RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 DIAPH3Q9NSV4 1193 aa13.47□□□□□ -0.25
HPS4-202ENST00000398145 NOB1Q9ULX3 412 aaKnown RBP13.47□□□□□ -0.25
HPS4-202ENST00000398145 RUFY2Q8WXA3 655 aa13.47□□□□□ -0.25
HPS4-202ENST00000398145 ZKSCAN1P17029 563 aaPredicted RBP13.46□□□□□ -0.25
HPS4-202ENST00000398145 AMPHP49418 695 aa13.46□□□□□ -0.25
HPS4-202ENST00000398145 TBC1D2Q9BYX2 928 aa13.46□□□□□ -0.25
HPS4-202ENST00000398145 SLC12A5Q9H2X9 1139 aa13.46□□□□□ -0.25
HPS4-202ENST00000398145 TOPBP1Q92547 1522 aa13.46□□□□□ -0.25
HPS4-202ENST00000398145 ZNF771Q7L3S4 317 aaPredicted RBP13.45□□□□□ -0.26
HPS4-202ENST00000398145 SMC3Q9UQE7 1217 aa13.45□□□□□ -0.26
HPS4-202ENST00000398145 H3BQV1 296 aa13.45□□□□□ -0.26
HPS4-202ENST00000398145 HMOX1P09601 288 aa13.45□□□□□ -0.26
HPS4-202ENST00000398145 NEK4P51957 841 aa13.45□□□□□ -0.26
HPS4-202ENST00000398145 RBM10P98175 930 aaKnown RBP13.45□□□□□ -0.26
HPS4-202ENST00000398145 SF3A1Q15459 793 aaKnown RBP13.45□□□□□ -0.26
HPS4-202ENST00000398145 IFFO2Q5TF58 517 aa13.45□□□□□ -0.26
HPS4-202ENST00000398145 MCM2P49736 904 aa13.45□□□□□ -0.26
HPS4-202ENST00000398145 TMEM132EQ6IEE7 984 aa13.45□□□□□ -0.26
HPS4-202ENST00000398145 CWC22Q9HCG8 908 aaKnown RBP13.45□□□□□ -0.26
HPS4-202ENST00000398145 ABCC5O15440 1437 aa13.45□□□□□ -0.26
HPS4-202ENST00000398145 HMGN5P82970 282 aaKnown RBP13.45□□□□□ -0.26
HPS4-202ENST00000398145 CHMP3Q9Y3E7 222 aa13.45□□□□□ -0.26
HPS4-202ENST00000398145 CHD1LQ86WJ1 897 aa13.44□□□□□ -0.26
HPS4-202ENST00000398145 ZNF592Q92610 1267 aa13.44□□□□□ -0.26
HPS4-202ENST00000398145 LRPPRCP42704 1394 aaKnown RBP13.44□□□□□ -0.26
HPS4-202ENST00000398145 GRIN2BQ13224 1484 aa13.44□□□□□ -0.26
HPS4-202ENST00000398145 FAM184AQ8NB25 1140 aa13.44□□□□□ -0.26
HPS4-202ENST00000398145 NKTRP30414 1462 aaKnown RBP13.43□□□□□ -0.26
HPS4-202ENST00000398145 VPS37CA5D8V6 355 aaPredicted RBP13.43□□□□□ -0.26
HPS4-202ENST00000398145 ZSCAN30Q86W11 494 aa13.43□□□□□ -0.26
HPS4-202ENST00000398145 CABP2Q9NPB3 220 aa13.43□□□□□ -0.26
HPS4-202ENST00000398145 CDK13Q14004 1512 aaKnown RBP13.43□□□□□ -0.26
HPS4-202ENST00000398145 PTPRKQ15262 1439 aa13.43□□□□□ -0.26
HPS4-202ENST00000398145 RARSP54136 660 aaKnown RBP13.43□□□□□ -0.26
HPS4-202ENST00000398145 C1orf115Q9H7X2 142 aa13.43□□□□□ -0.26
HPS4-202ENST00000398145 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.42□□□□□ -0.26
HPS4-202ENST00000398145 FKBP5Q13451 457 aaPredicted RBP13.42□□□□□ -0.26
HPS4-202ENST00000398145 NGDNQ8NEJ9 315 aaKnown RBP13.42□□□□□ -0.26
HPS4-202ENST00000398145 CCDC34Q96HJ3 373 aa13.42□□□□□ -0.26
HPS4-202ENST00000398145 TSPY26PQ9H489 355 aa13.42□□□□□ -0.26
HPS4-202ENST00000398145 PRKAR2BP31323 418 aa13.41□□□□□ -0.26
HPS4-202ENST00000398145 BICD2Q8TD16 824 aa13.41□□□□□ -0.26
HPS4-202ENST00000398145 ABCA10Q8WWZ4 1543 aa13.41□□□□□ -0.26
HPS4-202ENST00000398145 NUTM2FA1L443 756 aa13.41□□□□□ -0.26
HPS4-202ENST00000398145 IFT57Q9NWB7 429 aa13.4□□□□□ -0.26
HPS4-202ENST00000398145 AFAP1Q8N556 730 aa13.4□□□□□ -0.26
HPS4-202ENST00000398145 TPM3P06753 285 aa13.4□□□□□ -0.26
HPS4-202ENST00000398145 TWISTNBQ3B726 338 aaPredicted RBP13.39□□□□□ -0.27
HPS4-202ENST00000398145 CHMP4CQ96CF2 233 aa13.39□□□□□ -0.27
HPS4-202ENST00000398145 LTV1Q96GA3 475 aaPredicted RBP13.39□□□□□ -0.27
HPS4-202ENST00000398145 LETM1O95202 739 aaPredicted RBP13.39□□□□□ -0.27
HPS4-202ENST00000398145 TBC1D32Q96NH3 1257 aa13.39□□□□□ -0.27
HPS4-202ENST00000398145 GORABQ5T7V8 394 aa13.39□□□□□ -0.27
HPS4-202ENST00000398145 SASS6Q6UVJ0 657 aa13.39□□□□□ -0.27
HPS4-202ENST00000398145 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.39□□□□□ -0.27
HPS4-202ENST00000398145 IGHDP01880 384 aa13.38□□□□□ -0.27
HPS4-202ENST00000398145 ZNF428Q96B54 188 aa13.38□□□□□ -0.27
HPS4-202ENST00000398145 BIVM-ERCC5R4GMW8 1640 aa13.38□□□□□ -0.27
HPS4-202ENST00000398145 RNF20Q5VTR2 975 aa13.38□□□□□ -0.27
HPS4-202ENST00000398145 UBE2Q2Q8WVN8 375 aa13.38□□□□□ -0.27
HPS4-202ENST00000398145 GOLGA6L1Q8N7Z2 621 aa13.37□□□□□ -0.27
HPS4-202ENST00000398145 ARHGAP5Q13017 1502 aa13.37□□□□□ -0.27
HPS4-202ENST00000398145 C8orf34Q49A92 452 aa13.37□□□□□ -0.27
HPS4-202ENST00000398145 TMEM57Q8N5G2 664 aa13.37□□□□□ -0.27
HPS4-202ENST00000398145 PEG3Q9GZU2 1588 aa13.37□□□□□ -0.27
HPS4-202ENST00000398145 SYNJ2O15056 1496 aa13.37□□□□□ -0.27
HPS4-202ENST00000398145 UQCRHLA0A096LP55 91 aa13.37□□□□□ -0.27
HPS4-202ENST00000398145 ERC2O15083 957 aa13.37□□□□□ -0.27
HPS4-202ENST00000398145 UQCRHP07919 91 aa13.37□□□□□ -0.27
HPS4-202ENST00000398145 IFIT2P09913 472 aaKnown RBP13.37□□□□□ -0.27
HPS4-202ENST00000398145 TSPYL4Q9UJ04 414 aa13.37□□□□□ -0.27
HPS4-202ENST00000398145 DNMBPQ6XZF7 1577 aa13.36□□□□□ -0.27
HPS4-202ENST00000398145 NECTIN2Q92692 538 aa13.36□□□□□ -0.27
HPS4-202ENST00000398145 HSP90AB4PQ58FF6 505 aa13.36□□□□□ -0.27
HPS4-202ENST00000398145 C9orf78Q9NZ63 289 aaPredicted RBP13.36□□□□□ -0.27
HPS4-202ENST00000398145 TNPO1Q92973 898 aaKnown RBP13.35□□□□□ -0.27
HPS4-202ENST00000398145 NESP48681 1621 aa13.35□□□□□ -0.27
HPS4-202ENST00000398145 GNAI3P08754 354 aa13.35□□□□□ -0.27
HPS4-202ENST00000398145 EIF2S2P20042 333 aaKnown RBP13.34□□□□□ -0.27
HPS4-202ENST00000398145 CLCN1P35523 988 aa13.34□□□□□ -0.27
HPS4-202ENST00000398145 SSH1Q8WYL5 1049 aa13.34□□□□□ -0.27
HPS4-202ENST00000398145 TMPOP42166 694 aaKnown RBP13.34□□□□□ -0.27
HPS4-202ENST00000398145 HOMER1Q86YM7 354 aa13.34□□□□□ -0.27
HPS4-202ENST00000398145 FIBPO43427 364 aa13.34□□□□□ -0.27
HPS4-202ENST00000398145 XRCC6P12956 609 aaKnown RBP eCLIP13.34□□□□□ -0.276e-6■■■■■ 31.4
HPS4-202ENST00000398145 TEFQ10587 303 aa13.34□□□□□ -0.27
HPS4-202ENST00000398145 RNF123Q5XPI4 1314 aa13.34□□□□□ -0.27
HPS4-202ENST00000398145 WDR33Q9C0J8 1336 aaKnown RBP13.34□□□□□ -0.27
HPS4-202ENST00000398145 CAMSAP2Q08AD1 1489 aa13.33□□□□□ -0.27
HPS4-202ENST00000398145 CCAR2Q8N163 923 aaKnown RBP13.33□□□□□ -0.28
HPS4-202ENST00000398145 TRIM5Q9C035 493 aa13.33□□□□□ -0.28
HPS4-202ENST00000398145 CCDC27Q2M243 656 aa13.33□□□□□ -0.28
HPS4-202ENST00000398145 UBTFL1P0CB47 393 aaPredicted RBP13.33□□□□□ -0.28
HPS4-202ENST00000398145 MPNDQ8N594 471 aa13.33□□□□□ -0.28
HPS4-202ENST00000398145 PDCL3Q9H2J4 239 aa13.33□□□□□ -0.28
HPS4-202ENST00000398145 CCDC73Q6ZRK6 1079 aa13.32□□□□□ -0.28
HPS4-202ENST00000398145 PARD3Q8TEW0 1356 aa13.32□□□□□ -0.28
HPS4-202ENST00000398145 TEX35Q5T0J7 233 aa13.32□□□□□ -0.28
HPS4-202ENST00000398145 PDCP20941 246 aa13.31□□□□□ -0.28
HPS4-202ENST00000398145 GPS2Q13227 327 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms