RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 KIF20AO95235 890 aa11.3□□□□□ -0.6
COL28A1-201ENST00000399429 RAB3GAP1Q15042 981 aa11.3□□□□□ -0.6
COL28A1-201ENST00000399429 CCDC27Q2M243 656 aa11.3□□□□□ -0.6
COL28A1-201ENST00000399429 PRIMPOLQ96LW4 560 aa11.3□□□□□ -0.6
COL28A1-201ENST00000399429 FYCO1Q9BQS8 1478 aa11.3□□□□□ -0.6
COL28A1-201ENST00000399429 ATAD2BQ9ULI0 1458 aa11.3□□□□□ -0.6
COL28A1-201ENST00000399429 NOLC1Q14978 699 aaKnown RBP eCLIP11.29□□□□□ -0.6
COL28A1-201ENST00000399429 RBSNQ9H1K0 784 aa11.29□□□□□ -0.6
COL28A1-201ENST00000399429 ANO2Q9NQ90 1003 aa11.29□□□□□ -0.6
COL28A1-201ENST00000399429 TNNQ9UQP3 1299 aa11.29□□□□□ -0.6
COL28A1-201ENST00000399429 NKTRP30414 1462 aaKnown RBP11.29□□□□□ -0.6
COL28A1-201ENST00000399429 GOLGA6L19H0YKK7 550 aa11.29□□□□□ -0.6
COL28A1-201ENST00000399429 CCAR2Q8N163 923 aaKnown RBP11.29□□□□□ -0.6
COL28A1-201ENST00000399429 CWC22Q9HCG8 908 aaKnown RBP11.29□□□□□ -0.6
COL28A1-201ENST00000399429 FIBPO43427 364 aa11.29□□□□□ -0.6
COL28A1-201ENST00000399429 TERF1P54274 439 aa11.29□□□□□ -0.6
COL28A1-201ENST00000399429 GNL2Q13823 731 aaKnown RBP11.29□□□□□ -0.6
COL28A1-201ENST00000399429 TRIM5Q9C035 493 aa11.29□□□□□ -0.6
COL28A1-201ENST00000399429 NOB1Q9ULX3 412 aaKnown RBP11.29□□□□□ -0.6
COL28A1-201ENST00000399429 HS1BP3Q53T59 392 aa11.28□□□□□ -0.6
COL28A1-201ENST00000399429 PTPN23Q9H3S7 1636 aa11.28□□□□□ -0.6
COL28A1-201ENST00000399429 GDPD2Q9HCC8 539 aa11.28□□□□□ -0.6
COL28A1-201ENST00000399429 ATP6V1DQ9Y5K8 247 aa11.28□□□□□ -0.6
COL28A1-201ENST00000399429 RPRD2Q5VT52 1461 aaKnown RBP11.28□□□□□ -0.6
COL28A1-201ENST00000399429 BECN2A8MW95 431 aa11.28□□□□□ -0.6
COL28A1-201ENST00000399429 RIPK4P57078 832 aa11.28□□□□□ -0.6
COL28A1-201ENST00000399429 GPS2Q13227 327 aa11.27□□□□□ -0.6
COL28A1-201ENST00000399429 SLC4A10Q6U841 1118 aa11.27□□□□□ -0.6
COL28A1-201ENST00000399429 SPINK5Q9NQ38 1064 aaPredicted RBP11.27□□□□□ -0.6
COL28A1-201ENST00000399429 PLEKHH1Q9ULM0 1364 aa11.27□□□□□ -0.6
COL28A1-201ENST00000399429 NINLQ9Y2I6 1382 aa11.27□□□□□ -0.6
COL28A1-201ENST00000399429 GAS2L2Q8NHY3 880 aa11.27□□□□□ -0.61
COL28A1-201ENST00000399429 GOLGA6L1Q8N7Z2 621 aa11.27□□□□□ -0.61
COL28A1-201ENST00000399429 VPS37CA5D8V6 355 aaPredicted RBP11.26□□□□□ -0.61
COL28A1-201ENST00000399429 ATF7IPQ6VMQ6 1270 aa11.26□□□□□ -0.61
COL28A1-201ENST00000399429 HOMER1Q86YM7 354 aa11.26□□□□□ -0.61
COL28A1-201ENST00000399429 OS9Q13438 667 aaPredicted RBP11.26□□□□□ -0.61
COL28A1-201ENST00000399429 LRSAM1Q6UWE0 723 aa11.26□□□□□ -0.61
COL28A1-201ENST00000399429 C16orf45Q96MC5 204 aaPredicted RBP11.26□□□□□ -0.61
COL28A1-201ENST00000399429 ADCY5O95622 1261 aa11.26□□□□□ -0.61
COL28A1-201ENST00000399429 U2AF2P26368 475 aaKnown RBP eCLIP11.26□□□□□ -0.61
COL28A1-201ENST00000399429 SMC5Q8IY18 1101 aa11.26□□□□□ -0.61
COL28A1-201ENST00000399429 C17orf53Q8N3J3 647 aaPredicted RBP11.26□□□□□ -0.61
COL28A1-201ENST00000399429 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.26□□□□□ -0.61
COL28A1-201ENST00000399429 TPM3P06753 285 aa11.26□□□□□ -0.61
COL28A1-201ENST00000399429 RLBP1P12271 317 aa11.26□□□□□ -0.61
COL28A1-201ENST00000399429 DMTNQ08495 405 aa11.26□□□□□ -0.61
COL28A1-201ENST00000399429 TIGD1Q96MW7 591 aa11.26□□□□□ -0.61
COL28A1-201ENST00000399429 KIAA1107Q9UPP5 1409 aa11.26□□□□□ -0.61
COL28A1-201ENST00000399429 SRPK2P78362 688 aaKnown RBP11.25□□□□□ -0.61
COL28A1-201ENST00000399429 GORABQ5T7V8 394 aa11.25□□□□□ -0.61
COL28A1-201ENST00000399429 PAXIP1Q6ZW49 1069 aaPredicted RBP11.25□□□□□ -0.61
COL28A1-201ENST00000399429 TMEM57Q8N5G2 664 aa11.25□□□□□ -0.61
COL28A1-201ENST00000399429 PLEKHH2Q8IVE3 1493 aa11.25□□□□□ -0.61
COL28A1-201ENST00000399429 MTHFSP49914 203 aa11.25□□□□□ -0.61
COL28A1-201ENST00000399429 PPP1R9BQ96SB3 815 aa11.25□□□□□ -0.61
COL28A1-201ENST00000399429 PEG3Q9GZU2 1588 aa11.25□□□□□ -0.61
COL28A1-201ENST00000399429 CHMP7Q8WUX9 453 aaPredicted RBP11.24□□□□□ -0.61
COL28A1-201ENST00000399429 FBXW7Q969H0 707 aa11.24□□□□□ -0.61
COL28A1-201ENST00000399429 CALCOCO1Q9P1Z2 691 aa11.24□□□□□ -0.61
COL28A1-201ENST00000399429 TOP2BQ02880 1626 aa11.24□□□□□ -0.61
COL28A1-201ENST00000399429 FAM184AQ8NB25 1140 aa11.24□□□□□ -0.61
COL28A1-201ENST00000399429 STAG3Q9UJ98 1225 aa11.24□□□□□ -0.61
COL28A1-201ENST00000399429 PCF11O94913 1555 aaKnown RBP11.24□□□□□ -0.61
COL28A1-201ENST00000399429 HMMRO75330 724 aa11.23□□□□□ -0.61
COL28A1-201ENST00000399429 TBC1D9Q6ZT07 1266 aa11.23□□□□□ -0.61
COL28A1-201ENST00000399429 MYRIPQ8NFW9 859 aa11.23□□□□□ -0.61
COL28A1-201ENST00000399429 SNX21Q969T3 373 aa11.23□□□□□ -0.61
COL28A1-201ENST00000399429 TRAK1Q9UPV9 953 aa11.23□□□□□ -0.61
COL28A1-201ENST00000399429 NCAPD3P42695 1498 aa11.23□□□□□ -0.61
COL28A1-201ENST00000399429 RTF1Q92541 710 aaKnown RBP11.23□□□□□ -0.61
COL28A1-201ENST00000399429 SMC3Q9UQE7 1217 aa11.23□□□□□ -0.61
COL28A1-201ENST00000399429 ANKRD50Q9ULJ7 1429 aa11.23□□□□□ -0.61
COL28A1-201ENST00000399429 HCLS1P14317 486 aaPredicted RBP11.23□□□□□ -0.61
COL28A1-201ENST00000399429 USP19O94966 1318 aa11.22□□□□□ -0.61
COL28A1-201ENST00000399429 GTF2F1P35269 517 aaKnown RBP eCLIP11.22□□□□□ -0.61
COL28A1-201ENST00000399429 ARGLU1Q9NWB6 273 aaPredicted RBP11.22□□□□□ -0.61
COL28A1-201ENST00000399429 ZNF500O60304 480 aaPredicted RBP11.22□□□□□ -0.61
COL28A1-201ENST00000399429 MNS1Q8NEH6 495 aa11.22□□□□□ -0.61
COL28A1-201ENST00000399429 BICD2Q8TD16 824 aa11.22□□□□□ -0.61
COL28A1-201ENST00000399429 GCC1Q96CN9 775 aa11.22□□□□□ -0.61
COL28A1-201ENST00000399429 PARD3Q8TEW0 1356 aa11.22□□□□□ -0.61
COL28A1-201ENST00000399429 FGD5Q6ZNL6 1462 aa11.21□□□□□ -0.61
COL28A1-201ENST00000399429 TNNT1P13805 278 aa11.21□□□□□ -0.61
COL28A1-201ENST00000399429 SKIDA1Q1XH10 827 aa11.21□□□□□ -0.61
COL28A1-201ENST00000399429 DNAJC2Q99543 621 aaKnown RBP11.21□□□□□ -0.62
COL28A1-201ENST00000399429 WDR63Q8IWG1 891 aa11.2□□□□□ -0.62
COL28A1-201ENST00000399429 SSH1Q8WYL5 1049 aa11.2□□□□□ -0.62
COL28A1-201ENST00000399429 CCDC192P0DO97 292 aa11.2□□□□□ -0.62
COL28A1-201ENST00000399429 TRIM27P14373 513 aa11.2□□□□□ -0.62
COL28A1-201ENST00000399429 IRX3P78415 501 aaPredicted RBP11.2□□□□□ -0.62
COL28A1-201ENST00000399429 TRIM34Q9BYJ4 488 aa11.2□□□□□ -0.62
COL28A1-201ENST00000399429 ERBINQ96RT1 1412 aa11.2□□□□□ -0.62
COL28A1-201ENST00000399429 POLR3GO15318 223 aaPredicted RBP11.2□□□□□ -0.62
COL28A1-201ENST00000399429 NOM1Q5C9Z4 860 aaKnown RBP11.2□□□□□ -0.62
COL28A1-201ENST00000399429 CWC15Q9P013 229 aaKnown RBP11.2□□□□□ -0.62
COL28A1-201ENST00000399429 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.2□□□□□ -0.62
COL28A1-201ENST00000399429 V9GYY5 206 aaPredicted RBP11.2□□□□□ -0.62
COL28A1-201ENST00000399429 UTP14CQ5TAP6 766 aaKnown RBP11.19□□□□□ -0.62
COL28A1-201ENST00000399429 STK26Q9P289 416 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 645.5 ms