RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 LTBP4Q8N2S1 1624 aa23.67■■□□□ 1.38
CCDC28B-202ENST00000421922 EVC2Q86UK5 1308 aa23.66■■□□□ 1.38
CCDC28B-202ENST00000421922 SIRT1Q96EB6 747 aa23.65■■□□□ 1.38
CCDC28B-202ENST00000421922 XRN1Q8IZH2 1706 aaKnown RBP23.64■■□□□ 1.38
CCDC28B-202ENST00000421922 AMOTL2Q9Y2J4 779 aa23.64■■□□□ 1.37
CCDC28B-202ENST00000421922 CHD2O14647 1828 aaKnown RBP23.63■■□□□ 1.37
CCDC28B-202ENST00000421922 MINK1Q8N4C8 1332 aaPredicted RBP23.63■■□□□ 1.37
CCDC28B-202ENST00000421922 PTCH1Q13635 1447 aa23.62■■□□□ 1.37
CCDC28B-202ENST00000421922 PTPRUQ92729 1446 aa23.62■■□□□ 1.37
CCDC28B-202ENST00000421922 WAPLQ7Z5K2 1190 aa23.61■■□□□ 1.37
CCDC28B-202ENST00000421922 TULP4Q9NRJ4 1543 aa23.61■■□□□ 1.37
CCDC28B-202ENST00000421922 ROBO2Q9HCK4 1378 aa23.6■■□□□ 1.37
CCDC28B-202ENST00000421922 PLEKHH1Q9ULM0 1364 aa23.6■■□□□ 1.37
CCDC28B-202ENST00000421922 SRPK2P78362 688 aaKnown RBP23.58■■□□□ 1.36
CCDC28B-202ENST00000421922 MYOM1P52179 1685 aa23.57■■□□□ 1.36
CCDC28B-202ENST00000421922 ANP32CO43423 234 aa23.57■■□□□ 1.36
CCDC28B-202ENST00000421922 IQSEC2Q5JU85 1478 aa23.57■■□□□ 1.36
CCDC28B-202ENST00000421922 PUS7Q96PZ0 661 aaKnown RBP23.55■■□□□ 1.36
CCDC28B-202ENST00000421922 ADGRB2O60241 1585 aa23.53■■□□□ 1.36
CCDC28B-202ENST00000421922 NWD1Q149M9 1564 aa23.53■■□□□ 1.36
CCDC28B-202ENST00000421922 KCNA6P17658 529 aa23.53■■□□□ 1.36
CCDC28B-202ENST00000421922 ATAD2Q6PL18 1390 aa23.53■■□□□ 1.36
CCDC28B-202ENST00000421922 TMC1Q8TDI8 760 aa23.51■■□□□ 1.35
CCDC28B-202ENST00000421922 CABP2Q9NPB3 220 aa23.51■■□□□ 1.35
CCDC28B-202ENST00000421922 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.51■■□□□ 1.35
CCDC28B-202ENST00000421922 CDK19Q9BWU1 502 aa23.5■■□□□ 1.35
CCDC28B-202ENST00000421922 NINLQ9Y2I6 1382 aa23.49■■□□□ 1.35
CCDC28B-202ENST00000421922 WASLO00401 505 aaPredicted RBP23.49■■□□□ 1.35
CCDC28B-202ENST00000421922 MIER1Q8N108 512 aa23.49■■□□□ 1.35
CCDC28B-202ENST00000421922 NKTRP30414 1462 aaKnown RBP23.48■■□□□ 1.35
CCDC28B-202ENST00000421922 PANK3Q9H999 370 aa23.48■■□□□ 1.35
CCDC28B-202ENST00000421922 C14orf37Q86TY3 774 aa23.43■■□□□ 1.34
CCDC28B-202ENST00000421922 NALCNQ8IZF0 1738 aa23.43■■□□□ 1.34
CCDC28B-202ENST00000421922 KNSTRNQ9Y448 316 aa23.42■■□□□ 1.34
CCDC28B-202ENST00000421922 ZNF335Q9H4Z2 1342 aaPredicted RBP23.42■■□□□ 1.34
CCDC28B-202ENST00000421922 PROSER2Q86WR7 435 aaPredicted RBP23.41■■□□□ 1.34
CCDC28B-202ENST00000421922 ITSN1Q15811 1721 aa23.4■■□□□ 1.34
CCDC28B-202ENST00000421922 CNGB1Q14028 1251 aaPredicted RBP23.4■■□□□ 1.34
CCDC28B-202ENST00000421922 SLC12A5Q9H2X9 1139 aa23.4■■□□□ 1.34
CCDC28B-202ENST00000421922 ADGRL3Q9HAR2 1447 aa23.39■■□□□ 1.34
CCDC28B-202ENST00000421922 TERF2IPQ9NYB0 399 aa23.39■■□□□ 1.33
CCDC28B-202ENST00000421922 ANKRD36BQ8N2N9 1353 aa23.39■■□□□ 1.33
CCDC28B-202ENST00000421922 CDC42BPGQ6DT37 1551 aa23.39■■□□□ 1.33
CCDC28B-202ENST00000421922 KTN1Q86UP2 1357 aaKnown RBP23.38■■□□□ 1.33
CCDC28B-202ENST00000421922 HDGFL2Q7Z4V5 671 aaPredicted RBP23.38■■□□□ 1.33
CCDC28B-202ENST00000421922 FMN2Q9NZ56 1722 aa23.38■■□□□ 1.33
CCDC28B-202ENST00000421922 PPIP5K1Q6PFW1 1433 aa23.38■■□□□ 1.33
CCDC28B-202ENST00000421922 UBAP1LF5GYI3 381 aa23.37■■□□□ 1.33
CCDC28B-202ENST00000421922 NUDT16Q96DE0 195 aaKnown RBP23.37■■□□□ 1.33
CCDC28B-202ENST00000421922 STRCP1A6NGW2 1772 aa23.37■■□□□ 1.33
CCDC28B-202ENST00000421922 ATP7BP35670 1465 aa23.36■■□□□ 1.33
CCDC28B-202ENST00000421922 TOPAZ1Q8N9V7 1692 aa23.35■■□□□ 1.33
CCDC28B-202ENST00000421922 NSD3Q9BZ95 1437 aa23.34■■□□□ 1.33
CCDC28B-202ENST00000421922 PRKRIP1Q9H875 184 aaPredicted RBP23.34■■□□□ 1.33
CCDC28B-202ENST00000421922 CCDC61Q9Y6R9 512 aa23.34■■□□□ 1.33
CCDC28B-202ENST00000421922 PER1O15534 1290 aaPredicted RBP23.33■■□□□ 1.33
CCDC28B-202ENST00000421922 CABP1Q9NZU7 370 aa23.33■■□□□ 1.33
CCDC28B-202ENST00000421922 ANKARQ7Z5J8 1434 aa23.33■■□□□ 1.32
CCDC28B-202ENST00000421922 RBM33Q96EV2 1170 aaKnown RBP23.33■■□□□ 1.32
CCDC28B-202ENST00000421922 USP32Q8NFA0 1604 aa23.32■■□□□ 1.32
CCDC28B-202ENST00000421922 NUTM2FA1L443 756 aa23.32■■□□□ 1.32
CCDC28B-202ENST00000421922 A0A1W2PP64 1363 aa23.31■■□□□ 1.32
CCDC28B-202ENST00000421922 RALBP1Q15311 655 aa23.31■■□□□ 1.32
CCDC28B-202ENST00000421922 CC2D1BQ5T0F9 858 aaKnown RBP23.31■■□□□ 1.32
CCDC28B-202ENST00000421922 NCOA3Q9Y6Q9 1424 aa23.3■■□□□ 1.32
CCDC28B-202ENST00000421922 CCER2I3L3R5 266 aa23.3■■□□□ 1.32
CCDC28B-202ENST00000421922 RGPD8O14715 1765 aaPredicted RBP23.3■■□□□ 1.32
CCDC28B-202ENST00000421922 AKAP12Q02952 1782 aa23.29■■□□□ 1.32
CCDC28B-202ENST00000421922 PRR36Q9H6K5 1346 aa23.29■■□□□ 1.32
CCDC28B-202ENST00000421922 TMEM94Q12767 1356 aa23.29■■□□□ 1.32
CCDC28B-202ENST00000421922 CGNL1Q0VF96 1302 aa23.28■■□□□ 1.32
CCDC28B-202ENST00000421922 CARD14Q9BXL6 1004 aa23.27■■□□□ 1.32
CCDC28B-202ENST00000421922 NPC1L1Q9UHC9 1359 aa23.27■■□□□ 1.32
CCDC28B-202ENST00000421922 CD163L1Q9NR16 1453 aa23.26■■□□□ 1.31
CCDC28B-202ENST00000421922 MON2Q7Z3U7 1717 aa23.26■■□□□ 1.31
CCDC28B-202ENST00000421922 KIF20BQ96Q89 1820 aa23.25■■□□□ 1.31
CCDC28B-202ENST00000421922 MSH6P52701 1360 aa23.25■■□□□ 1.31
CCDC28B-202ENST00000421922 AMER1Q5JTC6 1135 aaPredicted RBP23.25■■□□□ 1.31
CCDC28B-202ENST00000421922 C19orf44Q9H6X5 657 aa23.25■■□□□ 1.31
CCDC28B-202ENST00000421922 NSD2O96028 1365 aa23.24■■□□□ 1.31
CCDC28B-202ENST00000421922 PARD3Q8TEW0 1356 aa23.24■■□□□ 1.31
CCDC28B-202ENST00000421922 ATF3P18847 181 aa23.24■■□□□ 1.31
CCDC28B-202ENST00000421922 DCCP43146 1447 aa23.23■■□□□ 1.31
CCDC28B-202ENST00000421922 MYBBP1AQ9BQG0 1328 aaKnown RBP23.23■■□□□ 1.31
CCDC28B-202ENST00000421922 ZNF692Q9BU19 519 aaPredicted RBP23.23■■□□□ 1.31
CCDC28B-202ENST00000421922 PLEKHG3A1L390 1219 aa23.22■■□□□ 1.31
CCDC28B-202ENST00000421922 NGDNQ8NEJ9 315 aaKnown RBP23.22■■□□□ 1.31
CCDC28B-202ENST00000421922 CPSF1Q10570 1443 aaKnown RBP23.22■■□□□ 1.31
CCDC28B-202ENST00000421922 EDC4Q6P2E9 1401 aaKnown RBP23.22■■□□□ 1.31
CCDC28B-202ENST00000421922 LRRC7Q96NW7 1537 aa23.21■■□□□ 1.31
CCDC28B-202ENST00000421922 XIRP1Q702N8 1843 aaKnown RBP23.21■■□□□ 1.31
CCDC28B-202ENST00000421922 ACEP12821 1306 aa23.2■■□□□ 1.31
CCDC28B-202ENST00000421922 ANKRD26Q9UPS8 1709 aa23.2■■□□□ 1.3
CCDC28B-202ENST00000421922 MED1Q15648 1581 aaPredicted RBP23.19■■□□□ 1.3
CCDC28B-202ENST00000421922 HSPA1LP34931 641 aa23.19■■□□□ 1.3
CCDC28B-202ENST00000421922 PMFBP1Q8TBY8 1022 aa23.18■■□□□ 1.3
CCDC28B-202ENST00000421922 CADPS2Q86UW7 1296 aa23.17■■□□□ 1.3
CCDC28B-202ENST00000421922 MORC1Q86VD1 984 aa23.17■■□□□ 1.3
CCDC28B-202ENST00000421922 MRS2Q9HD23 443 aa23.17■■□□□ 1.3
CCDC28B-202ENST00000421922 KIF1AQ12756 1690 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms