RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 NLRP6P59044 892 aa10.22□□□□□ -0.77
SCN9A-203ENST00000409672 TMEM132EQ6IEE7 984 aa10.22□□□□□ -0.77
SCN9A-203ENST00000409672 MAP4K4O95819 1239 aaPredicted RBP10.21□□□□□ -0.77
SCN9A-203ENST00000409672 IPO7O95373 1038 aaKnown RBP10.21□□□□□ -0.77
SCN9A-203ENST00000409672 RALYLQ86SE5 291 aaKnown RBP10.21□□□□□ -0.77
SCN9A-203ENST00000409672 CEBPZQ03701 1054 aaKnown RBP10.21□□□□□ -0.77
SCN9A-203ENST00000409672 TMEM87AQ8NBN3 555 aa10.21□□□□□ -0.77
SCN9A-203ENST00000409672 JPH4Q96JJ6 628 aa10.21□□□□□ -0.77
SCN9A-203ENST00000409672 SIL1Q9H173 461 aa10.21□□□□□ -0.78
SCN9A-203ENST00000409672 OFD1O75665 1012 aa10.21□□□□□ -0.78
SCN9A-203ENST00000409672 SETD5Q9C0A6 1442 aa10.21□□□□□ -0.78
SCN9A-203ENST00000409672 PDE3BQ13370 1112 aa10.21□□□□□ -0.78
SCN9A-203ENST00000409672 KRT18P05783 430 aaKnown RBP10.2□□□□□ -0.78
SCN9A-203ENST00000409672 ST20-MTHFSA0A0A6YYL1 179 aa10.2□□□□□ -0.78
SCN9A-203ENST00000409672 ANKRD20A12PQ8NF67 263 aa10.2□□□□□ -0.78
SCN9A-203ENST00000409672 CDK5RAP3Q96JB5 506 aa10.2□□□□□ -0.78
SCN9A-203ENST00000409672 TRMT1LQ7Z2T5 733 aaKnown RBP10.2□□□□□ -0.78
SCN9A-203ENST00000409672 DDX49Q9Y6V7 483 aaKnown RBP10.2□□□□□ -0.78
SCN9A-203ENST00000409672 CGNL1Q0VF96 1302 aa10.2□□□□□ -0.78
SCN9A-203ENST00000409672 ANKRD62A6NC57 917 aa10.19□□□□□ -0.78
SCN9A-203ENST00000409672 RALBP1Q15311 655 aa10.19□□□□□ -0.78
SCN9A-203ENST00000409672 ZKSCAN1P17029 563 aaPredicted RBP10.19□□□□□ -0.78
SCN9A-203ENST00000409672 PSMD1Q99460 953 aa10.19□□□□□ -0.78
SCN9A-203ENST00000409672 SETQ01105 290 aaPredicted RBP10.19□□□□□ -0.78
SCN9A-203ENST00000409672 SAFBQ15424 915 aaKnown RBP eCLIP10.19□□□□□ -0.783e-6■■□□□ 14.5
SCN9A-203ENST00000409672 GGNBP2Q9H3C7 697 aa10.18□□□□□ -0.78
SCN9A-203ENST00000409672 DIAPH1O60610 1272 aaKnown RBP10.18□□□□□ -0.78
SCN9A-203ENST00000409672 RUFY2Q8WXA3 655 aa10.18□□□□□ -0.78
SCN9A-203ENST00000409672 L3MBTL2Q969R5 705 aa10.18□□□□□ -0.78
SCN9A-203ENST00000409672 PODXL2Q9NZ53 605 aa10.18□□□□□ -0.78
SCN9A-203ENST00000409672 RBM19Q9Y4C8 960 aaKnown RBP10.18□□□□□ -0.78
SCN9A-203ENST00000409672 TTC39AQ5SRH9 613 aa10.18□□□□□ -0.78
SCN9A-203ENST00000409672 VGFO15240 615 aaPredicted RBP10.18□□□□□ -0.78
SCN9A-203ENST00000409672 CRBNQ96SW2 442 aa10.17□□□□□ -0.78
SCN9A-203ENST00000409672 E9PSI1 815 aa10.17□□□□□ -0.78
SCN9A-203ENST00000409672 APAF1O14727 1248 aa10.17□□□□□ -0.78
SCN9A-203ENST00000409672 USP5P45974 858 aa10.17□□□□□ -0.78
SCN9A-203ENST00000409672 CABP4P57796 275 aa10.17□□□□□ -0.78
SCN9A-203ENST00000409672 NEFHP12036 1026 aa10.17□□□□□ -0.78
SCN9A-203ENST00000409672 SLC4A8Q2Y0W8 1093 aa10.17□□□□□ -0.78
SCN9A-203ENST00000409672 BRMS1Q9HCU9 246 aa10.17□□□□□ -0.78
SCN9A-203ENST00000409672 HOOK1Q9UJC3 728 aaKnown RBP10.16□□□□□ -0.78
SCN9A-203ENST00000409672 SYCP1Q15431 976 aa10.16□□□□□ -0.78
SCN9A-203ENST00000409672 PDCL3Q9H2J4 239 aa10.16□□□□□ -0.78
SCN9A-203ENST00000409672 CAGE1Q8TC20 777 aa10.15□□□□□ -0.78
SCN9A-203ENST00000409672 STK3Q13188 491 aa10.15□□□□□ -0.78
SCN9A-203ENST00000409672 LNPKQ9C0E8 428 aa10.15□□□□□ -0.78
SCN9A-203ENST00000409672 SEPT11Q9NVA2 429 aaKnown RBP10.15□□□□□ -0.78
SCN9A-203ENST00000409672 FHOD3Q2V2M9 1422 aa10.15□□□□□ -0.78
SCN9A-203ENST00000409672 FMNL2Q96PY5 1086 aa10.15□□□□□ -0.78
SCN9A-203ENST00000409672 RUFY1Q96T51 708 aa10.15□□□□□ -0.78
SCN9A-203ENST00000409672 TXNDC2Q86VQ3 553 aa10.15□□□□□ -0.78
SCN9A-203ENST00000409672 SCLT1Q96NL6 688 aa10.15□□□□□ -0.78
SCN9A-203ENST00000409672 C1orf115Q9H7X2 142 aa10.15□□□□□ -0.78
SCN9A-203ENST00000409672 NUP133Q8WUM0 1156 aa10.15□□□□□ -0.79
SCN9A-203ENST00000409672 PDS5BQ9NTI5 1447 aa10.15□□□□□ -0.79
SCN9A-203ENST00000409672 SMC3Q9UQE7 1217 aa10.14□□□□□ -0.79
SCN9A-203ENST00000409672 RAB3GAP2Q9H2M9 1393 aa10.14□□□□□ -0.79
SCN9A-203ENST00000409672 ZKSCAN2Q63HK3 967 aa10.14□□□□□ -0.79
SCN9A-203ENST00000409672 SASS6Q6UVJ0 657 aa10.14□□□□□ -0.79
SCN9A-203ENST00000409672 NEBLO76041 1014 aa10.14□□□□□ -0.79
SCN9A-203ENST00000409672 TBC1D2BQ9UPU7 963 aa10.14□□□□□ -0.79
SCN9A-203ENST00000409672 CCDC144AA2RUR9 1427 aa10.14□□□□□ -0.79
SCN9A-203ENST00000409672 FKBP4Q02790 459 aaKnown RBP eCLIP10.14□□□□□ -0.79
SCN9A-203ENST00000409672 RNF20Q5VTR2 975 aa10.14□□□□□ -0.79
SCN9A-203ENST00000409672 FSD1Q9BTV5 496 aa10.13□□□□□ -0.79
SCN9A-203ENST00000409672 SSBP05455 408 aaKnown RBP eCLIP10.13□□□□□ -0.79
SCN9A-203ENST00000409672 PLCD4Q9BRC7 762 aa10.13□□□□□ -0.79
SCN9A-203ENST00000409672 UBTFL1P0CB47 393 aaPredicted RBP10.13□□□□□ -0.79
SCN9A-203ENST00000409672 ZC3H6P61129 1189 aaKnown RBP10.12□□□□□ -0.79
SCN9A-203ENST00000409672 ZNF76P36508 570 aa10.12□□□□□ -0.79
SCN9A-203ENST00000409672 MPHOSPH8Q99549 860 aa10.12□□□□□ -0.79
SCN9A-203ENST00000409672 WASHC2AQ641Q2 1341 aa10.12□□□□□ -0.79
SCN9A-203ENST00000409672 ZNF771Q7L3S4 317 aaPredicted RBP10.12□□□□□ -0.79
SCN9A-203ENST00000409672 LIG1P18858 919 aa10.12□□□□□ -0.79
SCN9A-203ENST00000409672 SSR1P43307 286 aaKnown RBP10.12□□□□□ -0.79
SCN9A-203ENST00000409672 TANGO6Q9C0B7 1094 aa10.12□□□□□ -0.79
SCN9A-203ENST00000409672 XBP1P17861 261 aa10.11□□□□□ -0.79
SCN9A-203ENST00000409672 SLC3A2P08195 630 aaKnown RBP10.11□□□□□ -0.79
SCN9A-203ENST00000409672 GPRASP1Q5JY77 1395 aa10.11□□□□□ -0.79
SCN9A-203ENST00000409672 OLFM4Q6UX06 510 aa10.11□□□□□ -0.79
SCN9A-203ENST00000409672 TNIKQ9UKE5 1360 aa10.1□□□□□ -0.79
SCN9A-203ENST00000409672 EXOC6Q8TAG9 804 aa10.1□□□□□ -0.79
SCN9A-203ENST00000409672 SLC26A8Q96RN1 970 aa10.1□□□□□ -0.79
SCN9A-203ENST00000409672 ATP6V1DQ9Y5K8 247 aa10.1□□□□□ -0.79
SCN9A-203ENST00000409672 TATP17735 454 aaPredicted RBP10.09□□□□□ -0.79
SCN9A-203ENST00000409672 CLEC11AQ9Y240 323 aa10.09□□□□□ -0.79
SCN9A-203ENST00000409672 VTI1AQ96AJ9 217 aa10.09□□□□□ -0.79
SCN9A-203ENST00000409672 SURF6O75683 361 aaKnown RBP10.09□□□□□ -0.79
SCN9A-203ENST00000409672 SART3Q15020 963 aaKnown RBP10.09□□□□□ -0.79
SCN9A-203ENST00000409672 MTHFSP49914 203 aa10.09□□□□□ -0.79
SCN9A-203ENST00000409672 IFT57Q9NWB7 429 aa10.09□□□□□ -0.79
SCN9A-203ENST00000409672 ANKIB1Q9P2G1 1089 aa10.09□□□□□ -0.79
SCN9A-203ENST00000409672 PTCD1O75127 700 aaKnown RBP10.09□□□□□ -0.79
SCN9A-203ENST00000409672 MAP7D2Q96T17 732 aa10.09□□□□□ -0.79
SCN9A-203ENST00000409672 ABCF2Q9UG63 623 aa10.08□□□□□ -0.8
SCN9A-203ENST00000409672 ERC2O15083 957 aa10.08□□□□□ -0.8
SCN9A-203ENST00000409672 MAGEC2Q9UBF1 373 aaPredicted RBP10.08□□□□□ -0.8
SCN9A-203ENST00000409672 NLRP13Q86W25 1043 aa10.08□□□□□ -0.8
SCN9A-203ENST00000409672 SMC2O95347 1197 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms