RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ITSN1Q15811 1721 aa8.33□□□□□ -1.08
HMGB3-202ENST00000419110 FBXO31Q5XUX0 539 aaPredicted RBP8.33□□□□□ -1.08
HMGB3-202ENST00000419110 XRN1Q8IZH2 1706 aaKnown RBP8.33□□□□□ -1.08
HMGB3-202ENST00000419110 PTPRMP28827 1452 aa8.32□□□□□ -1.08
HMGB3-202ENST00000419110 ADGRF5Q8IZF2 1346 aa8.32□□□□□ -1.08
HMGB3-202ENST00000419110 VGFO15240 615 aaPredicted RBP8.32□□□□□ -1.08
HMGB3-202ENST00000419110 CREBZFQ9NS37 354 aa8.32□□□□□ -1.08
HMGB3-202ENST00000419110 TMEM2Q9UHN6 1383 aa8.32□□□□□ -1.08
HMGB3-202ENST00000419110 SBNO2Q9Y2G9 1366 aa8.32□□□□□ -1.08
HMGB3-202ENST00000419110 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.31□□□□□ -1.08
HMGB3-202ENST00000419110 ADGRB2O60241 1585 aa8.31□□□□□ -1.08
HMGB3-202ENST00000419110 USP32Q8NFA0 1604 aa8.3□□□□□ -1.08
HMGB3-202ENST00000419110 HIRIP3Q9BW71 556 aaPredicted RBP8.3□□□□□ -1.08
HMGB3-202ENST00000419110 PLEKHG1Q9ULL1 1385 aa8.3□□□□□ -1.08
HMGB3-202ENST00000419110 KIF7Q2M1P5 1343 aa8.29□□□□□ -1.08
HMGB3-202ENST00000419110 WASHC2AQ641Q2 1341 aa8.29□□□□□ -1.08
HMGB3-202ENST00000419110 YTHDC2Q9H6S0 1430 aaKnown RBP8.29□□□□□ -1.08
HMGB3-202ENST00000419110 TULP4Q9NRJ4 1543 aa8.29□□□□□ -1.08
HMGB3-202ENST00000419110 ANKRD26Q9UPS8 1709 aa8.29□□□□□ -1.08
HMGB3-202ENST00000419110 KIF20BQ96Q89 1820 aa8.29□□□□□ -1.08
HMGB3-202ENST00000419110 NBPF1Q3BBV0 1214 aa8.29□□□□□ -1.08
HMGB3-202ENST00000419110 TOPAZ1Q8N9V7 1692 aa8.28□□□□□ -1.08
HMGB3-202ENST00000419110 HDGFP51858 240 aaKnown RBP8.28□□□□□ -1.08
HMGB3-202ENST00000419110 CHD2O14647 1828 aaKnown RBP8.28□□□□□ -1.08
HMGB3-202ENST00000419110 TECPR2O15040 1411 aa8.28□□□□□ -1.08
HMGB3-202ENST00000419110 NWD1Q149M9 1564 aa8.27□□□□□ -1.09
HMGB3-202ENST00000419110 DISP3Q9P2K9 1392 aa8.27□□□□□ -1.09
HMGB3-202ENST00000419110 ST20-MTHFSA0A0A6YYL1 179 aa8.27□□□□□ -1.09
HMGB3-202ENST00000419110 CFAP70Q5T0N1 1121 aa8.27□□□□□ -1.09
HMGB3-202ENST00000419110 C14orf93Q9H972 538 aaKnown RBP8.27□□□□□ -1.09
HMGB3-202ENST00000419110 CENPJQ9HC77 1338 aaPredicted RBP8.27□□□□□ -1.09
HMGB3-202ENST00000419110 NALCNQ8IZF0 1738 aa8.26□□□□□ -1.09
HMGB3-202ENST00000419110 AKAP12Q02952 1782 aa8.26□□□□□ -1.09
HMGB3-202ENST00000419110 SLC24A1O60721 1099 aa8.26□□□□□ -1.09
HMGB3-202ENST00000419110 CLCN6P51797 869 aa8.26□□□□□ -1.09
HMGB3-202ENST00000419110 TMF1P82094 1093 aa8.26□□□□□ -1.09
HMGB3-202ENST00000419110 CDCA8Q53HL2 280 aa8.26□□□□□ -1.09
HMGB3-202ENST00000419110 PTCH1Q13635 1447 aa8.26□□□□□ -1.09
HMGB3-202ENST00000419110 MON2Q7Z3U7 1717 aa8.26□□□□□ -1.09
HMGB3-202ENST00000419110 LRPPRCP42704 1394 aaKnown RBP8.25□□□□□ -1.09
HMGB3-202ENST00000419110 CEBPAP49715 358 aaPredicted RBP8.25□□□□□ -1.09
HMGB3-202ENST00000419110 DDX10Q13206 875 aaKnown RBP8.25□□□□□ -1.09
HMGB3-202ENST00000419110 NUTM2DQ5VT03 806 aaPredicted RBP8.25□□□□□ -1.09
HMGB3-202ENST00000419110 POLR3GLQ9BT43 218 aa8.25□□□□□ -1.09
HMGB3-202ENST00000419110 EID1Q9Y6B2 187 aa8.25□□□□□ -1.09
HMGB3-202ENST00000419110 ADAMTS13Q76LX8 1427 aa8.25□□□□□ -1.09
HMGB3-202ENST00000419110 FMN2Q9NZ56 1722 aa8.24□□□□□ -1.09
HMGB3-202ENST00000419110 MED14O60244 1454 aa8.24□□□□□ -1.09
HMGB3-202ENST00000419110 CDC42BPGQ6DT37 1551 aa8.23□□□□□ -1.09
HMGB3-202ENST00000419110 FAM135BQ49AJ0 1406 aa8.23□□□□□ -1.09
HMGB3-202ENST00000419110 ANP32CO43423 234 aa8.23□□□□□ -1.09
HMGB3-202ENST00000419110 THEMISQ8N1K5 641 aaPredicted RBP8.23□□□□□ -1.09
HMGB3-202ENST00000419110 TESK2Q96S53 571 aa8.23□□□□□ -1.09
HMGB3-202ENST00000419110 ZRANB1Q9UGI0 708 aa8.23□□□□□ -1.09
HMGB3-202ENST00000419110 NINLQ9Y2I6 1382 aa8.22□□□□□ -1.09
HMGB3-202ENST00000419110 PIK3R4Q99570 1358 aa8.22□□□□□ -1.09
HMGB3-202ENST00000419110 NPHP4O75161 1426 aaPredicted RBP8.21□□□□□ -1.09
HMGB3-202ENST00000419110 NKTRP30414 1462 aaKnown RBP8.21□□□□□ -1.09
HMGB3-202ENST00000419110 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.21□□□□□ -1.09
HMGB3-202ENST00000419110 PROM2Q8N271 834 aa8.21□□□□□ -1.1
HMGB3-202ENST00000419110 BCANQ96GW7 911 aa8.21□□□□□ -1.1
HMGB3-202ENST00000419110 TRAK1Q9UPV9 953 aa8.21□□□□□ -1.1
HMGB3-202ENST00000419110 NRKQ7Z2Y5 1582 aa8.21□□□□□ -1.1
HMGB3-202ENST00000419110 ATAD2Q6PL18 1390 aa8.21□□□□□ -1.1
HMGB3-202ENST00000419110 KTN1Q86UP2 1357 aaKnown RBP8.21□□□□□ -1.1
HMGB3-202ENST00000419110 ABCC11Q96J66 1382 aa8.21□□□□□ -1.1
HMGB3-202ENST00000419110 TMEM132EQ6IEE7 984 aa8.2□□□□□ -1.1
HMGB3-202ENST00000419110 ZNF579Q8NAF0 562 aaKnown RBP8.2□□□□□ -1.1
HMGB3-202ENST00000419110 EVC2Q86UK5 1308 aa8.2□□□□□ -1.1
HMGB3-202ENST00000419110 METP08581 1390 aa8.2□□□□□ -1.1
HMGB3-202ENST00000419110 ATP7BP35670 1465 aa8.19□□□□□ -1.1
HMGB3-202ENST00000419110 LMTK3Q96Q04 1460 aa8.19□□□□□ -1.1
HMGB3-202ENST00000419110 C11orf95C9JLR9 678 aaPredicted RBP8.19□□□□□ -1.1
HMGB3-202ENST00000419110 TXNDC2Q86VQ3 553 aa8.19□□□□□ -1.1
HMGB3-202ENST00000419110 POGKQ9P215 609 aa8.19□□□□□ -1.1
HMGB3-202ENST00000419110 RGPD8O14715 1765 aaPredicted RBP8.19□□□□□ -1.1
HMGB3-202ENST00000419110 STRCQ7RTU9 1775 aa8.19□□□□□ -1.1
HMGB3-202ENST00000419110 KIF1AQ12756 1690 aa8.18□□□□□ -1.1
HMGB3-202ENST00000419110 PAK3O75914 559 aaPredicted RBP8.18□□□□□ -1.1
HMGB3-202ENST00000419110 MNX1P50219 401 aaPredicted RBP8.18□□□□□ -1.1
HMGB3-202ENST00000419110 MIER1Q8N108 512 aa8.18□□□□□ -1.1
HMGB3-202ENST00000419110 STK26Q9P289 416 aa8.18□□□□□ -1.1
HMGB3-202ENST00000419110 POTEIP0CG38 1075 aa8.17□□□□□ -1.1
HMGB3-202ENST00000419110 LTKP29376 864 aa8.17□□□□□ -1.1
HMGB3-202ENST00000419110 ANKLE2Q86XL3 938 aa8.17□□□□□ -1.1
HMGB3-202ENST00000419110 PRAM1Q96QH2 718 aa8.17□□□□□ -1.1
HMGB3-202ENST00000419110 STRCP1A6NGW2 1772 aa8.17□□□□□ -1.1
HMGB3-202ENST00000419110 ANKRD36BQ8N2N9 1353 aa8.16□□□□□ -1.1
HMGB3-202ENST00000419110 PTPRUQ92729 1446 aa8.16□□□□□ -1.1
HMGB3-202ENST00000419110 ROBO2Q9HCK4 1378 aa8.16□□□□□ -1.1
HMGB3-202ENST00000419110 USP54Q70EL1 1684 aa8.15□□□□□ -1.1
HMGB3-202ENST00000419110 NSD3Q9BZ95 1437 aa8.15□□□□□ -1.1
HMGB3-202ENST00000419110 NSD2O96028 1365 aa8.15□□□□□ -1.1
HMGB3-202ENST00000419110 PARD3Q8TEW0 1356 aa8.15□□□□□ -1.1
HMGB3-202ENST00000419110 PLEKHH1Q9ULM0 1364 aa8.15□□□□□ -1.1
HMGB3-202ENST00000419110 MINK1Q8N4C8 1332 aaPredicted RBP8.15□□□□□ -1.1
HMGB3-202ENST00000419110 CCER2I3L3R5 266 aa8.15□□□□□ -1.1
HMGB3-202ENST00000419110 SAFB2Q14151 953 aaKnown RBP eCLIP8.15□□□□□ -1.1
HMGB3-202ENST00000419110 LHX8Q68G74 356 aa8.15□□□□□ -1.1
HMGB3-202ENST00000419110 DCBLD2Q96PD2 775 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms