RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 CC2D1BQ5T0F9 858 aaKnown RBP28.55■■■□□ 2.16
GPC1-202ENST00000420138 CARD14Q9BXL6 1004 aa28.55■■■□□ 2.16
GPC1-202ENST00000420138 POGKQ9P215 609 aa28.55■■■□□ 2.16
GPC1-202ENST00000420138 KNSTRNQ9Y448 316 aa28.55■■■□□ 2.16
GPC1-202ENST00000420138 TECPR2O15040 1411 aa28.54■■■□□ 2.16
GPC1-202ENST00000420138 PLEKHH1Q9ULM0 1364 aa28.54■■■□□ 2.16
GPC1-202ENST00000420138 MINK1Q8N4C8 1332 aaPredicted RBP28.52■■■□□ 2.16
GPC1-202ENST00000420138 WAPLQ7Z5K2 1190 aa28.52■■■□□ 2.16
GPC1-202ENST00000420138 SLC12A5Q9H2X9 1139 aa28.52■■■□□ 2.16
GPC1-202ENST00000420138 NPC1L1Q9UHC9 1359 aa28.52■■■□□ 2.16
GPC1-202ENST00000420138 CABP2Q9NPB3 220 aa28.51■■■□□ 2.15
GPC1-202ENST00000420138 BRD4O60885 1362 aaPredicted RBP28.51■■■□□ 2.15
GPC1-202ENST00000420138 KNDC1Q76NI1 1749 aa28.5■■■□□ 2.15
GPC1-202ENST00000420138 ANKLE2Q86XL3 938 aa28.5■■■□□ 2.15
GPC1-202ENST00000420138 SIRT1Q96EB6 747 aa28.5■■■□□ 2.15
GPC1-202ENST00000420138 DIP2AQ14689 1571 aa28.49■■■□□ 2.15
GPC1-202ENST00000420138 FAM9BQ8IZU0 186 aa28.48■■■□□ 2.15
GPC1-202ENST00000420138 FAM135BQ49AJ0 1406 aa28.47■■■□□ 2.15
GPC1-202ENST00000420138 NLRP13Q86W25 1043 aa28.47■■■□□ 2.15
GPC1-202ENST00000420138 TMC1Q8TDI8 760 aa28.47■■■□□ 2.15
GPC1-202ENST00000420138 CPS1P31327 1500 aa28.47■■■□□ 2.15
GPC1-202ENST00000420138 PNISRQ8TF01 805 aaKnown RBP28.46■■■□□ 2.15
GPC1-202ENST00000420138 SLC26A8Q96RN1 970 aa28.46■■■□□ 2.15
GPC1-202ENST00000420138 PTPRUQ92729 1446 aa28.43■■■□□ 2.14
GPC1-202ENST00000420138 SRPK2P78362 688 aaKnown RBP28.43■■■□□ 2.14
GPC1-202ENST00000420138 TBX22Q9Y458 520 aa28.43■■■□□ 2.14
GPC1-202ENST00000420138 CDK19Q9BWU1 502 aa28.42■■■□□ 2.14
GPC1-202ENST00000420138 ATAD2Q6PL18 1390 aa28.41■■■□□ 2.14
GPC1-202ENST00000420138 ROBO2Q9HCK4 1378 aa28.41■■■□□ 2.14
GPC1-202ENST00000420138 ANKRD36BQ8N2N9 1353 aa28.41■■■□□ 2.14
GPC1-202ENST00000420138 NINLQ9Y2I6 1382 aa28.41■■■□□ 2.14
GPC1-202ENST00000420138 HNRNPUQ00839 825 aaKnown RBP eCLIP28.41■■■□□ 2.14
GPC1-202ENST00000420138 NSD3Q9BZ95 1437 aa28.4■■■□□ 2.14
GPC1-202ENST00000420138 PPP2R1AP30153 589 aa28.36■■■□□ 2.13
GPC1-202ENST00000420138 NPHP4O75161 1426 aaPredicted RBP28.35■■■□□ 2.13
GPC1-202ENST00000420138 CD163L1Q9NR16 1453 aa28.35■■■□□ 2.13
GPC1-202ENST00000420138 USP32Q8NFA0 1604 aa28.33■■■□□ 2.13
GPC1-202ENST00000420138 WASLO00401 505 aaPredicted RBP28.33■■■□□ 2.13
GPC1-202ENST00000420138 A0A1W2PP64 1363 aa28.33■■■□□ 2.13
GPC1-202ENST00000420138 XRN1Q8IZH2 1706 aaKnown RBP28.32■■■□□ 2.12
GPC1-202ENST00000420138 NCKAP5LQ9HCH0 1330 aa28.32■■■□□ 2.12
GPC1-202ENST00000420138 CHD2O14647 1828 aaKnown RBP28.32■■■□□ 2.12
GPC1-202ENST00000420138 LMTK3Q96Q04 1460 aa28.32■■■□□ 2.12
GPC1-202ENST00000420138 PIK3R4Q99570 1358 aa28.31■■■□□ 2.12
GPC1-202ENST00000420138 AMOTL2Q9Y2J4 779 aa28.31■■■□□ 2.12
GPC1-202ENST00000420138 PTCH1Q13635 1447 aa28.29■■■□□ 2.12
GPC1-202ENST00000420138 CABP1Q9NZU7 370 aa28.28■■■□□ 2.12
GPC1-202ENST00000420138 HSPA2P54652 639 aa28.27■■■□□ 2.12
GPC1-202ENST00000420138 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.27■■■□□ 2.12
GPC1-202ENST00000420138 CGNL1Q0VF96 1302 aa28.26■■■□□ 2.11
GPC1-202ENST00000420138 ADGRB2O60241 1585 aa28.26■■■□□ 2.11
GPC1-202ENST00000420138 TERF2IPQ9NYB0 399 aa28.25■■■□□ 2.11
GPC1-202ENST00000420138 ZBED9Q6R2W3 1325 aa28.24■■■□□ 2.11
GPC1-202ENST00000420138 ATP7BP35670 1465 aa28.21■■■□□ 2.11
GPC1-202ENST00000420138 NSD2O96028 1365 aa28.21■■■□□ 2.11
GPC1-202ENST00000420138 NUDT16Q96DE0 195 aaKnown RBP28.2■■■□□ 2.11
GPC1-202ENST00000420138 PRR36Q9H6K5 1346 aa28.2■■■□□ 2.11
GPC1-202ENST00000420138 MORC1Q86VD1 984 aa28.19■■■□□ 2.1
GPC1-202ENST00000420138 STRCQ7RTU9 1775 aa28.19■■■□□ 2.1
GPC1-202ENST00000420138 PPIP5K1Q6PFW1 1433 aa28.19■■■□□ 2.1
GPC1-202ENST00000420138 KCNA6P17658 529 aa28.18■■■□□ 2.1
GPC1-202ENST00000420138 HDGFL2Q7Z4V5 671 aaPredicted RBP28.18■■■□□ 2.1
GPC1-202ENST00000420138 INSRP06213 1382 aa28.18■■■□□ 2.1
GPC1-202ENST00000420138 CPSF1Q10570 1443 aaKnown RBP28.18■■■□□ 2.1
GPC1-202ENST00000420138 CCDC61Q9Y6R9 512 aa28.17■■■□□ 2.1
GPC1-202ENST00000420138 FYB1O15117 783 aa28.14■■■□□ 2.1
GPC1-202ENST00000420138 NWD1Q149M9 1564 aa28.14■■■□□ 2.09
GPC1-202ENST00000420138 BLMP54132 1417 aaPredicted RBP28.13■■■□□ 2.09
GPC1-202ENST00000420138 CDC42BPGQ6DT37 1551 aa28.11■■■□□ 2.09
GPC1-202ENST00000420138 GGNBP2Q9H3C7 697 aa28.11■■■□□ 2.09
GPC1-202ENST00000420138 POLR3AO14802 1390 aaPredicted RBP28.1■■■□□ 2.09
GPC1-202ENST00000420138 ADAMTS8Q9UP79 889 aa28.1■■■□□ 2.09
GPC1-202ENST00000420138 TNNT2P45379 298 aaPredicted RBP28.09■■■□□ 2.09
GPC1-202ENST00000420138 NALCNQ8IZF0 1738 aa28.08■■■□□ 2.08
GPC1-202ENST00000420138 TOPAZ1Q8N9V7 1692 aa28.07■■■□□ 2.08
GPC1-202ENST00000420138 SENP3-EIF4A1A0A087X0R7 540 aa28.06■■■□□ 2.08
GPC1-202ENST00000420138 EDC4Q6P2E9 1401 aaKnown RBP28.06■■■□□ 2.08
GPC1-202ENST00000420138 PLEKHG3A1L390 1219 aa28.04■■■□□ 2.08
GPC1-202ENST00000420138 STRCP1A6NGW2 1772 aa28.04■■■□□ 2.08
GPC1-202ENST00000420138 NUTM2FA1L443 756 aa28.03■■■□□ 2.08
GPC1-202ENST00000420138 ANKRD26Q9UPS8 1709 aa28.03■■■□□ 2.08
GPC1-202ENST00000420138 NKTRP30414 1462 aaKnown RBP28.03■■■□□ 2.08
GPC1-202ENST00000420138 MTHFSP49914 203 aa28.02■■■□□ 2.08
GPC1-202ENST00000420138 WDR43Q15061 677 aaKnown RBP eCLIP28.02■■■□□ 2.08
GPC1-202ENST00000420138 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.02■■■□□ 2.08
GPC1-202ENST00000420138 MON2Q7Z3U7 1717 aa28.01■■■□□ 2.08
GPC1-202ENST00000420138 ITSN1Q15811 1721 aa28■■■□□ 2.07
GPC1-202ENST00000420138 RGPD8O14715 1765 aaPredicted RBP28■■■□□ 2.07
GPC1-202ENST00000420138 ZNF692Q9BU19 519 aaPredicted RBP28■■■□□ 2.07
GPC1-202ENST00000420138 FMN2Q9NZ56 1722 aa28■■■□□ 2.07
GPC1-202ENST00000420138 AKAP12Q02952 1782 aa28■■■□□ 2.07
GPC1-202ENST00000420138 KIF20BQ96Q89 1820 aa27.99■■■□□ 2.07
GPC1-202ENST00000420138 RBM33Q96EV2 1170 aaKnown RBP27.98■■■□□ 2.07
GPC1-202ENST00000420138 ACEP12821 1306 aa27.98■■■□□ 2.07
GPC1-202ENST00000420138 ANKARQ7Z5J8 1434 aa27.96■■■□□ 2.07
GPC1-202ENST00000420138 ADGRL3Q9HAR2 1447 aa27.96■■■□□ 2.07
GPC1-202ENST00000420138 SUPT16HQ9Y5B9 1047 aaKnown RBP27.96■■■□□ 2.07
GPC1-202ENST00000420138 SHPRHQ149N8 1683 aa27.96■■■□□ 2.07
GPC1-202ENST00000420138 NME9Q86XW9 330 aa27.95■■■□□ 2.07
GPC1-202ENST00000420138 PROSER2Q86WR7 435 aaPredicted RBP27.95■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms