RNA–Protein interactions for RNA: ENST00000423442.6

LINC00458-201, long intergenic non-protein coding RNA 458, humanhuman

TSL 1 (best) BASIC

Gene LINC00458, Length 1,060 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-201ENST00000423442 CD2BP2O95400 341 aaKnown RBP11.2□□□□□ -0.62
LINC00458-201ENST00000423442 AAASQ9NRG9 546 aa11.2□□□□□ -0.62
LINC00458-201ENST00000423442 LMOD2Q6P5Q4 547 aa11.19□□□□□ -0.62
LINC00458-201ENST00000423442 DCAF1Q9Y4B6 1507 aa11.19□□□□□ -0.62
LINC00458-201ENST00000423442 ZCCHC6Q5VYS8 1495 aaKnown RBP11.19□□□□□ -0.62
LINC00458-201ENST00000423442 CD46P15529 392 aa11.17□□□□□ -0.62
LINC00458-201ENST00000423442 MAP2K5Q13163 448 aa11.17□□□□□ -0.62
LINC00458-201ENST00000423442 GRIPAP1Q4V328 841 aa11.17□□□□□ -0.62
LINC00458-201ENST00000423442 MSS51Q4VC12 460 aa11.17□□□□□ -0.62
LINC00458-201ENST00000423442 TOR4AQ9NXH8 423 aa11.17□□□□□ -0.62
LINC00458-201ENST00000423442 CYP4X1Q8N118 509 aa11.15□□□□□ -0.62
LINC00458-201ENST00000423442 IRF6O14896 467 aa11.14□□□□□ -0.63
LINC00458-201ENST00000423442 MDM2Q00987 491 aaPredicted RBP11.14□□□□□ -0.63
LINC00458-201ENST00000423442 HLA-CQ95604 372 aa11.14□□□□□ -0.63
LINC00458-201ENST00000423442 DACH1Q9UI36 760 aa11.14□□□□□ -0.63
LINC00458-201ENST00000423442 ZBTB24O43167 697 aaPredicted RBP11.13□□□□□ -0.63
LINC00458-201ENST00000423442 KDM4AO75164 1064 aa11.12□□□□□ -0.63
LINC00458-201ENST00000423442 Q3C1V9 767 aa11.12□□□□□ -0.63
LINC00458-201ENST00000423442 LCE2AQ5TA79 106 aaPredicted RBP11.12□□□□□ -0.63
LINC00458-201ENST00000423442 TREML4Q6UXN2 200 aa11.12□□□□□ -0.63
LINC00458-201ENST00000423442 CRIPAKQ8N1N5 446 aa11.12□□□□□ -0.63
LINC00458-201ENST00000423442 AVPP01185 164 aa11.1□□□□□ -0.63
LINC00458-201ENST00000423442 MMP16P51512 607 aa11.1□□□□□ -0.63
LINC00458-201ENST00000423442 USB1Q9BQ65 265 aaKnown RBP11.09□□□□□ -0.63
LINC00458-201ENST00000423442 MINK1Q8N4C8 1332 aaPredicted RBP11.09□□□□□ -0.63
LINC00458-201ENST00000423442 TTC24A2A3L6 582 aaPredicted RBP11.08□□□□□ -0.64
LINC00458-201ENST00000423442 TRIM32Q13049 653 aa11.08□□□□□ -0.64
LINC00458-201ENST00000423442 CCDC102AQ96A19 550 aa11.08□□□□□ -0.64
LINC00458-201ENST00000423442 TULP1O00294 542 aaPredicted RBP11.07□□□□□ -0.64
LINC00458-201ENST00000423442 AXIN1O15169 862 aa11.07□□□□□ -0.64
LINC00458-201ENST00000423442 WNT7AO00755 349 aa11.06□□□□□ -0.64
LINC00458-201ENST00000423442 DXOO77932 396 aaKnown RBP11.06□□□□□ -0.64
LINC00458-201ENST00000423442 GUCA2AQ02747 115 aa11.06□□□□□ -0.64
LINC00458-201ENST00000423442 HOXA2O43364 376 aa11.05□□□□□ -0.64
LINC00458-201ENST00000423442 GMPR2Q9P2T1 348 aaKnown RBP11.05□□□□□ -0.64
LINC00458-201ENST00000423442 CUX2O14529 1486 aa11.05□□□□□ -0.64
LINC00458-201ENST00000423442 SMPD1P17405 629 aa11.04□□□□□ -0.64
LINC00458-201ENST00000423442 USP46P62068 366 aa11.04□□□□□ -0.64
LINC00458-201ENST00000423442 VSIG10Q8N0Z9 540 aa11.04□□□□□ -0.64
LINC00458-201ENST00000423442 CCDC24Q8N4L8 307 aa11.04□□□□□ -0.64
LINC00458-201ENST00000423442 MRGPRX2Q96LB1 330 aa11.04□□□□□ -0.64
LINC00458-201ENST00000423442 CTC1Q2NKJ3 1217 aa11.03□□□□□ -0.64
LINC00458-201ENST00000423442 SYMPKQ92797 1274 aaKnown RBP11.03□□□□□ -0.64
LINC00458-201ENST00000423442 SNIP1Q8TAD8 396 aaKnown RBP11.02□□□□□ -0.65
LINC00458-201ENST00000423442 GPCPD1Q9NPB8 672 aa11.02□□□□□ -0.65
LINC00458-201ENST00000423442 FAM217BQ9NTX9 383 aaPredicted RBP11.02□□□□□ -0.65
LINC00458-201ENST00000423442 J3QL48 77 aa11.01□□□□□ -0.65
LINC00458-201ENST00000423442 SMCPP49901 116 aaPredicted RBP11.01□□□□□ -0.65
LINC00458-201ENST00000423442 C11orf95C9JLR9 678 aaPredicted RBP11□□□□□ -0.65
LINC00458-201ENST00000423442 CLCN1P35523 988 aa11□□□□□ -0.65
LINC00458-201ENST00000423442 SKOR1P84550 965 aa10.98□□□□□ -0.65
LINC00458-201ENST00000423442 REPIN1Q9BWE0 567 aaKnown RBP10.98□□□□□ -0.65
LINC00458-201ENST00000423442 RC3H1Q5TC82 1133 aaKnown RBP10.97□□□□□ -0.65
LINC00458-201ENST00000423442 ERCC6Q03468 1493 aa10.97□□□□□ -0.65
LINC00458-201ENST00000423442 WFS1O76024 890 aa10.96□□□□□ -0.65
LINC00458-201ENST00000423442 JUNDP17535 347 aa10.96□□□□□ -0.65
LINC00458-201ENST00000423442 NUTM1Q86Y26 1132 aa10.96□□□□□ -0.65
LINC00458-201ENST00000423442 KRI1Q8N9T8 703 aaKnown RBP10.96□□□□□ -0.65
LINC00458-201ENST00000423442 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.95□□□□□ -0.66
LINC00458-201ENST00000423442 HPS1Q92902 700 aa10.95□□□□□ -0.66
LINC00458-201ENST00000423442 ATP13A2Q9NQ11 1180 aa10.94□□□□□ -0.66
LINC00458-201ENST00000423442 PCDHGC3Q9UN70 934 aa10.94□□□□□ -0.66
LINC00458-201ENST00000423442 PTCRAQ6ISU1 281 aaPredicted RBP10.93□□□□□ -0.66
LINC00458-201ENST00000423442 WNT7BP56706 349 aa10.92□□□□□ -0.66
LINC00458-201ENST00000423442 NFX1Q12986 1120 aaKnown RBP10.92□□□□□ -0.66
LINC00458-201ENST00000423442 RETREG3Q86VR2 466 aa10.92□□□□□ -0.66
LINC00458-201ENST00000423442 FDX1P10109 184 aa10.91□□□□□ -0.66
LINC00458-201ENST00000423442 SNRPBP14678 240 aaKnown RBP10.91□□□□□ -0.66
LINC00458-201ENST00000423442 NUDT12Q9BQG2 462 aa10.91□□□□□ -0.66
LINC00458-201ENST00000423442 SSTR3P32745 418 aaPredicted RBP10.9□□□□□ -0.66
LINC00458-201ENST00000423442 C6orf229H3BNL8 230 aa10.89□□□□□ -0.67
LINC00458-201ENST00000423442 ALDH1A1P00352 501 aa10.89□□□□□ -0.67
LINC00458-201ENST00000423442 WIPF1O43516 503 aa10.88□□□□□ -0.67
LINC00458-201ENST00000423442 NDUFV2P19404 249 aa10.88□□□□□ -0.67
LINC00458-201ENST00000423442 SPIRE2Q8WWL2 714 aa10.88□□□□□ -0.67
LINC00458-201ENST00000423442 TRIM47Q96LD4 638 aa10.86□□□□□ -0.67
LINC00458-201ENST00000423442 STK17AQ9UEE5 414 aa10.86□□□□□ -0.67
LINC00458-201ENST00000423442 NCAPD3P42695 1498 aa10.86□□□□□ -0.67
LINC00458-201ENST00000423442 MOXD2PA6NHM9 499 aa10.85□□□□□ -0.67
LINC00458-201ENST00000423442 SIAH2O43255 324 aa10.85□□□□□ -0.67
LINC00458-201ENST00000423442 MS4A1P11836 297 aa10.85□□□□□ -0.67
LINC00458-201ENST00000423442 TTLL12Q14166 644 aaPredicted RBP10.85□□□□□ -0.67
LINC00458-201ENST00000423442 BARGINQ6ZT62 677 aa10.84□□□□□ -0.67
LINC00458-201ENST00000423442 EHBP1Q8NDI1 1231 aa10.84□□□□□ -0.67
LINC00458-201ENST00000423442 SENP2Q9HC62 589 aa10.84□□□□□ -0.67
LINC00458-201ENST00000423442 CCNYL3P0C7X3 344 aa10.83□□□□□ -0.68
LINC00458-201ENST00000423442 SH3BP2P78314 561 aa10.83□□□□□ -0.68
LINC00458-201ENST00000423442 INSM1Q01101 510 aaPredicted RBP10.83□□□□□ -0.68
LINC00458-201ENST00000423442 NESP48681 1621 aa10.83□□□□□ -0.68
LINC00458-201ENST00000423442 ZMYND10O75800 440 aa10.82□□□□□ -0.68
LINC00458-201ENST00000423442 LCE2CQ5TA81 110 aa10.82□□□□□ -0.68
LINC00458-201ENST00000423442 TERTO14746 1132 aaKnown RBP10.81□□□□□ -0.68
LINC00458-201ENST00000423442 GIGYF2Q6Y7W6 1299 aaKnown RBP10.81□□□□□ -0.68
LINC00458-201ENST00000423442 AMHR2Q16671 573 aa10.8□□□□□ -0.68
LINC00458-201ENST00000423442 PTPRNQ16849 979 aa10.8□□□□□ -0.68
LINC00458-201ENST00000423442 LINC01559Q495D7 138 aa10.8□□□□□ -0.68
LINC00458-201ENST00000423442 PRR7Q8TB68 274 aa10.8□□□□□ -0.68
LINC00458-201ENST00000423442 ZC3H15Q8WU90 426 aaKnown RBP10.79□□□□□ -0.68
LINC00458-201ENST00000423442 UNC93B1Q9H1C4 597 aa10.79□□□□□ -0.68
LINC00458-201ENST00000423442 EVA1BQ9NVM1 165 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms