RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 CNTLNQ9NXG0 1405 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 EXOC6Q8TAG9 804 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 FANCIQ9NVI1 1328 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 GRIN2BQ13224 1484 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 PLEKHH2Q8IVE3 1493 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 HIP1O00291 1037 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 MCM2P49736 904 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 CCDC43Q96MW1 224 aaKnown RBP6.6□□□□□ -1.35
VPS13C-204ENST00000395898 CCDC7Q96M83 1385 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 CNTROBQ8N137 903 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 FOXD4L6Q3SYB3 417 aaPredicted RBP6.6□□□□□ -1.35
VPS13C-204ENST00000395898 CCDC30Q5VVM6 783 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 FOXD4L3Q6VB84 417 aaPredicted RBP6.6□□□□□ -1.35
VPS13C-204ENST00000395898 CCAR2Q8N163 923 aaKnown RBP6.6□□□□□ -1.35
VPS13C-204ENST00000395898 TEX35Q5T0J7 233 aa6.59□□□□□ -1.35
VPS13C-204ENST00000395898 RBM33Q96EV2 1170 aaKnown RBP6.59□□□□□ -1.35
VPS13C-204ENST00000395898 NCOA2Q15596 1464 aa6.59□□□□□ -1.35
VPS13C-204ENST00000395898 MEX3CQ5U5Q3 659 aaKnown RBP6.59□□□□□ -1.35
VPS13C-204ENST00000395898 IGF1RP08069 1367 aa6.59□□□□□ -1.35
VPS13C-204ENST00000395898 RAD21O60216 631 aa6.59□□□□□ -1.35
VPS13C-204ENST00000395898 ARID3AQ99856 593 aa6.59□□□□□ -1.35
VPS13C-204ENST00000395898 LETM1O95202 739 aaPredicted RBP6.59□□□□□ -1.35
VPS13C-204ENST00000395898 HOMER1Q86YM7 354 aa6.59□□□□□ -1.35
VPS13C-204ENST00000395898 DHX16O60231 1041 aaKnown RBP6.59□□□□□ -1.36
VPS13C-204ENST00000395898 GPRASP1Q5JY77 1395 aa6.59□□□□□ -1.36
VPS13C-204ENST00000395898 UBTFL1P0CB47 393 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-204ENST00000395898 GAS2L2Q8NHY3 880 aa6.58□□□□□ -1.36
VPS13C-204ENST00000395898 FAM69CQ0P6D2 419 aa6.58□□□□□ -1.36
VPS13C-204ENST00000395898 NECTIN2Q92692 538 aa6.58□□□□□ -1.36
VPS13C-204ENST00000395898 CLASRPQ8N2M8 674 aaKnown RBP6.58□□□□□ -1.36
VPS13C-204ENST00000395898 SART3Q15020 963 aaKnown RBP6.58□□□□□ -1.36
VPS13C-204ENST00000395898 HFM1A2PYH4 1435 aa6.58□□□□□ -1.36
VPS13C-204ENST00000395898 GNAI3P08754 354 aa6.58□□□□□ -1.36
VPS13C-204ENST00000395898 PDCP20941 246 aa6.58□□□□□ -1.36
VPS13C-204ENST00000395898 PDE4CQ08493 712 aa6.58□□□□□ -1.36
VPS13C-204ENST00000395898 CCDC73Q6ZRK6 1079 aa6.58□□□□□ -1.36
VPS13C-204ENST00000395898 AMER1Q5JTC6 1135 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-204ENST00000395898 AEBP2Q6ZN18 517 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-204ENST00000395898 C22orf23Q9BZE7 217 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 EPS15P42566 896 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 CDR1P51861 262 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 OLFM4Q6UX06 510 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 RAD54L2Q9Y4B4 1467 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 HMOX1P09601 288 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 ODF2Q5BJF6 829 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 ERC1Q8IUD2 1116 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 ZNF692Q9BU19 519 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-204ENST00000395898 TOP2BQ02880 1626 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 KIF6Q6ZMV9 814 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 ZNF592Q92610 1267 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 TBC1D2BQ9UPU7 963 aa6.57□□□□□ -1.36
VPS13C-204ENST00000395898 VPS37CA5D8V6 355 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-204ENST00000395898 RUFY1Q96T51 708 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 LNPKQ9C0E8 428 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 KIF7Q2M1P5 1343 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 SLC3A2P08195 630 aaKnown RBP6.56□□□□□ -1.36
VPS13C-204ENST00000395898 ABTB2Q8N961 1025 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 ACBD3Q9H3P7 528 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 CUL7Q14999 1698 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 CCDC173Q0VFZ6 552 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 NEUROD6Q96NK8 337 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 ARGLU1Q9NWB6 273 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-204ENST00000395898 MTHFSP49914 203 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 CT47B1P0C2W7 299 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-204ENST00000395898 CDC45O75419 566 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-204ENST00000395898 NCAPD3P42695 1498 aa6.56□□□□□ -1.36
VPS13C-204ENST00000395898 AK7Q96M32 723 aa6.55□□□□□ -1.36
VPS13C-204ENST00000395898 WASHC4Q2M389 1173 aa6.55□□□□□ -1.36
VPS13C-204ENST00000395898 GCC1Q96CN9 775 aa6.55□□□□□ -1.36
VPS13C-204ENST00000395898 MYO6Q9UM54 1294 aa6.55□□□□□ -1.36
VPS13C-204ENST00000395898 R3HCC1Q9Y3T6 440 aaKnown RBP6.55□□□□□ -1.36
VPS13C-204ENST00000395898 RDXP35241 583 aaKnown RBP6.55□□□□□ -1.36
VPS13C-204ENST00000395898 NLRP6P59044 892 aa6.55□□□□□ -1.36
VPS13C-204ENST00000395898 DHX8Q14562 1220 aaKnown RBP6.55□□□□□ -1.36
VPS13C-204ENST00000395898 HMGB2P26583 209 aaKnown RBP6.55□□□□□ -1.36
VPS13C-204ENST00000395898 CT47A1Q5JQC4 288 aaPredicted RBP6.55□□□□□ -1.36
VPS13C-204ENST00000395898 CWC22Q9HCG8 908 aaKnown RBP6.55□□□□□ -1.36
VPS13C-204ENST00000395898 PLEKHO1Q53GL0 409 aaPredicted RBP6.55□□□□□ -1.36
VPS13C-204ENST00000395898 CCDC27Q2M243 656 aa6.55□□□□□ -1.36
VPS13C-204ENST00000395898 TXLNAP40222 546 aa6.55□□□□□ -1.36
VPS13C-204ENST00000395898 AIMP1Q12904 312 aaKnown RBP6.55□□□□□ -1.36
VPS13C-204ENST00000395898 MTERF4Q7Z6M4 381 aaKnown RBP6.55□□□□□ -1.36
VPS13C-204ENST00000395898 ANKRD1Q15327 319 aa6.54□□□□□ -1.36
VPS13C-204ENST00000395898 FBXW7Q969H0 707 aa6.54□□□□□ -1.36
VPS13C-204ENST00000395898 GNAI2P04899 355 aa6.54□□□□□ -1.36
VPS13C-204ENST00000395898 PDIA4P13667 645 aaKnown RBP6.54□□□□□ -1.36
VPS13C-204ENST00000395898 PDE3AQ14432 1141 aa6.54□□□□□ -1.36
VPS13C-204ENST00000395898 SLC4A3P48751 1232 aa6.54□□□□□ -1.36
VPS13C-204ENST00000395898 SDF4Q9BRK5 362 aa6.54□□□□□ -1.36
VPS13C-204ENST00000395898 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-204ENST00000395898 MBD3O95983 291 aa6.54□□□□□ -1.36
VPS13C-204ENST00000395898 TIAM1Q13009 1591 aa6.54□□□□□ -1.36
VPS13C-204ENST00000395898 HSP90B2PQ58FF3 399 aa6.54□□□□□ -1.36
VPS13C-204ENST00000395898 PNISRQ8TF01 805 aaKnown RBP6.54□□□□□ -1.36
VPS13C-204ENST00000395898 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.54□□□□□ -1.361e-6■■■□□ 18.9
VPS13C-204ENST00000395898 SLC52A1Q9NWF4 448 aa6.54□□□□□ -1.36
VPS13C-204ENST00000395898 GGNBP2Q9H3C7 697 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 KINO60870 393 aaKnown RBP6.53□□□□□ -1.36
VPS13C-204ENST00000395898 NAP1L1P55209 391 aaKnown RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms