RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 JPH4Q96JJ6 628 aa13.54□□□□□ -0.24
USP54-204ENST00000422491 PHF23Q9BUL5 403 aaPredicted RBP13.54□□□□□ -0.24
USP54-204ENST00000422491 IQSEC2Q5JU85 1478 aa13.54□□□□□ -0.24
USP54-204ENST00000422491 TTC37Q6PGP7 1564 aa13.54□□□□□ -0.24
USP54-204ENST00000422491 SHPRHQ149N8 1683 aa13.53□□□□□ -0.24
USP54-204ENST00000422491 MFAP1P55081 439 aaKnown RBP13.53□□□□□ -0.24
USP54-204ENST00000422491 GAS2L3Q86XJ1 694 aa13.52□□□□□ -0.24
USP54-204ENST00000422491 TPM2P07951 284 aa13.52□□□□□ -0.25
USP54-204ENST00000422491 CARD14Q9BXL6 1004 aa13.52□□□□□ -0.25
USP54-204ENST00000422491 HSCBQ8IWL3 235 aa13.51□□□□□ -0.25
USP54-204ENST00000422491 BCL2L13Q9BXK5 485 aa13.51□□□□□ -0.25
USP54-204ENST00000422491 SHROOM2Q13796 1616 aa13.51□□□□□ -0.25
USP54-204ENST00000422491 TRIM44Q96DX7 344 aaPredicted RBP13.5□□□□□ -0.25
USP54-204ENST00000422491 ERCC6Q03468 1493 aa13.5□□□□□ -0.25
USP54-204ENST00000422491 MVPQ14764 893 aaKnown RBP13.5□□□□□ -0.25
USP54-204ENST00000422491 KANK1Q14678 1352 aa13.5□□□□□ -0.25
USP54-204ENST00000422491 ERVK-7P63135 1459 aa13.5□□□□□ -0.25
USP54-204ENST00000422491 CHMP7Q8WUX9 453 aaPredicted RBP13.49□□□□□ -0.25
USP54-204ENST00000422491 WDR63Q8IWG1 891 aa13.49□□□□□ -0.25
USP54-204ENST00000422491 TNPO1Q92973 898 aaKnown RBP13.49□□□□□ -0.25
USP54-204ENST00000422491 RUNDC1Q96C34 613 aa13.49□□□□□ -0.25
USP54-204ENST00000422491 SMC5Q8IY18 1101 aa13.48□□□□□ -0.25
USP54-204ENST00000422491 SNX21Q969T3 373 aa13.48□□□□□ -0.25
USP54-204ENST00000422491 STAC3Q96MF2 364 aa13.48□□□□□ -0.25
USP54-204ENST00000422491 PDCL3Q9H2J4 239 aa13.48□□□□□ -0.25
USP54-204ENST00000422491 RRP7AQ9Y3A4 280 aaKnown RBP13.48□□□□□ -0.25
USP54-204ENST00000422491 NEUROD2Q15784 382 aa13.48□□□□□ -0.25
USP54-204ENST00000422491 TCP11L2Q8N4U5 519 aa13.48□□□□□ -0.25
USP54-204ENST00000422491 TRPM2O94759 1503 aa13.48□□□□□ -0.25
USP54-204ENST00000422491 KIAA1210Q9ULL0 1709 aa13.48□□□□□ -0.25
USP54-204ENST00000422491 RBM25P49756 843 aaKnown RBP13.47□□□□□ -0.25
USP54-204ENST00000422491 CIZ1Q9ULV3 898 aaPredicted RBP13.47□□□□□ -0.25
USP54-204ENST00000422491 ARHGAP5Q13017 1502 aa13.47□□□□□ -0.25
USP54-204ENST00000422491 HDAC1Q13547 482 aaPredicted RBP13.46□□□□□ -0.25
USP54-204ENST00000422491 RAB3GAP1Q15042 981 aa13.46□□□□□ -0.25
USP54-204ENST00000422491 CCDC27Q2M243 656 aa13.46□□□□□ -0.26
USP54-204ENST00000422491 SKOR2Q2VWA4 1001 aaPredicted RBP13.45□□□□□ -0.26
USP54-204ENST00000422491 GBP4Q96PP9 640 aa13.45□□□□□ -0.26
USP54-204ENST00000422491 PPP1R9BQ96SB3 815 aa13.45□□□□□ -0.26
USP54-204ENST00000422491 CLTCL1P53675 1640 aa13.45□□□□□ -0.26
USP54-204ENST00000422491 ZKSCAN2Q63HK3 967 aa13.44□□□□□ -0.26
USP54-204ENST00000422491 KIAA1211Q6ZU35 1233 aa13.44□□□□□ -0.26
USP54-204ENST00000422491 DZIP1LQ8IYY4 767 aaKnown RBP13.44□□□□□ -0.26
USP54-204ENST00000422491 CCDC173Q0VFZ6 552 aa13.44□□□□□ -0.26
USP54-204ENST00000422491 PTPRTO14522 1441 aa13.43□□□□□ -0.26
USP54-204ENST00000422491 SLC24A1O60721 1099 aa13.43□□□□□ -0.26
USP54-204ENST00000422491 PTMSP20962 102 aa13.43□□□□□ -0.26
USP54-204ENST00000422491 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.43□□□□□ -0.26
USP54-204ENST00000422491 FTSJ3Q8IY81 847 aaKnown RBP13.43□□□□□ -0.26
USP54-204ENST00000422491 ZSCAN30Q86W11 494 aa13.42□□□□□ -0.26
USP54-204ENST00000422491 OFD1O75665 1012 aa13.41□□□□□ -0.26
USP54-204ENST00000422491 NCBP3Q53F19 620 aaKnown RBP13.41□□□□□ -0.26
USP54-204ENST00000422491 IBTKQ9P2D0 1353 aaPredicted RBP13.41□□□□□ -0.26
USP54-204ENST00000422491 FBLN2P98095 1184 aa13.41□□□□□ -0.26
USP54-204ENST00000422491 KIF2CQ99661 725 aa13.41□□□□□ -0.26
USP54-204ENST00000422491 ZNF518AQ6AHZ1 1483 aa13.4□□□□□ -0.26
USP54-204ENST00000422491 HSP90AB1P08238 724 aaKnown RBP13.4□□□□□ -0.26
USP54-204ENST00000422491 TRIM27P14373 513 aa13.4□□□□□ -0.26
USP54-204ENST00000422491 NASPP49321 788 aaPredicted RBP13.4□□□□□ -0.26
USP54-204ENST00000422491 MYO3AQ8NEV4 1616 aa13.4□□□□□ -0.26
USP54-204ENST00000422491 NSD3Q9BZ95 1437 aa13.39□□□□□ -0.27
USP54-204ENST00000422491 CT47B1P0C2W7 299 aaPredicted RBP13.39□□□□□ -0.27
USP54-204ENST00000422491 TERF1P54274 439 aa13.39□□□□□ -0.27
USP54-204ENST00000422491 DDX19BQ9UMR2 479 aa13.39□□□□□ -0.27
USP54-204ENST00000422491 ABCA6Q8N139 1617 aa13.39□□□□□ -0.27
USP54-204ENST00000422491 ADGRB2O60241 1585 aa13.39□□□□□ -0.27
USP54-204ENST00000422491 RIPK4P57078 832 aa13.39□□□□□ -0.27
USP54-204ENST00000422491 CLEC17AQ6ZS10 378 aa13.39□□□□□ -0.27
USP54-204ENST00000422491 MORC1Q86VD1 984 aa13.39□□□□□ -0.27
USP54-204ENST00000422491 SBNO2Q9Y2G9 1366 aa13.39□□□□□ -0.27
USP54-204ENST00000422491 CALD1Q05682 793 aaKnown RBP13.38□□□□□ -0.27
USP54-204ENST00000422491 NEURL4Q96JN8 1562 aa13.38□□□□□ -0.27
USP54-204ENST00000422491 MAP3K4Q9Y6R4 1608 aa13.38□□□□□ -0.27
USP54-204ENST00000422491 CD2BP2O95400 341 aaKnown RBP13.38□□□□□ -0.27
USP54-204ENST00000422491 CFAP70Q5T0N1 1121 aa13.37□□□□□ -0.27
USP54-204ENST00000422491 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.37□□□□□ -0.27
USP54-204ENST00000422491 ARHGAP31Q2M1Z3 1444 aa13.37□□□□□ -0.27
USP54-204ENST00000422491 TNNT2P45379 298 aaPredicted RBP13.37□□□□□ -0.27
USP54-204ENST00000422491 NUCB1Q02818 461 aa13.37□□□□□ -0.27
USP54-204ENST00000422491 ADGRL1O94910 1474 aa13.37□□□□□ -0.27
USP54-204ENST00000422491 MYOM2P54296 1465 aa13.37□□□□□ -0.27
USP54-204ENST00000422491 KLHL40Q2TBA0 621 aa13.37□□□□□ -0.27
USP54-204ENST00000422491 ITPRIPQ8IWB1 547 aa13.37□□□□□ -0.27
USP54-204ENST00000422491 SMC4Q9NTJ3 1288 aa13.37□□□□□ -0.27
USP54-204ENST00000422491 ATF7IPQ6VMQ6 1270 aa13.36□□□□□ -0.27
USP54-204ENST00000422491 ZBTB40Q9NUA8 1239 aa13.36□□□□□ -0.27
USP54-204ENST00000422491 K7ELQ4 463 aaPredicted RBP13.36□□□□□ -0.27
USP54-204ENST00000422491 USP32Q8NFA0 1604 aa13.36□□□□□ -0.27
USP54-204ENST00000422491 CFAP74Q9C0B2 1584 aa13.35□□□□□ -0.27
USP54-204ENST00000422491 SSFA2P28290 1259 aa13.35□□□□□ -0.27
USP54-204ENST00000422491 MTHFSP49914 203 aa13.35□□□□□ -0.27
USP54-204ENST00000422491 SSH1Q8WYL5 1049 aa13.35□□□□□ -0.27
USP54-204ENST00000422491 TSR2Q969E8 191 aaKnown RBP13.35□□□□□ -0.27
USP54-204ENST00000422491 MSNP26038 577 aaKnown RBP13.35□□□□□ -0.27
USP54-204ENST00000422491 BMP2KLQ5H9B9 411 aa13.35□□□□□ -0.27
USP54-204ENST00000422491 PRDM4Q9UKN5 801 aa13.34□□□□□ -0.27
USP54-204ENST00000422491 NOS1P29475 1434 aa13.34□□□□□ -0.27
USP54-204ENST00000422491 TET3O43151 1660 aa13.34□□□□□ -0.27
USP54-204ENST00000422491 HS1BP3Q53T59 392 aa13.34□□□□□ -0.27
USP54-204ENST00000422491 TMEM57Q8N5G2 664 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms