX8 967 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 PRDM5Q9NQX1 630 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 NACADO15069 1562 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 NOTCH2Q04721 2471 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 POLA2Q14181 598 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 DALRD3Q5D0E6 543 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 DCPSQ96C86 337 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 FOXD4L1Q9NU39 408 aa3.7□□□□□ -1.82
CCDC88A-205ENST00000426576 RBM5P52756 815 aaKnown RBP eCLIP3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 ERFEQ4G0M1 354 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 GJD4Q96KN9 370 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 ARHGEF11O15085 1522 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 KIF28PB7ZC32 967 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 TFRCP02786 760 aaKnown RBP3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 RAET1EQ8TD07 263 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 BICRAQ9NZM4 1560 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 SPTAN1Q13813 2472 aaKnown RBP3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 FOXO3O43524 673 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 COL9A1P20849 921 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 BMS1Q14692 1282 aaKnown RBP3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 SYT17Q9BSW7 474 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 ZBED2Q9BTP6 218 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 HEMK1Q9Y5R4 338 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 CNOT1A5YKK6 2376 aaKnown RBP3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 CLSPNQ9HAW4 1339 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 RAB3GAP2Q9H2M9 1393 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 SOGA1O94964 1423 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 KCNJ4P48050 445 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 CHMP4BP1P59074 171 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 FOXK2Q01167 660 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 LCE2DQ5TA82 110 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 FAM200AQ8TCP9 573 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 NBPF3Q9H094 633 aa3.69□□□□□ -1.82
CCDC88A-205ENST00000426576 EIF5P55010 431 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 SLC9C1Q4G0N8 1177 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 NKX2-3Q8TAU0 364 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 BCL11AQ9H165 835 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 WDR7Q9Y4E6 1490 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 TTC21AQ8NDW8 1320 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 ZNF318Q5VUA4 2279 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 PTPN5P54829 565 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 CABLES1Q8TDN4 633 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 SLC16A10Q8TF71 515 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 TSKSQ9UJT2 592 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 TRIM17Q9Y577 477 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 EIF4G1Q04637 1599 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 MYO1BO43795 1136 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 TRPA1O75762 1119 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 ZC3H6P61129 1189 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 EZH2Q15910 746 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 UBE2OQ9C0C9 1292 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 NOD1Q9Y239 953 aa3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 ACIN1Q9UKV3 1341 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-205ENST00000426576 ZBBXA8MT70 800 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 TBC1D8O95759 1140 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 ZNF157P51786 506 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 HUNKP57058 714 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 VEZTQ9HBM0 779 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 NCDNQ9UBB6 729 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 CACNA1AO00555 2505 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 FOSL2P15408 326 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 OGFOD1Q8N543 542 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 TMC1Q8TDI8 760 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 UPF3BQ9BZI7 483 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 PRG4Q92954 1404 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 FANCAO15360 1455 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 TMEM88BA6NKF7 163 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 TBC1D9Q6ZT07 1266 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 PNMA8AQ86V59 439 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 P2RX7Q99572 595 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 ZBTB47Q9UFB7 747 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 NINLQ9Y2I6 1382 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 KAT6BQ8WYB5 2073 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 H0YIN7 160 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 FAM182BQ5T319 152 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 IL31Q6EBC2 164 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 CCDC102AQ96A19 550 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 PRDM10Q9NQV6 1147 aa3.67□□□□□ -1.82
CCDC88A-205ENST00000426576 CLSTN1O94985 981 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 ATXN8OSP0DMR3 200 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 AMPHP49418 695 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 TMEM31Q5JXX7 168 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 SOGA3Q5TF21 947 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 CHRDL2Q6WN34 429 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 UNC5CLQ8IV45 518 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms