RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 ANAPC4Q9UJX5 808 aa5.48□□□□□ -1.53
PTPN13-202ENST00000411767 ZFYP08048 801 aaPredicted RBP5.47□□□□□ -1.53
PTPN13-202ENST00000411767 MAP9Q49MG5 647 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 PPP4R4Q6NUP7 873 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 CPSF2Q9P2I0 782 aaKnown RBP5.47□□□□□ -1.53
PTPN13-202ENST00000411767 SYNE3Q6ZMZ3 975 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 CEP120Q8N960 986 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 SREK1Q8WXA9 508 aaKnown RBP5.47□□□□□ -1.53
PTPN13-202ENST00000411767 GBP3Q9H0R5 595 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 TICAM2Q86XR7 235 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 SSX2IPQ9Y2D8 614 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 CCDC144CPQ8IYA2 1237 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 MPHOSPH6Q99547 160 aaKnown RBP5.47□□□□□ -1.53
PTPN13-202ENST00000411767 FILIP1LQ4L180 1135 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 CPLX2Q6PUV4 134 aaKnown RBP5.47□□□□□ -1.53
PTPN13-202ENST00000411767 NOL10Q9BSC4 688 aaKnown RBP5.47□□□□□ -1.53
PTPN13-202ENST00000411767 H3BQV1 296 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 U2SURPO15042 1029 aaKnown RBP5.47□□□□□ -1.53
PTPN13-202ENST00000411767 MGEA5O60502 916 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 PIP4K2AP48426 406 aaPredicted RBP5.47□□□□□ -1.53
PTPN13-202ENST00000411767 TRIM29Q14134 588 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 GORABQ5T7V8 394 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 IFFO2Q5TF58 517 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 RSPH3Q86UC2 560 aa5.47□□□□□ -1.53
PTPN13-202ENST00000411767 APLFQ8IW19 511 aaPredicted RBP5.47□□□□□ -1.53
PTPN13-202ENST00000411767 KIF5AQ12840 1032 aa5.46□□□□□ -1.53
PTPN13-202ENST00000411767 C10orf67Q8IYJ2 551 aa5.46□□□□□ -1.53
PTPN13-202ENST00000411767 ZSCAN31Q96LW9 406 aaPredicted RBP5.46□□□□□ -1.53
PTPN13-202ENST00000411767 MRE11P49959 708 aa5.46□□□□□ -1.53
PTPN13-202ENST00000411767 LUZP1Q86V48 1076 aa5.46□□□□□ -1.53
PTPN13-202ENST00000411767 TACC1O75410 805 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 LMOD3Q0VAK6 560 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 LIMCH1Q9UPQ0 1083 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 FKBP15Q5T1M5 1219 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 TMCO3Q6UWJ1 677 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 BICD1Q96G01 975 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.46□□□□□ -1.54
PTPN13-202ENST00000411767 RUFY2Q8WXA3 655 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 CCER2I3L3R5 266 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 CCDC158Q5M9N0 1113 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 LRRCC1Q9C099 1032 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 NAT10Q9H0A0 1025 aaKnown RBP5.46□□□□□ -1.54
PTPN13-202ENST00000411767 TAOK3Q9H2K8 898 aa5.46□□□□□ -1.54
PTPN13-202ENST00000411767 NAA16Q6N069 864 aaPredicted RBP5.45□□□□□ -1.54
PTPN13-202ENST00000411767 HOOK3Q86VS8 718 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 WHAMMQ8TF30 809 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 CAPZA3Q96KX2 299 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 VCXQ9H320 206 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 CETN2P41208 172 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 CFAP58Q5T655 872 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 CCDC89Q8N998 374 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 RABGAP1Q9Y3P9 1069 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 CCDC73Q6ZRK6 1079 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 RPGRIP1Q96KN7 1286 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 RAI14Q9P0K7 980 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 SALL2Q9Y467 1007 aaPredicted RBP5.45□□□□□ -1.54
PTPN13-202ENST00000411767 MAP4K4O95819 1239 aaPredicted RBP5.45□□□□□ -1.54
PTPN13-202ENST00000411767 PUS7Q96PZ0 661 aaKnown RBP5.45□□□□□ -1.54
PTPN13-202ENST00000411767 ANAPC15P60006 121 aa5.45□□□□□ -1.54
PTPN13-202ENST00000411767 TTC36A6NLP5 189 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 ST18O60284 1047 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 SETDB1Q15047 1291 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 TMEM132AQ24JP5 1023 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 LRRC45Q96CN5 670 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 SSBP05455 408 aaKnown RBP eCLIP5.44□□□□□ -1.54
PTPN13-202ENST00000411767 JAKMIP3Q5VZ66 844 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 TTLL5Q6EMB2 1281 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 DDX12PQ92771 950 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 TSNARE1Q96NA8 513 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 RAB3IPQ96QF0 476 aaPredicted RBP5.44□□□□□ -1.54
PTPN13-202ENST00000411767 TRIM5Q9C035 493 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 GOLGA1Q92805 767 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 SMARCC1Q92922 1105 aaPredicted RBP5.44□□□□□ -1.54
PTPN13-202ENST00000411767 ATP6V1E2Q96A05 226 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 TRIM60Q495X7 471 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 TMF1P82094 1093 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 CAMK4Q16566 473 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 CCDC148Q8NFR7 591 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 FBXW7Q969H0 707 aa5.44□□□□□ -1.54
PTPN13-202ENST00000411767 HIRIP3Q9BW71 556 aaPredicted RBP5.44□□□□□ -1.54
PTPN13-202ENST00000411767 FAM184AQ8NB25 1140 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 TRIM55Q9BYV6 548 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 SMC4Q9NTJ3 1288 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 ALS2CR12Q96Q35 445 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 MVPQ14764 893 aaKnown RBP5.43□□□□□ -1.54
PTPN13-202ENST00000411767 CEP83Q9Y592 693 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 PRC1O43663 620 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 MCM3P25205 808 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 TPD52P55327 224 aaPredicted RBP5.43□□□□□ -1.54
PTPN13-202ENST00000411767 OLFM4Q6UX06 510 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 CTAGE6Q86UF2 777 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 EIF2AQ9BY44 585 aaKnown RBP5.43□□□□□ -1.54
PTPN13-202ENST00000411767 POTEJP0CG39 1038 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 MATR3P43243 847 aaKnown RBP eCLIP5.43□□□□□ -1.54
PTPN13-202ENST00000411767 SATB1Q01826 763 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 KIF4BQ2VIQ3 1234 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 SPECC1LQ69YQ0 1117 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 ATP2A3Q93084 1043 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 COMMD10Q9Y6G5 202 aa5.43□□□□□ -1.54
PTPN13-202ENST00000411767 PPP1R15AO75807 674 aaPredicted RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 127.8 ms