RNA–Protein interactions for RNA: ENST00000406757.2

GPC3-203, Transcript of glypican 3, humanhuman

TSL 2

Gene GPC3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-203ENST00000406757 PIK3R4Q99570 1358 aa12□□□□□ -0.49
GPC3-203ENST00000406757 PTPRUQ92729 1446 aa12□□□□□ -0.49
GPC3-203ENST00000406757 SIPA1L2Q9P2F8 1722 aaPredicted RBP12□□□□□ -0.49
GPC3-203ENST00000406757 ZEB1P37275 1124 aaPredicted RBP11.99□□□□□ -0.49
GPC3-203ENST00000406757 MEX3CQ5U5Q3 659 aaKnown RBP11.99□□□□□ -0.49
GPC3-203ENST00000406757 SPATA31E1Q6ZUB1 1445 aa11.99□□□□□ -0.49
GPC3-203ENST00000406757 LRP6O75581 1613 aa11.99□□□□□ -0.49
GPC3-203ENST00000406757 SETD1AO15047 1707 aaKnown RBP11.99□□□□□ -0.49
GPC3-203ENST00000406757 KIF1BO60333 1816 aa11.99□□□□□ -0.49
GPC3-203ENST00000406757 SPATA31A6Q5VVP1 1343 aa11.98□□□□□ -0.49
GPC3-203ENST00000406757 NBPF8Q3BBV2 869 aa11.97□□□□□ -0.49
GPC3-203ENST00000406757 BRINP3Q76B58 766 aa11.97□□□□□ -0.49
GPC3-203ENST00000406757 AHDC1Q5TGY3 1603 aaPredicted RBP11.97□□□□□ -0.49
GPC3-203ENST00000406757 NUTM2BA6NNL0 878 aaPredicted RBP11.95□□□□□ -0.5
GPC3-203ENST00000406757 NUTM2EB1AL46 878 aaPredicted RBP11.95□□□□□ -0.5
GPC3-203ENST00000406757 NUTM2AQ8IVF1 878 aaPredicted RBP11.95□□□□□ -0.5
GPC3-203ENST00000406757 TIMELESSQ9UNS1 1208 aa11.95□□□□□ -0.5
GPC3-203ENST00000406757 NRXN3Q9Y4C0 1643 aa11.95□□□□□ -0.5
GPC3-203ENST00000406757 ADGRF5Q8IZF2 1346 aa11.94□□□□□ -0.5
GPC3-203ENST00000406757 ZNF772Q68DY9 489 aaPredicted RBP11.94□□□□□ -0.5
GPC3-203ENST00000406757 SHPRHQ149N8 1683 aa11.94□□□□□ -0.5
GPC3-203ENST00000406757 METP08581 1390 aa11.93□□□□□ -0.5
GPC3-203ENST00000406757 SETBP1Q9Y6X0 1596 aa11.93□□□□□ -0.5
GPC3-203ENST00000406757 XRN1Q8IZH2 1706 aaKnown RBP11.93□□□□□ -0.5
GPC3-203ENST00000406757 DCCP43146 1447 aa11.93□□□□□ -0.5
GPC3-203ENST00000406757 ASXL1Q8IXJ9 1541 aa11.92□□□□□ -0.5
GPC3-203ENST00000406757 MST1RQ04912 1400 aa11.92□□□□□ -0.5
GPC3-203ENST00000406757 RPGRIP1LQ68CZ1 1315 aa11.91□□□□□ -0.5
GPC3-203ENST00000406757 DDX17Q92841 729 aaKnown RBP11.91□□□□□ -0.5
GPC3-203ENST00000406757 NEXMIFQ5QGS0 1516 aa11.91□□□□□ -0.5
GPC3-203ENST00000406757 PPLO60437 1756 aa11.9□□□□□ -0.51
GPC3-203ENST00000406757 ZBTB22O15209 634 aa11.89□□□□□ -0.51
GPC3-203ENST00000406757 VGFO15240 615 aaPredicted RBP11.89□□□□□ -0.51
GPC3-203ENST00000406757 RXRBP28702 533 aa11.89□□□□□ -0.51
GPC3-203ENST00000406757 NBPF1Q3BBV0 1214 aa11.89□□□□□ -0.51
GPC3-203ENST00000406757 CFAP70Q5T0N1 1121 aa11.89□□□□□ -0.51
GPC3-203ENST00000406757 UPF1Q92900 1129 aaKnown RBP eCLIP11.89□□□□□ -0.51
GPC3-203ENST00000406757 AFF2P51816 1311 aa11.88□□□□□ -0.51
GPC3-203ENST00000406757 ADGRL3Q9HAR2 1447 aa11.88□□□□□ -0.51
GPC3-203ENST00000406757 REM2Q8IYK8 340 aaPredicted RBP11.88□□□□□ -0.51
GPC3-203ENST00000406757 LRRC59Q96AG4 307 aaKnown RBP11.88□□□□□ -0.51
GPC3-203ENST00000406757 IFT172Q9UG01 1749 aa11.88□□□□□ -0.51
GPC3-203ENST00000406757 PRAG1Q86YV5 1406 aa11.87□□□□□ -0.51
GPC3-203ENST00000406757 NHSL1Q5SYE7 1610 aa11.87□□□□□ -0.51
GPC3-203ENST00000406757 NALCNQ8IZF0 1738 aa11.87□□□□□ -0.51
GPC3-203ENST00000406757 TMEM132EQ6IEE7 984 aa11.86□□□□□ -0.51
GPC3-203ENST00000406757 C8orf37Q96NL8 207 aa11.86□□□□□ -0.51
GPC3-203ENST00000406757 HIRIP3Q9BW71 556 aaPredicted RBP11.86□□□□□ -0.51
GPC3-203ENST00000406757 PNPLA6Q8IY17 1366 aa11.86□□□□□ -0.51
GPC3-203ENST00000406757 MYOM2P54296 1465 aa11.85□□□□□ -0.51
GPC3-203ENST00000406757 C1orf167Q5SNV9 1468 aa11.84□□□□□ -0.51
GPC3-203ENST00000406757 C14orf93Q9H972 538 aaKnown RBP11.84□□□□□ -0.51
GPC3-203ENST00000406757 ROBO2Q9HCK4 1378 aa11.83□□□□□ -0.52
GPC3-203ENST00000406757 ADAMTS2O95450 1211 aa11.83□□□□□ -0.52
GPC3-203ENST00000406757 STAC3Q96MF2 364 aa11.83□□□□□ -0.52
GPC3-203ENST00000406757 ORAI2Q96SN7 254 aa11.83□□□□□ -0.52
GPC3-203ENST00000406757 CARD11Q9BXL7 1154 aa11.83□□□□□ -0.52
GPC3-203ENST00000406757 QTRT2Q9H974 415 aaKnown RBP11.83□□□□□ -0.52
GPC3-203ENST00000406757 CDK12Q9NYV4 1490 aaPredicted RBP11.83□□□□□ -0.52
GPC3-203ENST00000406757 NRXN1Q9ULB1 1477 aa11.83□□□□□ -0.52
GPC3-203ENST00000406757 ROCK2O75116 1388 aaKnown RBP11.82□□□□□ -0.52
GPC3-203ENST00000406757 SP7Q8TDD2 431 aaPredicted RBP11.82□□□□□ -0.52
GPC3-203ENST00000406757 STK26Q9P289 416 aa11.82□□□□□ -0.52
GPC3-203ENST00000406757 PIK3C2GO75747 1445 aa11.82□□□□□ -0.52
GPC3-203ENST00000406757 PTCH1Q13635 1447 aa11.82□□□□□ -0.52
GPC3-203ENST00000406757 RGS12O14924 1447 aa11.81□□□□□ -0.52
GPC3-203ENST00000406757 PIP4P2Q8N4L2 257 aa11.81□□□□□ -0.52
GPC3-203ENST00000406757 NGLY1Q96IV0 654 aa11.81□□□□□ -0.52
GPC3-203ENST00000406757 TRPM1Q7Z4N2 1603 aa11.81□□□□□ -0.52
GPC3-203ENST00000406757 RBM6P78332 1123 aaKnown RBP11.8□□□□□ -0.52
GPC3-203ENST00000406757 TRAK1Q9UPV9 953 aa11.8□□□□□ -0.52
GPC3-203ENST00000406757 RALGAPBQ86X10 1494 aa11.8□□□□□ -0.52
GPC3-203ENST00000406757 SOS2Q07890 1332 aaPredicted RBP11.8□□□□□ -0.52
GPC3-203ENST00000406757 HSPA5P11021 654 aaKnown RBP11.79□□□□□ -0.52
GPC3-203ENST00000406757 LAMC1P11047 1609 aa11.78□□□□□ -0.52
GPC3-203ENST00000406757 USP21Q9UK80 565 aa11.77□□□□□ -0.53
GPC3-203ENST00000406757 EIF4G2P78344 907 aaKnown RBP eCLIP11.76□□□□□ -0.53
GPC3-203ENST00000406757 ESCO1Q5FWF5 840 aa11.76□□□□□ -0.53
GPC3-203ENST00000406757 SRCAPQ6ZRS2 3230 aa11.76□□□□□ -0.53
GPC3-203ENST00000406757 ST20-MTHFSA0A0A6YYL1 179 aa11.75□□□□□ -0.53
GPC3-203ENST00000406757 NUTM2FA1L443 756 aa11.75□□□□□ -0.53
GPC3-203ENST00000406757 PITPNM1O00562 1244 aa11.75□□□□□ -0.53
GPC3-203ENST00000406757 XPCQ01831 940 aaPredicted RBP11.75□□□□□ -0.53
GPC3-203ENST00000406757 SAFB2Q14151 953 aaKnown RBP eCLIP11.75□□□□□ -0.53
GPC3-203ENST00000406757 GPRASP1Q5JY77 1395 aa11.75□□□□□ -0.53
GPC3-203ENST00000406757 USP47Q96K76 1375 aa11.75□□□□□ -0.53
GPC3-203ENST00000406757 ADGRB1O14514 1584 aa11.75□□□□□ -0.53
GPC3-203ENST00000406757 KIAA1210Q9ULL0 1709 aa11.74□□□□□ -0.53
GPC3-203ENST00000406757 WAPLQ7Z5K2 1190 aa11.74□□□□□ -0.53
GPC3-203ENST00000406757 FNBP4Q8N3X1 1017 aaPredicted RBP11.74□□□□□ -0.53
GPC3-203ENST00000406757 TRPC5Q9UL62 973 aaPredicted RBP11.74□□□□□ -0.53
GPC3-203ENST00000406757 FOXO3O43524 673 aa11.73□□□□□ -0.53
GPC3-203ENST00000406757 ATXN8OSP0DMR3 200 aa11.73□□□□□ -0.53
GPC3-203ENST00000406757 CDC42BPGQ6DT37 1551 aa11.73□□□□□ -0.53
GPC3-203ENST00000406757 NPHP3Q7Z494 1330 aa11.73□□□□□ -0.53
GPC3-203ENST00000406757 YTHDC2Q9H6S0 1430 aaKnown RBP11.73□□□□□ -0.53
GPC3-203ENST00000406757 COL22A1Q8NFW1 1626 aaPredicted RBP11.72□□□□□ -0.53
GPC3-203ENST00000406757 PXDNQ92626 1479 aa11.72□□□□□ -0.53
GPC3-203ENST00000406757 ATAD2Q6PL18 1390 aa11.72□□□□□ -0.53
GPC3-203ENST00000406757 EP400Q96L91 3159 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms